Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------ICU4                                                                                      --------->ANAC46                                                                                      --------->ANAC55(2)                                                                                      <---------ANAC55(2)                                                                                    <---------ALFIN1             --------->YAB1                                                       ----------->RAV1(1)          <----------DOF2                                                     --------->ANAC58     <-----------GT1                                       --------->AHL20(2) --------->ANAC58  <----------DOF2 --------->ZAT2 >>>>>>>>>>MYB80        --------->AHL20(2) -------->P --------->ANAC55(1) --------ARR11(3) --------->At4g35610              --------->AHL20(2)      ------>MYB46(1) ------->ARR11(3) <---------At4g35610  --------->DAG2  <---------AHL20(2)  ------>MYB83 --------->ICU4 -------CCA1(2)<---------At4g35610    ---------->DOF2  --------->AHL20(2)--------->AtMYB61         --   atatcttttactctttcatcagcttacaaacttcaaaccaaaaagcattcaaaaaaaataaataaacaaatgagaccaacaaggcaacacataattagcc  15908700                                                                           <---------YAB1                                                                         --------->YAB1                                                                    ------>MYB83                                                                   --------->ANAC46                                                                  --------->MYB46(3)                                                                  <---------MYB111(1)                                                            <---------------AtSPL8                                                            --------------->AtSPL3                                                            --------------->AtSPL8                                                      <---------ICU4------>MYB46(1)                             --------->YAB1    <----------DOF2    <---------MYB55(2)                             <-----------GT1  <---------ANAC46   --------->ANAC58      <-------MYC3                       --------->YAB1         <---------ANAC58   --------->ANAC58      ------->MYC3                      <---------YAB1          <---------ANAC58   --------->DEAR3(2)    <-------MYC2 ------->YAB1      <---------AHL20(2)      <---------MYB52(1)   --------->PCF2         ------->MYC2   atcatacaaattcaggctaaatttatgaaaataacaatccacatcgttgcttttaaaaattagaggtacccaccattgtaattctagcatgtgtatggtt  15908800                                                                      --------->AHL20(2)                                                                     <---------ATHB51                                                     ----------->RAV1(1)                                                     <XXXXXXXXXXXXXXXXXXXXMIR869.1                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                    --------->ANAC46 <---------ATHB12                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               --------->TOE2(3) --------->MYB46(3)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              ------->MYC3                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <-------MYC3                <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------ALFIN1               <XXXXXXXXXXXXXXXXXXXXMIR869.2                       <xxxxxx         --------->AtMYB61                <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   -------         ----------->RAV1(1)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                ---------         <---------ALFIN1               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ANAC58        --------->MYB46(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->YAB1     --------->ANAC58        --------->ANAC46    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxx      --------->ANAC46   --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ZAT6     --------->ZAT18    --------->SPL7<-----------HVH21         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gtctaagcccaccacacatgttttcatacggtataagaagtgtcaactatctcaacaccagaattgaaccaataatatgctcatcagtgttaagcaacaa  15908900          --------->REM1(1)        ------>ZmHOX2a(1)                                                   <---------ANAC58       --------->TOE2(3)                                                    <---------ANAC58  <---------ALFIN1  ---------->DOF2                                 <---------TOE2(3)            <--- xxxxxxxxxxxxxxxsmallRNA(fl3) <---------CCA1(2)                     <---------TOE1(3)         <------ -->MYB46(3)--------->At4g35610                                --------->CCA1(2)       --------->At4g35610 -->RAV1(1) <---------At4g35610<---------ARR11(1)             --------->ARR11(1)    <---------At4g35610 xxxxxxxxxxxxxxxxxxsmallRNA(se3)                            ----------->ARR10<----------DOF2 <------ZmHOX2a(1)   tcccacaatccttcatcagaaacaaagccttcatatctatgagactggtttagaaacaaggatagatatgaaggttttgcttttatagctgatgaggaat  15909000                                                        --------->ANAC55(2)                                                        <---------ANAC55(2)                                                      --------->CCA1(2)                                            XXXXXXXXXXXXXXXXXXXX>MIR869.2                                           ------>ZmHOX2a(1)                                           --------->LBD16                                          <---------LBD16                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------TOE2(3)         <---------ANAC58              <---------ARR14(2)         <---------ANAC58             <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ARR14(2)      <---------RAP2.6(2)            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->GLK1(2)    <xxxxxxxxxxxxxxxxsmallRNA(s)  XXXXXXXXXXXXXXXXXXXX>MIR869.1 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ALFIN1              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->GLK1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ATHB12<------MYB46(1)           <---------GLK1(1)  <---------ANAC46          <xxxxxxxxxxxxxxxxsmallRNA(s)<------MYB83          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC58     ------->TEIL <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <  <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->GT1      --------->SPL7  <------- ------ANAC46     --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------SPL7 <---------AtMYB61 ---ARR14(2)     <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ANAC46<----------   cgtggattgtggcttaactatgatgagcctagtactggtccaatcctggagttgagataggtgatactttcttctaccgtatggaaatctgtatggtggg  