Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                ----- -----------RAV1(2)                                                       --------->TOE2(3)     ----- -->GAMYB                                                                 <----------DOF2      ------ --->ANAC58                                                         <-----------GT1    <---------LBD16 --->ANAC58                                                   --------->YAB1         <---------WRKY18(1) --->ANAC46                                                  --------->ICU4         ----------->HVH21 ->MYB52(1)                      <-----------RAV1(2)    ----------->RAV1(1)  <-----------GT1  <------   gaacaggggatgctctgtttctgagaaacaatgaaacaggggatgctctgtttttgagcaacaatgagtataactactttaacaacttgaccggagcgtt  15923700                                <---------------AGL15                                <----------DOF2                                --------------->AGL15                        --------->ARR11(3)            <---------AHL20(2)      --------->GLK1(2) <---------ARR11(3)            --------->AHL20(2)      <---------ARR11(1)<---------ARR14(2)    ------>ZmHOX2a(2)      <---------ARR14(2)--------->ARR14(2)   <------ZmHOX2a(2)     --------->GLK1(1)  <---------ARR11(1)  <---------ARR14(2)     <---------CCA1(2)  --------->GLK1(2)   --------->ARR14(3) --------->ANAC58       <-----------ARR10   <---------ARR14(3) --------->ANAC58      <---------CCA1(2)    <---------AGP1                              --------->MYB52(1) ---->WRKY45           <---------ARR14(1)   --------->ARR11(3)                <----------ID1 ---->WRKY38(1)    --------->ANAC58         --------->ARR14(2)                ----------->GT1 ---->WRKY12       --------->ANAC58         <---------ARR11(3)               ----------->GT1 --->DOF5.7(2)     --------->ANAC46        <---------CCA1(2)               ---------->DOF2        <-- -GAMYB            --------->AtLEC2<---------YAB1 <---------YAB1      ---------->DOF2 <---------MYB52(2)   gactcgcaaatctatatggacaagcaaatctttcctttttatagtagatcttcttattaattaagagagagtgaaagaaaaggaaaaaactaactatttc  15923800              --------->RAP2.6(3)             --------->MYB52(1)              --------->GLK1(1)           ------>ZmHOX2a(1)                 --------->CCA1(2)      <---------ARR11(3)          --------->TOE2(3)                 <---------ARR11(3)      <---------GLK1(2)          --------->TOE1(3)             ---------->DOF2  --------->ARR14(2)      --------->WOX13(1)             --------->AtLEC2    <---------ARR11(3)    <---------YAB1              <-----------ARR10        <-----------ARR10    ------------>CBF            <---------ARR11(3)       --------->ARR11(3)   <-----------GT1              --------->GLK1(2)        <---------ARR14(2)    <---------At5g28300  <-----------GT1           --------->ANAC46--------->ARR11(3)      --------->ARR11(3)     ---------- --------DOF2<---------DOF5.7(2)--------->ARR11(3)      <---------CCA1(2)     <-----------GT1   ctttttatcaatccttaacggctaaattacacaaaatctatgcaaagatatcgaaatcaaatcttcacaagatttttgttttaccgattagaagagtgac  15923900                                        ------>MYB46(1)                      <-----------GT1   ------>MYB83             --------->ANAC58      <------ZmHOX2a(1)             --------->ANAC58--------->TOE1(3)                                <---------GLK1(2)     --------->YAB1<---------AHL20(2) <---------MYB59  ---------->DOF2     --------->YAB1           < ->GT1 --------->AHL20(2)   --------->ZAT6  <-----------GT1             <----------DOF2             -   aaaactaaaataaaaacgcatttttttctaaccctaaggaccaaattttctatttcacaaagttgtctcactcactttcatattcttcatcatcttctta  15924000            ------>MYB83                                       --------->HSFB2a(2)            ------>MYB46(1)                                    <---------HSFB2a(2)          <---------MYB59                                --------------->AGL15          --------->TOE2(3)                              <---------------AGL15     ------>ZmHOX2a(1)                                 ------------>CBF    --------->TOE2(3)          ------------>CBF      <----------DOF2 ---------GLK1(1)       <-----------GT1         <---------ANAC58                    --------->ARR11(3) -------->GLK1(1)  <---------TOE1(2)            <---------ANAC58           --------->MYB52(1)   gggtttcctaaacctaattcgtagtttcactctctcaatttcattcgtcttcgtgctttcaattactagaaacaaaaaaacagagagataatcaacaaga  15924100               <-----------GT1             <----------DOF2            ------>ZmHOX2a(2)                        <<<<<<<<<TBF1            =====================HOX2a_HOX2a      <<<<<<<<<TBF1            =================================HOX2a_HOX2a                           --------->ANAC46            <---------ICU4------>ZmHOX2a(1)    <<<<<<<<<TBF1          <----------DOF2          --------->ARR11(3)                <<<<<<<<<TBF1      <-----------GT1     --------->ANAC58          <---------ARR11(3)          ------>ZmHOX2a(1)   <---------YAB1           --------->ANAC58   agatggccattcgatctttaccttcttcctctcgctgttcctcttcttcttcttcttcttcttattcactcgcttcaacgagtctaagcaatagacttga  15924200                                                                                                -----                                                                                               ------                                                                      --------->MYB52(1)      <------                       <----------DOF2                         --------->ANAC55(2)          <--------               <-----------HVH21                               <---------ANAC55(2) --------->ANAC58          ---------->DOF2                                     <---------LBD16      --------->ANAC58        --------->ANAC58  <---------ZAT18           <-----------TGA1<-----------RAV1(2)    <---------ANAC58        --------->ANAC58  --------->ZAT14           <-----------HVH21----------->HVH21     <---------ANAC58   gaccatcttcaagaaagcttcagagctttgcactctctgtgatatcgaagcatgcgtcatctattacggaccagacggagaactcaagacatggcctccg  15924300                                        --------->AHL20(2)                    <---------ICU4                                     --------->WOX13(1)                     <----------DOF2       --------->DAG2            ----------->GT1                       <-----------GT1 ---->LBD16                <---------TOE1(2)                        ----------->GT1 --->HSFB2a(2)             <---------TOE2(2)--------->ANAC46        <---------ZAT6 ---LBD16 --------->ALFIN1<-----------RAV1(2)                    --------->DAG2         --------->LBD16 -SPL7---------->DOF2  <----------DOF2  <---------AHL20(2)      ---------->DOF2         ------>ZmHOX2a(1)   gagcgagagaaagtggaagacatcgctctcaggtatagtcaattaaacgaagccttgagaaggaagaaaagtgttactctttatgacttcctgaacaaga  15924400                                                 <---------ANAC58                                  <---------DOF5.7(2)                                  --------->ARR14(2)                                  --------->MYB52(1)                                   <---------ARR14(2)                                --------->ARR11(3)                                 <---------TOE2(3)                               --------->YAB1    <---------ANAC58                 ---------->DOF2                            ---------->DOF2      <---------ANAC46               <---------AHL20(2)                         --------->ANAC58   --------->YAB1                   --------->ARR11(3)                 <---------HSFB2a(2)        <---------ICU4                   <---------ARR11(3)     -            ------->TEIL --------->ANAC58  <---------ATHB12                  --------->AHL20(1)     <  <------ZmHOX2a(1)    ---------->DOF2     --------->ICU4                    <---------AHL20(1)xxxxxx <----------ID1  --------->HSFB2a(2) ------->GAMYB                    ----------->GT1  <-----------GT1   agaaggacaagacgaacttggagaagaaagcaaagataacggacaatgatgacttgaagacttgtctgaagaacgtgaatattttaaagtatccactcgc  15924500                                                                              <---------MYB52(1)                                                                           <-------TEIL             ------>NtERF2                                               <---------GLK1(2)            <---------ETT(1)                                             --------->ARR14(2)            --------->LBD16                                             <------ZmHOX2a(1) <--------HAHB4                                                     ---------->DOF2 --------->YAB1                                                  <---------HSFB2a(2) <---------ICU4                                                  --------->LBD16 -------->ICU4             <---------At4g35610                   --------->HSFB2a(2) ---------YAB1             --------->At4g35610                  <---------TOE1(1)             <------ xxxxxxxxxxxxxx>smallRNA(se3)           ------>ZmHOX2a(1) ---------->DOF2<---------ARR14(2)   -------   tgatcattactctcccgaccaagtttctcaactgattcagtccttagaacctcatgtctctaaagtccgagaaaggattcgttttgttgagtcgcagaaa  15924600  Previous    Next  AGI:  At5g39750.1    Description:  AGL81/EMB3008 (EMBRYO DEFECTIVE 3008); transcription factor. similar to AGL98, transcription factor [Arabidopsis thaliana] (TAIR:AT5G39810.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 15924103    to: 15925170    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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