Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <-------GAMYB                                                                            --------->LBD16                                                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                                                           xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                           <---------ANAC46                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <---------ZAT14                                                                     --------->ZAT14                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->AHL20(2)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------AHL20(2)                             <---------AHL20(2)  --------->LBD16       --------->AHL20(2)                             --------->AHL20(2)  <---------LBD16     --------->YAB1                                   --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(2)                                   <---------AHL20(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)                                  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->AHL20(2)                                   <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------AHL20(2)                          --------->TOE1(3)   <---------LBD16 ----->AHL20(2)                             --------->TOE2(3)   --------->LBD16                ------ ------AHL20(2)                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ARR11(3) ---->AHL20(2)              <----------DOF2 <----------DOF2    <---------ANAC46     --------->GLK1(2) -->TOE2(3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------LBD16----------->GT1   <-----   aatttaaaaataaataatacattttgcaaacttttatgtatactaactttaaaaaataaattgttccgcggtataccgcgggttaaaatctagttaacat  15900000                                 <---------ARR11(1)                                <---------CCA1(2)                                <---------ARR14(1)                           ------>NtERF2                           <---------ALFIN1                          ----------->HVH21                                   <---------MYB52(1)                          --------->DEAR3(1)                                  ------>ZmHOX2a(1)                          --------->MYB46(3)      --------->ANAC46    <---------TOE2(3)                         --------->LBD16     --------->ARR11(3)      <-----------GT1                     --------->ARR14(2)      <---------ARR11(3)     <-----------GT1 --->ARR11(3)        <---------ARR14(2)     --------->GLK1(1)      <---------AHL20(2) --------->TOE2(3) ----ARR11(3)    <------ZmHOX2a(1)        --------->YAB1    <-------TEIL     --------->TOE2(3)   cttatattttgacaatgaaggagtatccccgaccgtatcatgtatgatatctaagacacacatacatattttaacatttccttagttttcttaacaatgt  15900100                                                             <---------AHL20(2)                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                           <---------YAB1                 --------->TOE1(3)                        --------->TOE2(3)            <----------ID1                 --------->TOE2(3)                        --------->YAB1             --------->DAG2           --------->YAB1                             <---------AHL20(2)             <---------------AtSPL8          <---------ATHB12       <-------TEIL        <---------AHL20(2)        ----------------->AGL1         ------>MYB83  --------->YAB1                <---------AHL20(1)        ----------------->AG         ------>MYB46(1)     <---------AHL20(1)      --------->AHL20(1)     <----------DOF2        --------->WOX13(1)   --------->ARR11(3)      --------->AHL20(2)------>MYB46(1)----------->GT1  <-----------HVH21    ----------->GT1         <-----------GT1         ------>MYB83 ---------->DOF2   aaggggtcaccaatcaaaaccttaattgtaatatatacataggtgtataatacaatttaatattaatatgaccaacttctttccaaaaaagtacaaaaaa  15900200                          <-----------GT1                        --------->HSFC1(2)                        --------->HSFB2a(1)      --------->ARR11(3)               <-------TEIL                  <---------AHL20(2)                         --------->ARR14(2)               --------->ZAT18         <----------DOF2 --------->REM1(1)                <---------ARR14(2)              --------->ALFIN1------>ZmHOX2a(1)  <---------ARR11(3)          <-----------GT1         ---------->DOF2<---------HSFB2a(1) <---------AHL20(2)    --------------------->WRI1------>ZmHOX2a(1)      <-----------HVH21 <---------HSFC1(2)  --------->AHL20(2)  <----------DOF2  <----------DOF2   caattccccatcaaaggtgcagaagaaatttcctcttaattctttatttattatcttacaccaagtctttttgtaagtttctcctttccctatccttctt  15900300                                       ------>NtERF2                                       ----------->RAV1(1)                                      --------->DEAR3(1)                                   --------->ANAC58                                       -----------                                   --------->ANAC58                                     --------->YAB1                                   --------->bZIP60(2)                                  --------->TOE2(3)                                   --------->ANAC46     <------------CBF                --------->TOE1(3)                       ------>ZmHOX2a(1) --------->AtMYB61                  ----------->TBP             ------->GAMYB <----------DOF2   <------------CBF      --------->YAB1 --------->ANAC46   ggtctcttcttccaactgcaacttcctctcttttgcctcgccaccaaaattgtgtccacattgacttattcatcatctatatatacacaaccataaaaac  15900400                    ------>ZmHOX2a(1)              <---------ARR11(3)                 <---------ICU4              --------->ARR11(3)                <---------YAB1       *TSS----------->RAV1(1)                --------->YAB1     <---------ARR14(2)                      <-------TEIL     <---------ARR11(3)                  <---------YAB1     --------->ARR11(3)              <---------ANAC58              <----------DOF2    <---------CCA1(2)                <---------ANAC58              <---------DAG2              <----- >TBP--------->ARR14(2)         <----------DOF2 --------->ICU4  <-----------GT1         ---------->DOF2   aaactcatatctccaacatctcctccaaaacattcttttccttgtgattcattattttgcctagttttacttttcaaatagacttctaacaaaagttatg  15900500                       <-----------GT1                                              <------MYB83          --------->YAB1                                                            <------MYB46(1)          --------->AHL20(2)                                                 <---------MYB52(1)          <---------AHL20(2)                                                 <----------DOF2       --------->WOX13(1)                                              <----------DOF2    >>>>>>>>>MYB2 <----------DOF2                                    ---------->ID1<---------AtMYB61 ----YAB1<---------ATHB12           <-------TEIL                 <----------DOF2   --------->MYB59   actgaaaaccaattatatagctttataaccatgaagagttcattgtctaaatgcaaacagtcttcttctttgtctttccctttgtttggtctgatcaact  15900600                                                                                         --------->LBD16                                                                                         <---------HSFB2a(2)                                                                                     <---------ARR14(2)                  <---------At4g35610                <---------ARR14(2)    --------->ANAC58                  --------->At4g35610    <---------YAB1                    --------->ANAC58          <---------MYB52(1)          <---------MYB52(1)                   --------->ANAC46   ------>ZmHOX2a(1)        <----------DOF2          --------->ARR14(2)--------->ANAC46  --------->HSFB2a(2)   tcttcctcatcggttttttcagatgggtttcttttgctcagttatttttctctaggttctggcctcttgttcaacaccagcaatgtgtttccgagaagaa  15900700                                                         <---------YAB1                                                         --------->ICU4                                                       --------->YAB1       ------>ZmHOX2a(2)                              --------->ICU4      <------ZmHOX2a(2)                               <---------YAB1     --------->AGP1                                 --------->YAB1     --------->ARR14(2)                            <---------YAB1                           <--------     <---------AGP1                                --------->ICU4                       <-------GAMYB     --------->ARR11(3)                         --------->ICU4                         <------MYB46(1)     <---------ARR14(2)                         <---------YAB1                         <------MYB83     <---------ARR11(3)                    <---------ANAC58                            ----------->GT1     --------->ARR14(3)                  <---------ARR11(3)                            <---------MYB46(3)     <---------ARR14(3)                  --------->ARR11(3)                   <---------REM1(1)   ----------->ARR10             --------->ANAC46--------->YAB1              --------->ARR11(3)------ ---------->DOF2          <------ZmHOX2a(2)<---------ANAC58      <----------DOF2      <---------AtMYB61   gagcaaagatcttgagttccaaacttcgatcaaacacgaagaatatcgtgatgatgatgatgatggtctttgcagagaagatgtagggatggttatgaaa  15900800                    --------->ANAC58                    --------->ANAC58              ----------->HVH21                                    <---------ARR11(1)       <----------DOF2                                             --------->GLK1(2)       --------->GLK1(1)                                           ------->TEIL            --------->ZAT2      <---------ANAC58                        --------->ZAT14      --------->ARR14(2)      <---------ZAT2 -YAB1<---------ANAC58     --------->TOE1(2)  <---------ZAT14      <---------ARR14(2)<----------ID1 ---->DOF2  <---------At4g35610               <---------ZAT18<---------ARR14(2)  ---------->DOF2   <-   agcttagggctttccactgaccaagaaaacgagggacttcaaaaacagtacagttccaaggaggtttcgaatctgttcgaagagaaagagccaagcttag  15900900  Previous    Next  AGI:  At5g39670.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT3G29000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15001.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 15900407    to: 15901295    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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