Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------ANAC58                 <---------ANAC58             <---------ANAC58             <---------ANAC58           --------->GLK1(2)          --------->ARR11(3)          <---------GLK1(2)                                      ---------->DOF2          <---------ARR11(3)                                  ----------->GT1        --------->ICU4                                <-------TEIL--------->DAG2      ---------->DOF2                                --------->CCA1(2)   --------->ANAC58                                 --------->ARR11(3)                       <-------   --------->ANAC46                                 --------->ARR14(2)     ---------->DOF2 <---------At4g35610   --------->ANAC58         --------->GLK1(2)       <---------ARR14(2)----------->GT1   <------ZmHOX2a(1)   tctccaagtaaagattcttgcttcgtcaagactctgtgaacaaatttagaagaagatacagagagagtaaagttgtataaagagagattaggaagatgat  15844900                                         ----------------------->TaNAC69(2)                                        <-----------GT1                                        --------->ZAT6                                     <---------CCA1(2)                                   <---------ANAC58                               ------->MYC2                               <-------MYC2                               ------->MYC3                               <-------PIF5                               <-------MYC3                               ------->MYC4                               ------->PIF5                               <-------MYC4                              <---------TGA1a                              --------->ANAC46                   <----------DOF2 <---------ANAC58              --------->CCA1(2)                   =====================bZIP_DOF                --------->ARR11(1)           =============================bZIP_DOF                --------->ARR11(3)           <----------DOF2    <---------O2                      --------->ARR14(2)          ==============================bZIP_DOF       ------>NtERF2          <---------DAG2      --------->O2            --------->ANAC46   <---------GLK1(1)          <---------PIF3(3)       --------->ANAC58                         <-----   --------->CCA1(2)          --------->TGA1a         --------->bZIP60(2)       --------->ARR11(3)  -   --------->GLK1(1)          --------->PIF3(3)       --------->ANAC58 --------->GLK1(2)   <---------  --------->ARR11(3)          >>>>>>>>>>HY5   <---------ANAC58  <---------ARR14(2)        <---------ANAC58  <---------ARR11(3)        <---------ALFIN1  <---------ANAC58  <---------ARR11(3)    <----------DOF2 --YAB1   <----------DOF2 <----------------PIF3(2)  <---------ALFIN1  <---------GLK1(2)   <---------ANAC58   aagagatatcagccttttgggcttctacgtccacgtggcatatcactagcttatccacgccatcaagatttggaatctgtagggtcttctttgctttagc  15845000                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                               --------->ARR14(2)                                               --------->ARR11(3)               <---------LBD16 --------->ANAC55(2)              <---------ANAC58 --------->ANAC58<---------ARR11(3)  <---------ALFIN1             --------->ANAC55(1)   ----------->HVH21                     --------->YAB1 ----At4g35610<---------ANAC58 --------->ANAC58--------->AGP1                       --------->ZAT18 ----->ZmHOX2a(1)              --------->ANAC46<---------ARR14(2)           --------->REM1(1) -DOF2        <---------ANAC46 <---------ANAC55(2) --------->At4g35610    <-----------GT1 <---------YAB1   tccttcaccttcgcattcgtggatgagaatgacacgaaataaacttgaagatccactgacaaaaactttgtatgtgttacaacatggggactatcataac  15845100                --------->TOE2(3)             <---------GLK1(2)      ------>MYB46(1)                                                ------->TEIL        --------->ARR11(3)      ------>MYB83                                  <---------AHL20(2)     <---------ZAT6<---------ARR11(3)    <---------MYB59<---------AHL20(2)     <-----------HVH21   <---------ZAT6     ---------->DOF2    --------->AtMYB61          <-----------------------TaNAC69(2)   <---------CCA1(2)<------ZmHOX2a(1)   aaatgaccaaacccaaattcttaaatttttagtgaggcaagaagggtcacttcttaaatttttagtgtttgtatctagtcttaaaaaggactatcttgtt  15845200                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                  <---------YAB1                                                          <---------At4g35610                                                 <---------AHL20(2)   --------->AHL20(1)                                               <---------YAB1  <---------YAB1                                            <---------ARR11(3) *TSS--------->YAB1                                     --------->YAB1<---------AHL20(2) <---------AHL20(1)     --------                                    --------->ICU4<---------YAB1--------->YAB1             --------->TOE1(3)        <---------ANAC58            <---------ATHB12     <---------TOE1(3)                 --------->TOE2(3)        <---------ANAC58   --------->ZAT6 ----------->GT1<---------TOE2(3)      ------------>CBF   ttctatacatgcttgcaatttcaattcaaactctaccaatgatcaagttatttttatttaagcttatgataataaattcacttgcaattcaaaccataaa  15845300                                         <---------ANAC58                         ---------->ID1                <------------CBF         <---------ANAC58                        <-----------GT1          <---------HSFB2a(2)        <----------DOF2                          <---------AHL20(2)      <----------DOF2                <---------DAG2                <---------AHL20(2)      <---------DAG2              <-----------GT1                  --------->AHL20(2)  --------->ANAC58             --------->YAB1                     --------->AHL20(2)  <----------DOF2  --------->ANAC58             <---------ICU4             ----------->GT1    --------->AHL20(2)  --------->ANAC46         <---------AHL20(2)         <-----------GT1        <---------AHL20(2)<----- --->TBP  --------->HSFB2a(2) <---------YAB1        <---------AHL20(2)       <---------AHL20(1)------   aaccacgactttatagaaaattgtcttatttcattataacttttcgtttgatattttttctcgttaaaaaaaatttcaatttttttctctttaagaaggt  15845400                                                                <---------AHL20(2)                                                          --------->YAB1                                                       <---------ICU4       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 --------->ANAC55(2)       --------->ANAC46                                                 --------->ANAC46        --------->ANAC46                                --------->ARR11(3)     --------->YAB1   <---------ZAT14                          <---------HSFB2a(2)    --------->YAB1--------->AHL20(2)      <------------------------ANAC81      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) XXXXXXXXXXXXXXXXXXXX>MIR1886.3 ----ARR11(3)             --------->HSFB2a(2)   <-------TEIL   <---------AHL20(2)                <xxx --->ARR11(3)---------->ID1     <---------ARR11(3)    --------->ICU4    --------->ZAT14   <---------CCA1(2)   ctgagttttttttttgttttttttttttttagaaggtctgagttctaatatacataatcatcaaaataaatgactacacaactcaagacttcatatcact  15845500                         --------->ANAC46                         <---------ALFIN1                                                    --------                        ------>MYB46(1)                                           --------->ANAC58                --------->TOE1(3)              <---------At4g35610           --------->HSFB2a(2) ----                --------->TOE2(3)              --------->At4g35610       --------->YAB1      <-------             ----------->RAV1(1) <-----------GT1   <---------AtLEC2      --------->TOE2(3)  <--------   --------->GLK1(1)    ------>MYB83     <-----------ARR10         --------->ANAC58      <---------AHL20(2)   <---------GLK1(1)   <---------ALFIN1  --------->ARR11(3)        --------->ANAC46     --------->AHL20(2) <------ZmHOX2a(1)    ------->GAMYB      <---------ARR11(3)        --------->ANAC58    <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------CCA1(2)     --------->HSFB2a(2) --------->ANAC58   cgaggatttcaggcacaacattaacccactccgtcttaccacatatctcatctgtatggcgcttctctaacgcaatcttagagaacccaattttatatcc  15845600                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                  ================HOX2a_HOX2a                                                 <---------ARR14(2)                                                 --------->ARR11(3)                                                 --------->ARR14(2)                                                 --------->GLK1(2)                                                 <-----------ARR10                                                 <---------AGP1                                                <---------CCA1(2)                                                <---------ARR14(1)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                <------NtERF2                                              <---------ANAC58                                              <---------ANAC58                                           --------->ALFIN1                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      --------->ANAC46                                      --------->ANAC58   <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      --------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    ---------->DOF2===============HOX2a_HOX2a                                 xxxxxxxxxxxxxxxx>smallRNA(i)              ----------->RAV1(1)                            --------->ANAC46  <---------ANAC46           --------->ZAT18                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ZAT18                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-----------RAV1(1)          <--                          xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ----             xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------AHL20(2) ->ARR14(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------LBD16        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -->ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------ZmHOX2a(1)<------NtERF2  --------->AHL20(2) --ARR14(2)--------->YAB1 ----------->RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ZAT6-- -CCA1(2) <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------------AGL15    --------->AHL20(2) xxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<----   tctatcgtcttcatcataccactgcttcccacataactacaagcagtggcggatctagggaggaaaactatatggggcaccatattagtgaaaaaaattt  15845700        <---------ICU4        <---------AHL20(2)       --------->AHL20(2)     --------->YAB1                                                                         <xxxxxxxx    <---------YAB1                                                                     xxxxxxxxxxxxxx    --------->ICU4                                                                --------->ALFIN1  --------->YAB1        --------->AHL20(2)                                       <xxxxxxxxxxxxxxxxsmallRNA(s) -------TOE2(3) ----------->GT1                           xxxxxxxxxxxxxxxx>smallRNA(s)<---------ZAT18 ------>DOF2    <----------ID1                <---------ZAT6        xxxxxxxxxxxxxxxx>smallRNA(s) --------->GT1----------->GT1            --------->MYB52(1)      <---------At4g35610  --------->ZAT18 -----AHL20(2)<---------LBD16       --------->AHL20(2)  <------NtERF2         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   aaagtaataataaatatggggaaaaaataaacatgaaatcaaataccagtgtaagggcatcgaacacagcttatgggacatagagtagggcacttcttcc  15845800  Previous    Next  AGI:  At5g39530.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15021.1); contains domain PD029330 (PD029330) Range:  from: 15843317    to: 15845263    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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