Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        ----------->HVH21                                                                    <---------MYB46(3)          -----                                                                    <------MYB83       --------->ANAC58                                                                <---------MYB46(3)     --------->ANAC58                       <------NtERF2                        ------->TEIL               --------->ANAC46           ---------->ID1                                   <-------TEIL             <---------TGA2(2) <---------ATHB12    --------->ETT(1)                       --------->SPL7           ------>NtERF2 ------->WOX13(1)   --------->RAP2.6(3)  <----------DOF2  <---------SPL7            --------->WRKY12X ------ATHB12 ------>ZmHOX2a(1)<---------ANAC58         --------------->AtSPL3      ----------->HVH21 >YAB1 <---------MYB52(1)      <---------ANAC58       ------->TEIL  <------MYB46(1) ----------->TGA1-   tcaatcactgtttgtccttcttgtcggcatgaggcgagttgagctttaatctggtgaacccgtacgttgttggtgacagagaaacgctgacgcaattcgt  15850300                                                                              <------ZmHOX2a(2)                                                                             --------->ARR11(3)                                                                             <---------ARR11(3)                                                                        --------->TOE1(2)                                                                        ------->GAMYB                                                                        --------->TOE2(2)                                                                       --------->DEAR3(2)                                                                       <---------MYB55(2)                                                                       --------->MYB46(3)              <---------At4g35610                                     ------>MYB83     --------->WRKY12       --------->ARR11(3)       --------->LBD16                       -------->P       --------->ZAT18       <---------ARR11(3)--------->ANAC46       <---------At4g35610   ------>MYB46(1)  --------->WRKY38(1) ----->ID1 <-------TEIL---------->DOF2     <----------DOF2       <---------ARR14(2)  <---------At4g35610 XXXXXXXXXXXXXXXXXXX>MIR399E <---------At5g28300--------->At4g35610   --------->ANAC46 <---------ZAT14 --------->DOF2      --------->CCA1(2)  <-----------GT1          --------->ARR14(2)  --------->At4g35610   cccaaagaagatgtgcatcagagataaaagtcaccgtggatttaactttcggctcaattgaaactcgaatccaacccacgatcatggagttgactgtttt  15850400                             <------NtERF2                            ------>NtERF2                            <---------RAP2.6(3)                            --------->LBD16                           <---------ATERF1(2)                           --------->ATERF1(2)                           <---------RAP2.6(2)                          <---------LBD16                      <---------ANAC58                     <---------MYB52(1)                      <---------ANAC58               ------->TEIL                  <-----------HVH21               <---------ATHB12     <---------ANAC58              <------ZmHOX2a(1)<----------DOF2  --------->WOX13(1)     <---------ANAC58           <---------ICU4 --------->RAP2.6(3) <---------ATHB12   <----------DOF2        <---------ARR11(3)   ccaattctcaaaatcaggactgtcacttgccggcttttgaattgtcccatcaatgaatcccgtttttcttttagcttgaagagcattcaacatctcttca  15850500                <-----------GT1              --------->ARR11(3)             <---------ICU4          --------->YAB1                                                                 --------->MYB52(1)          <---------ICU4                                                             --------->ZAT18         --------->ICU4                                                              <---------ZAT18         <---------YAB1                                                              --------->ZAT14        --------->AHL20(2)                                                           <---------ZAT14        <---------AHL20(2)      ------->GAMYB                                    ------>NtERF2        <---------AHL20(1)   ----------->RAV1(1)                                 <---------ATERF1(1)       --------->YAB1        --------->MYB52(1)             <------NtERF2--------->CCA1(2)      <---------YAB1        --------->ANAC46      --------->LBD16     --------->ANAC58   ----------->RAV1(1)    --------->YAB1        --------->ANAC46       <---------LBD16      --------->ANAC58  --------->ANAC46   <---------ATHB12  --------->AtLEC2   <---------YAB1    --------->ETT(1)   --------->DAG2   gaccattcattataattatctccattcaacacaacagaggtgatcaatgtccctggattgtcggagtttgacaaggtataaggcgactgcacaacagatg  15850600                                           <---------GLK1(2)                                           --------->ARR14(2)                                         --------->LBD16                                       <---------LBD16                                      --------->MYB52(1)                                      ------>MYB83                                      -------->P                                      ------>MYB46(1)                                     --------->MYB55(1)                                     <---------ALFIN1                                    --------->MYB46(3)                                    <---------ABI4(2)                   ------->GAMYB    <---------MYB55(2)                                   <---------ANAC58            --------->At4g35610    --------->DEAR3(2)                                    <---------ANAC58            --------->ZAT18       ------->TEIL                                     <---------ARR11(3)            <---------ZAT14    ------>ZmHOX2a(1)                                   --------->ARR11(3)            <------NtERF2<---------ATERF1(1)                                       <---------GLK1(2)         --------->ATERF1(1) ----------->RAV1(2)                     ----------->GT1   <-----------GT1         --------->At4g35610------>ZmHOX2a(1)           <---------MYB52(1)       <---------TOE1(3)        <---------ATERF1(1)<---------ALFIN1<---------ARR14(2)      *TSS          <---------TOE2(3)   atgcagagggaggctgcacaacgagcgctcctcctgaacccaccggattctcatcaccgatagccataaaactgaaaaattttaagatttttcttgctct  15850700                                                                                           --------->ARR14(2)                       <---------MYB59     ------->TEIL                                    <---------ARR14(2)                 <------------CBF      <---------TOE2(3)                            --------->CCA1(2)               --------->ARR11(3)   <---------YAB1                        ------>ZmHOX2a(2)<---------ARR11(3)             --------->DAG2      --------->AHL20(2)        <---------AHL20(2)      <---------ARR11(3)           ---------->DOF2       <---------AHL20(2)      <-----------TBP--------->ARR14(2) --------->ARR11(3)         <------ZmHOX2a(1)      <---------WOX13(1)--------->TOE2(3)     <---------ARR14(2)<---------CCA1(2)   gataccatgtaggaaaaggtattgaactaacttgatttattaatgaactcaaccttggtatttatacatgaggggatcgacacaagataaacatatctcg  15850800                                                                          --------->TOE2(3)                                                                    --------->TOE2(3)               <                                            <---------AHL20(2)      --------->YAB1                 <-                                         <---------ARR11(3)        <<<<<<<<<ARR1                 ----                   <---------YAB1        --------->ARR11(3)        <<<<<<<<<ARR2--------->YAB1   <---           --------->YAB1          <---------ANAC55(2)         <-------TEIL------>ZmHOX2a(1)    <----          <---------YAB1<---------AHL20(2)--------->CCA1(2)   --------->CCA1(2) <---------ICU4-------   acttctaaacatatcataactatgatttaaacttatcacataagatttaaacttatcgcataagatacaatcttatcctcaatattgactcttgcatcat  15850900                                                                                          <---------At4g35610                                                                                         <---------MYB46(3)                                                                                        <--------P --------->TOE1(2)                                                                     <-------GAMYB ---------ICU4                 --------->ANAC58                                       <---------MYB46(3) --------YAB1             <---------YAB1 ---------->DOF2             ---------->DOF2<---------LBD16 ----->YAB1             <---------At4g35610          <------ZmHOX2a(2)          ---------->TaMYB80 ------ICU4      --------->MYB52(2)  --------->TOE2(3)  --------->At4g35610<---------At4g35610 -----YAB1     <---------ANAC46--------->ANAC58     --------->ARR11(3)     --------->At4g35610 -->YAB1  <-----------RAV1(1)--------->CCA1(2)      <---------ARR11(3)     <---------LBD16--------->At4g35610   catcatgcgactatgttgtttgtttctgatgatacacaatctcaaaagactccagatcatatgactctggctaaagcagcggattatgcggttgctgact  15851000                           --------->ARR14(2)                                               <--------                           --------->GLK1(2)                                        <---------MYB55(1)                  <--------P                                                        <--------P                 <-------GAMYB                                                     <-------GAMYB                ----------->GT1                                                   <---------MYB46(3)                <---------MYB46(3)                      <-------GAMYB            <---------ANAC46               <---------RAP2.6(2)                     <---------MYB46(3)       ------>NtERF2--------            <---------ARR14(2)     ------>NtERF2  <---------At4g35610  --------->YAB1     --------->ANAC58            --------->ARR14(2)  --------->At4g35610  <---------At4g35610     <---------At4g35610 ----           <------ZmHOX2a(1)    <---------At4g35610  --------->At4g35610 ----------->TGA1 --------->ANAC58     --------->YAB1        <---------ARR14(2)     --------->At4g35610  <---------ICU4 <------MYB83  <---------CCA1(2)<---------MYB46(3)            <-----------RAV1(1)  <---------ATHB12<------MYB46(1)   ctccatatcatgaggatgcggttgataagaatccagcgggcctggacaaaactgctgctgttgatattccaaatcatgacgctgcggttggcaagaatct  15851100                --------->YAB1                                      ------->GAMYB            <---------MYB46(3)                                    --------->At4g35610           <--------P                                        ------->MYC2    <---------ANAC58                                         <-------MYC3    <---------ANAC58                                         <-------MYC2   --------->ABI4(2)                                         ------->MYC4                  <---------At4g35610  --------->ALFIN1    --------->ANAC46  <---------At4g35610  ------->MYC3                <----------- -GLK1(2)<---------MYB46(3)          --------->At4g35610   <-------MYC3        <---------GLK1(2)    < ->GLK1(2)<-------GAMYB              <---------At4g35610   ------->MYC3   --------->MYB52(1)  <------ ----->MYB52(1)<---------YAB1      <--------P     <---------ATHB12<---------At4g35610 <----------DOF2   agcggtgctagcggttgatgatactcgacattgcaaggttgctgctcttccaatgcttccacatgtgcaactgaaacaacggcttctcctttcttctgct  15851200  Previous    Next  AGI:  At5g39533.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.1e-41 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 15849218    to: 15850667    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g39540.1    Description:  similar to ANAC063 (Arabidopsis NAC domain containing protein 63), transcription factor [Arabidopsis thaliana] (TAIR:AT3G55210.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187) Range:  from: 15850971    to: 15851648    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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