Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->YAB1                                             <---------ICU4                                        <---------YAB1                                      <---------ICU4                                      -------->HAHB4                                               --                                      --------->YAB1                                              ---                                     --------->ICU4             --------->ANAC46                  <--                         --------->AHL20(2)------->TEIL  <------MYB83--------->At4g35610 --------->YAB1          <---------------AGL15      <---------YAB1      <------MYB46(1)           --------->YAB1 ---          --------------->AGL15    --------->YAB1       --------->MYB59     ----------->GT1   -------   gaagaatcacttcaactaatagaaacttaaaatactataatgatgaatcataacaagtttggtttcacatcagcaaaaatgtgaattagaataagaaaaa  15952100                          ------>MYB46(1)                          ------>MYB83              --------->TOE2(3)        --------------->AtSPL8      <---------ANAC46        <---------------AtSPL8     <---------LBD16 ------->CCA1(2)        <---------MYB59 ------>ARR11(3)      --------->ANAC58 -------ARR11(3)      --------->ANAC58           ------>ZmHOX2a(1)                      <---------CCA1(2) ------>ARR11(1)    --------->MYB46(3)    <---------ALFIN1              --------->AHL20(2)    ------- --->DOF2   ------->TEIL------->GAMYB    <-------TEIL    ---------->DOF2<---------AHL20(2) --------->YAB1   gatatgaaattttgtaccttgaacaaccaaattcaattctgggtacacatcctgcatcagaaagactcacaaaattaaaaacttcaacttgtatcatcaa  15952200                                                           <---------ICU4     --------->ARR11(3)                                                       --------->AHL20(2)  --------->HSFB2a(2)                                                       <---------AHL20(2)  <---------HSFB2a(2)                     --------->YAB1              --------->TOE2(3)    <----------DOF2       ------->GAMYB -->YAB1          --------->WOX13(1)             <---------MYB59<---------TOE2(3)        ----------->RAV1(1)   aattcagtaatgtctcacataaatcaaaatgctacttatcttacatatatacctaaattaaacattagggttcttttatagaacttgaattcaacagaaa  15952300                          --------->ICU4                   ---------->DOF2              <---------AHL20(2)              --------->ATHB12                                -------              --------->AHL20(2)             <---------ATHB12                              --------->ATHB12          <---------AHL20(2)                 <---------YAB1                           --------->AHL20(2)          --------->AHL20(2)            -------->P              ---------->ID1        <---------AHL20(2)          --------->AHL20(1)    <-----------GT1 <---------WOX13(1)                    --------->AHL20(1)         --------->AHL20(2)--------->ATHB12  --------->ICU4  <----------DOF2         --------->AHL20(2)   tgtgaaccaaaaaaaattaaaaaaaggaatgatttttcgacttacccatgattggattagactcttttcgtcttgctcaacacaaaaaaaaattgattaa  15952400                                            --------->REM1(2)                                       <---------At4g35610                                        ---          <------MYB46(1)              --------->At4g35610 --------->At4g35610                    <--          ----------->GT1              <---------ZAT2      --------->ZAT2                   ---------          <------MYB83              ---------->DOF2>>>>>>>>>TBF1                          --------->YAB1         --------->MYB59         --------->HSFB2a(2)      --------->GLK1(2)    <---------LBD16    ---  <-----------------AG           <---------HSFB2a(2)  >>>>>>>>>TBF1          --------->ANAC46    ---- -->AHL20(2)                 --------->RVE1(1)  >>>>>>>>>TBF1          --------->YAB1    *TSS--------   aaatgtctaatttggttaaaaactctcaaaaatatcgagaaagctgtgaagaagaagaagaagctggaaacactgataaaccccagaaccaaaaataaaa  15952500                                          <---------CCA1(2)                                      <---------ANAC58                                      <---------ANAC58                                      <---------ANAC46                                     <-------TEIL                                   ------->PIF4                                   <-------MYC3                                   ------->MYC3                                   <-------MYC2                                   ------->MYC4                                   ------->PIF5                                   <-------MYC4                                   <-------PIF4                                   ------->MYC2                                   <-------PIF5                                  --------->ANAC55(2)                                  <---------TGA1a ------>ARR11(3)                  <---------ANAC55(2) -------ARR11(3)                  <---------O2 >AHL20(2)                        --------->O2 ------>GLK1(2)                   --------->TGA1a                                                   - ----->RVE1(1)   ------------>CBF------------>OsbHLH66     ----------------->AGL3                   - ->AHL20(2)      <---------YAB1 <------------OsbHLH66      <-----------------AGL1                 <--   aatctaatttgtttttcttatcaatggctacaaaacacgtgcgtaaatctaagaactaattttcaaatatggtccctatagtttcaaagagtcacatttt  15952600                                                <---------At5g28300                                              <---------ZAT14                                              --------->ZAT14                                              --------->WRKY12                                             --------->DOF5.7(2)                                         ------>NtERF2                                        <---------ALFIN1                                     --------->ANAC46                                     --------->ANAC58                                     --------->ANAC58              --------->TOE2(3)         ------------>CBF          --------->MYB52(1)        <----------DOF2 ----->ZmHOX2a(1)                 --------->TOE1(2)         --------->TOE1(3)                  ------ -------->LBD16             --------->AtMYB61<---------MYB52(1) <-----------GT1             *TSS    - -------LBD16  <-----------GT1   <---------MYB52(2)         --------->TOE2(3)             <---------AHL20(2)   tcctgaaaacaaacaattttccaaattccaccaaaacaaacgacaccgtttactgtcttcaacctttaacctcacttaaacaaaccccctattttttggc  15952700                                           <-----------GT1                                      <----                                        <---------AHL20(2)                                      <----                                   --------->LBD16                 <---------MYB52(1)          <-----                                  --------->ANAC55(2)           ------>ZmHOX2a(2)           ---------      --------->ARR11(3)          <---------ANAC46              <-------TEIL             <---------WOX13(1)      <---------GLK1(2)       --------->ZAT2                   <------ZmHOX2a(2)     <---------WOX13(1)      <---------ARR11(3)      <---------ZAT2                  --------->ARR14(2)  <---------YAB1<---- ---->ID1  <-----------GT1   --------->ANAC58                 <---------ARR14(2)  <---------TOE2(3) -------------------->WRI1   --------->ANAC58                 --------->AGP1 --------->ATHB12  ------   ctctctgagattttcacactcttctcttctcaagctccgtatttttttctcaatagttgatatagatccgttattccatcgattgagattgatagatttg  15952800                                                            --------->ARR11(3)                                                            <---------ARR14(3)                                                            --------->ARR14(3)                                                            <---------ARR11(3)                                                           --------->GLK1(1)                                                  --------->At4g35610                                                  <---------At4g35610                                                --------->YAB1                                             --------->WOX13(1)     ----------->TGA1    <---------YAB1    <------ZmHOX2a(2)--------->ARR14(2) -----ANAC46           ----------->GT1     <---------YAB1  <---------GLK1(1)                        - --MYB83               <---------MYB46(3) <---------ARR11(3)<---------ARR14(2)                ------- ----AtMYB61        <------ZmHOX2a(1)     --------->ARR11(3)--------->AGP1                    ------- >ARR11(1)          ==============================HOX2a_HOX2a ------>ZmHOX2a(2)              -------- --MYB46(1)      =================================HOX2a_HOX2a<------ZmHOX2a(2)               <------- --->MYB111(1)   <------ZmHOX2a(1)<---------ARR14(2)  ---------->DOF2                    ---------->DOF2   gtggagaatgacgacgataggaggattgttaatggggattggaagatcattcagaagaaagagatcttcttctcttgacattctctctcccaaaagagct  15952900                                                      <---------HSFB2a(1)      <----------DOF2                         --------->ANAC46 -------->ANAC46                              --------->ANAC58 -->GLK1(1)                      ------>MYB46(1)      --------->HSFB2a(1) -->At4g35610                    --------->MYB52(1)  --------->DAG2    ------>ZmHOX2a(1) ->ARR11(3)                      ------>MYB83 --------->ANAC58        --------->TOE2(3) --ARR11(3)    ----------->GT1   -------->P --------->ANAC46   <----------DOF2    --------->GLK1(2)   ccaagagacttttacaagggcaaaaactgcaaacctactggtttccacacgagaaaaggttccaactttcatcctaattttgagaatcagttcatttcta  15953000  Previous    Next  AGI:  At5g39790.1    Description:  5'-AMP-activated protein kinase beta-1 subunit-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17140.1); contains domain 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT (PTHR10343); contains domain gb def: AT5g39790/MKM21_80 (PTHR10343:SF2) Range:  from: 15949942    to: 15952489    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g39800.1    Description:  60S ribosomal protein-related. similar to 60S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT5G40080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82662.1); contains domain PTHR21338 (PTHR21338) Range:  from: 15952692    to: 15954360    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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