15909100                                          <------ZmHOX2a(1)                                       <---------LBD16                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                             <---------RVE1(1) *TSS                           ------------>CBF                                           <---------CCA1(1) -------TEIL                  --------->ZAT18            ----------->GT1                  <---------ARR11(3) --ANAC46                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             --------->ARR11(3) -RAV1(1)              ---------->DOF2 <-----------RAV1(2)   ---------->DOF2          <---------At4g35610   catacatggccagacataagcgagagaaagagagcccaatttcaggagttttctcaagaaggtgaaagctctatagagagagacagagagatgatatttt  15909200                                                                                             ------>MYB46(1)                                                                                             ------>MYB83                                                                                           ----------                                                                                      -------->P                                                                                     ------->GAMYB                                       --------->AHL20(1)             <-----------ARR10    <---------MYB111(1)                      --------->ZAT18  <---------AHL20(1)             --------->GLK1(2)--------->MYB46(3)                      <---------ZAT14  --------->ARR11(3)             --------->ARR11(3)  -----------                    <---------ZAT18   <---------AHL20(2)              <---------ARR11(3)--------->AtMYB61                    --------->ZAT14 <---------AHL20(2)           ----------->GT1    <---------MYB111(1)                    <-------TEIL  <---------AHL20(2)          ----------->GT1       <---------MYB111(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ---------->DOF2          <---------MYB55(2)              ---------->DOF2     --------->AHL20(2)     <---------AHL20(2)         <---------MYB52(2)    <---------bZIP60(2)     <---------ANAC46 <---------ANAC46--------->DAG2         --------->MYB46(3)    <---------ANAC46--------->ZAT18 --------->AHL20(2)  --------->AHL20(2)       --------->MYB46(3)--   ctggtgatgtgttttacaaaggtgcacactgtgtatatatatatattgtgtttagaaatttaaaaggtagaaaatcttatccaacaactaccaccaaata  15909300                                                                          <---------ANAC55(2)                                                                          --------->ANAC55(2)                                                                          <------MYB46(1)                                                                     --------->YAB1                                                                     --------->ATHB12                                                                     -------->ATHB1                                                                     <---------ICU4                                                                     --------->ATHB51                                                                     <--------HAHB4                                                                    <---------ATHB51                                                            -------->P    <------MYB83                                                           ------->GAMYB  ----------->GT1                                                          <---------MYB111(2)                                            --------->ARR11(3)      <---------ATHB12                --------->ARR11(3)          --------->GLK1(2)       --------->ICU4                <---------ARR11(3)          <-----------ARR10--------->MYB46(3)       <---------ANAC58             ----------->GT1       <---------MYB52(2)       <---------ANAC58            --------->MYB59        <---------MYB55(2)       <---------AtLEC2    ----------->GT1  <---------ARR11(3)--------->AtMYB61 ----->AGL15    <---------AHL20(1) --------->DAG2         <---------MYB111(1) ------>AGL3    --------->AHL20(1) <---------TOE2(3)      --------->MYB46(3)           ------->TEIL ------->ANAC55(2)    <---------ANAC46 ----------->GT1 --------->MYB46(3)--------->MYB59   taggtaattgcatgtctatatattgtgtttagaaaataaggtagaaaatcttatccaacaactaccaccaattattaggtaatttcatgtatttgtgttt  15909400                                   --------->AHL20(1)                                   <---------AHL20(1)                                  <---------AHL20(2)                                <---------AHL20(2)                              <---------AHL20(2)                              --------->AHL20(2)                            --------->AHL20(2)                            <---------AHL20(2)                                                  <----                          --------->AHL20(2)                                                  -------                      <---------AHL20(2)                                                  <---------ZAT6                      --------->AHL20(2)                                              --------->ARR14(2)                   <---------AHL20(2)                                                 <---------ARR14(2)                  --------->AHL20(2)                                               --------->ANAC58           ----------->GT1<---------AHL20(2)                                       --------->ANAC58          --------->DAG2<---------AHL20(2)                         --------->YAB1 --------->LBD16         ---------->DOF2--------->AHL20(2)                --------->AHL20(2)      <---------TOE1(2) <-------TEIL    <---------YAB1 --------->AHL20(2)        <---------AHL20(2) <-----------GT1<--------   agattcactaaaaaagtttattatatatatatatatatatattagattactgttttccaattttttgaattatagtttttttcccacgaatactgttagg  15909500                                                                             <---------YAB1                                                                           --------->YAB1     <---------ICU4                                       <------MYB83 --------->AHL20(1)   --------->GLK1(2)                     ------->TEIL     ----------->GT1 <---------YAB1  --------->YAB1               <---------AHL20(2)         <------MYB46(1)--------->AHL20(2)      ---- --ZmHOX2a(1)              --------->AHL20(2)       <---------YAB1    --------->AHL20(2)    --------- -->MYB59      --------->YAB1 --------->AHL20(2)<---------AHL20(2) --------->YAB1           --------- -MYB52(1)     --------->AHL20(2)  <---------AHL20(1)--------->ATHB12 --------->YAB1        ---------   acaataatctttgtaaattataaacacatatatataatatatgtatgtattattttgatttggttaaaagaataatattataaatggacaataaacgcaa  15909600  Previous    Next  AGI:  At5g39693.1    Description:  MIR869a; miRNA Range:  from: 15908807    to: 15909101    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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