Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->LBD16                         <---------ANAC58                  <------------AtMYB77                  --------->MYB46(3)                 ------>MYB83                 ------>MYB46(1)               --------->AtMYB61               --------->MYB46(3)              --------->DEAR3(2)              <---------MYB55(2)              --------->MYB46(3)      <---------GLK1(1)  <---------ANAC46                                                          --      --------->GLK1(1)  <---------ANAC58                                                         <--   <---------TOE2(2)--------->At4g35610                             --------->MYB52(1)        ------- ---------ANAC58 -------->P   <---------------AtSPL8         <---------ANAC46                <------- -------->ANAC55(2)--------->ANAC46                         <---------At4g35610              -------- ---------ANAC55(2)------->GAMYB<---------SPL7              --------->At4g35610             <-------- ---------ANAC58--------->MYB55(1)                         --------->MYB52(1)            ------------ ---------ANAC46--------->MYB52(1)                     <---------TOE2(3)                --------->MYB52(1)   ttacgtagatttccgaaccaaccgctaccgtggatgtacgaagtactggtgaagacgaaggtagcggaatcaacgaatagtcatgtatagtaccggtacc  15860000                                           --------->At4g35610                                -------                                           <---------At4g35610   --------->ANAC46             ======= ------->ALFIN1                   <---------ALFIN1               --------->AtLEC2           --------- ---------HVH21               <---------ZAT14          <---------ZAT2                       <-------- -->MYB52(1)                  --------->ZAT18          <---------At4g35610                <---------MYB46(3) --ARR14(2)                   <---------ZAT18         --------->MYB52(2)                  --------->MYB55(2) ->ARR14(2)                   --------->ZAT14       <---------MYB52(1)                    --------->ABI4(2) -MYB52(1)                   --------->ALFIN1     <---------MYB46(3)                     --------->ALFIN1 ----->AGL1         --------->AtLEC2   --------->ALFIN1--------->At4g35610            <---------DEAR3(1)   ggtgagggtttcatcaggtttcatccaaagagtgtaccactgtggagatgaatggttagctgattccaagcagaaatagaggcatggctcggtggttccg  15860100                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             <-------        <---------ANAC46                                                                     <-------      ------>ZmHOX2a(2) <---------LBD16                                                      <-------     <------ZmHOX2a(2)  --------->LBD16                                                     <-------TEIL    --------->ARR14(2) <---------LBD16                                                     --------->CCA1(2)    <---------ARR14(2) <---------ANAC58          ===================bZIP_DOF     --------------->AGL15   <---------At4g35610 <---------ANAC58          <----------DOF2         --------->YAB1   --------->ARR11(1) ---------->AGL3       <---------ANAC46    ----------->GT1<---------O2  <---------YAB1    --------->ARR14(2) ================================================================================================MADS_MADS >ARR14(2)            <---------LBD16   ============================bZIP_DOF    ----------------->AGL3 -ARR14(2) <---------ANAC46             ---------->DOF2   <---------TGA1a<------ZmHOX2a(1)<---------ARR14(2)   atttcagatcgcgtcttgtatagttgcggggaagagagaagagaaaggaaacttttggagacgagagagagattaggataactccatttagagatacgtg  15860200    --------->KAN4(2)                         <---------ANAC46   <---------HSFB2a(1)                      <---------MYB46(3)   --------->HSFB2a(1)                      ------>NtERF2   --------->KAN4(1)                       <---------DEAR3(1)   <---------KAN4(1)                       --------->ALFIN1   --------->HSFC1(2)                    <---------DEAR3(2)                                         <   <---------HSFC1(2)                    <---------MYB46(3)                                         -  <---------KAN4(2)                     <---------DEAR3(1)                   <---------MYB46(3)   <-- ->ANAC55(2)                   --------->bZIP60(1)                         <---------ANAC58  <------ZmHOX2a(2) --ANAC58                      <---------bZIP60(1)                         <-------GAMYB    <-------- --ANAC46         <---------ANAC58    ------->GAMYB                        <---------ANAC58--------->GLK1(1) --ANAC55(2)      <---------ANAC46   ----------->HVH21                    <---------MYB46(3)--------- --ANAC58         <---------ANAC58   --------->MYB46(3)                  <---------AtMYB61 <---------GLK1(1) --ANAC55(1)<---------YAB1  ----------->HVH21<------NtERF2            <----------DOF2 <---------LBD16   caagaatgttctctatgatttcgtatgggagtgacatcaacgacggtggctcagaactcaaacttctcttctcttttggttgttcaacttcggagatcat  15860300      <---------ARR14(2)      --------->ARR14(2)     <------NtERF2    --------->LBD16   --------------->AGL15   --------->LBD16  <-----------------AG  <-----------------AGL1  ----------------->AGL1  <---------LBD16                                                                                  <-  <------NtERF2                                                                                    <- <---------ATERF1(1)                                                             <---------ZAT18   -- ---------DEAR3(1)                                                               --------->ETT(2)*TSS -------->ETT(2)                                                      >>>>>>>>>RAP2.2           <---- ---------HVH21           --------->ZAT14        ----------->GT1   <---------CCA1(2)      <---------AHL20(2) -ARR11(3)                <---------ZAT14       <---------TOE1(3)--------->ANAC55(2)   <---------ICU4 >ARR11(3)             <---------ANAC46         <---------TOE2(3)<---------ANAC55(2)  --------->ICU4   ggtcgccggaaatggtagaagcatgcagtgaagaagatagatgagaaattagggttatatatagattacatatctaaatattgtggacataattagttgt  15860400                                                                                     <---------AHL20(2)                                                                                   <---------RVE1(1)                                                                                  <---------ARR11(3)                                  --------->WOX13(1)                              --------->ARR11(3)                           <---------REM1(1)     --------->ARR11(3)               <---------GLK1(2) --------ANAC46    --------->AHL20(2)            <---------ARR11(3)       <---------ANAC58 --------bZIP60(1) --------->AHL20(1) <------------CBF                    <---------ANAC58       ---- --------->GT1     <---------AHL20(2)--------->YAB1                       <---------ANAC46    ------- -----AtMYB61     --------->AHL20(2) --------->ATHB12                --------->YAB1<---------CCA1(1)   ggtgtcaaaaaaaaaaaaaaaaaaattagttgtagtcattcattgtccaaagatttgtttatagacataaatcatagcttataagatttttttttctaaa  15860500                                        <------ZmHOX2a(2)                                        --------->CCA1(2)                                       --------->ARR11(3)                                       --------->ARR14(2)                            <---------AHL20(2)                            --------->AHL20(2)                           <---------AHL20(2)      --------->ICU4       --------->YAB1    --------->MYB52(1)     --------->AHL20(2)                                   <---------ARR11(3)    <---------ICU4      <---------ICU4 <---------ARR11(3)                       --------->ARR11(3)    --------->YAB1     <---------AHL20(2)  <---------REM1(2)                 --------->AHL20(2)   <---------AHL20(2)  <---------ATHB51<---------ARR14(2)          ---------->DOF2                  -   <---------ATHB51    --------->ICU4  --------->AGP1    --------->AHL20(2)  <---------AHL20(2)<----- ------->GT1       <---------YAB1  ---------->DOF2     --------->YAB1 ----------->GT1          ------ --->DOF2<---------YAB1--------->AHL20(2)------>ZmHOX2a(2)--------->YAB1    --------->AHL20(2) ------   ggtaaataatggttatagtttataaataattaaaatataaagatctacaaggcttaaaaataaaaattcaaaaggaaattaaaatctacaaaataaacct  15860600                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                <---------AHL20(1)                                                                                --------->AHL20(2)                                                                           --------->AHL20(2)                                                                        <---------YAB1                                                                  <---------YAB1<---------ARR11(3)         --------->TOE1(3)      <-------TEIL                     <-----------GT1--------->AHL20(1)  <         --------->TOE2(3)     --------->CCA1(2)               <---------AHL20(2)  <---------AHL20(2) ---------->GT1               --------->ARR14(2)              --------->AHL20(2)<---------AHL20(2)  < ----MYB59                    <---------ARR14(2)          --------->AHL20(2)    --------->ARR11(3)--- --->TOE2(3)         --------->AHL20(2)                --------->YAB1------>ZmHOX2a(1)     <--------- --->TOE1(3)---------->DOF2   <---------ARR11(3)  --------->AHL20(2)--------->TOE2(3)<---------AHL20(2)   aaatgtaaaaaccataaaacaaaaaaaatcaagatacactaattcaattgcattaattcataaattttatccttatttttaatatattaatttctttttg  15860700                         <---------AHL20(2)                        --------->YAB1                        --------->AHL20(2)                        <---------AHL20(2)                     <---------ICU4                    --------->ICU4   --------->MYB52(1)                --------->TOE2(3)           ----------->GT1<---------YAB1                   --------->CCA1(2)                        < ----------->GT1    <---------ATHB51 ---------->DOF2      <---------ARR11(3)                        - ---------TOE2(3)   <---------AHL20(2)      --------->TOE2(3)    --------->ANAC46                  -- ---------TOE1(3)   --------->AHL20(2)   <------ZmHOX2a(1)--------->ARR11(3)---------->DOF2  -------- ------->DOF2   <---------YAB1 ----------->GT1    --------->AHL20(2)   --------->TOE1(3)  ---------->DOF2 -DOF2     --------->YAB1--------->AHL20(2) --------->TOE1(3)  --------->ANAC46      <---------CCA1(2)   taaaggtaaacaatggttataaataattaaaattggaaataaaggaccttaaaaatataagatatacacaaaaccttaaaaagcctcatatcaaaaggaa  15860800                                --------->TOE1(3)                                --------->TOE2(3)   --------->ARR11(3)    --------->AHL20(2)   <---------ARR11(3)    <---------AHL20(2)                                <---------ARR11(3) ---------AHL20(2)      --------->AHL20(2)                            ----------------->AG -------->AHL20(2)--------->TOE1(3)                                   ----------------->AGL1  ------- ------->AHL20(2) <---------MYB59         --------->AHL20(2)  <----------DOF2--------->YAB1   ------- --->GT1          --------->TOE2(3)---------->DOF2    <-------TEIL<----------DOF2             -------   attaaaatctacaaaataaacctaaatttaaaaaccataaaccaaaaaatatgaggcacattttctttcttttccaaaatcataaaccaaaaattcaaga  15860900  Previous    Next  AGI:  At5g39560.1    Description:  similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19870.2); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19870.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 15858920    to: 15860397    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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