Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ------>ZmHOX2a(1)                    <---------DAG2                    <----------DOF2              --------------->AtSPL8               <---------ANAC58             <---------ANAC58                      <---------ANAC46             <---------ANAC58                      <---------ANAC58<---------AHL20(2)          <-----             <---------ANAC46         --------->ALFIN1             --------->AHL20(2)     <---------AHL20(2)         <----------DOF2 --------->TOE2(3)<---------ZAT18<---------AtLEC2    --------->YAB1    <-----   gcccatagactcttttcttgtacttttcctcaattttctagtggtgcaatttttcgtgtgcatgctcatataatttgtatcatgggttccatttttttct  15798700      --------->YAB1    -------->P     --------->ARR11(3)  --------->MYB46(3)   <---------YAB1                        --------->AHL20(2) <---------TOE1(3)   - ----ANAC58      <---------TOE2(3)              <---------ICU4                  <---------TOE2(3)   < ----ANAC58     --------->YAB1                 <---------ATHB12  --------->GLK1(2)                  -   tgcatcaaccatactctataagattatgttaagagtcttctacgtctaaatcatttttccaaaaaaaattctgttcaatttgaaggtttttgttagaaac  15798800               --------->YAB1              <---------YAB1           <---------AHL20(2)                            --------->TOE2(3)          --------->AHL20(2)                       --------->WRKY18(1)        ------->TEIL             <-----------GT1 --------->WOX13(1) -------->ARR11(3)              <-----------GT1<---------ATHB12 ---------ARR11(3)             <---------YAB1--------->WOX13(1)                                   --- -------->GLK1(2)     <-----------GT1      ------------>CBF                                       <--   aaaatctatgaattttatgaaaatttactgatttttatcggtttagacaatcagtcaaaccacaaatttcttccttcaactaggggacctattcatatag  15798900                                                                                           <---------                                                                                         <---------YAB1                                                                                   --------->YAB1                                                                                   <---------AHL20(2)                                                                                   <--------HAHB4                                                                                   --------->ATHB51                                                                                   <---------ICU4                                         <---------CCA1(2)                         --------->AHL20(2)                                       <---------ANAC58                            -------->ATHB1                                       <---------ANAC58                           <---------ATHB51                                       <---------ANAC46  --------->ARR14(2)       <---------ATHB12         ------->TEIL             --------->ALFIN1 <---------AtMYB61              --------->ICU4 --------->ANAC58             --------->ATHB12  <----------DOF2                 --------->WOX13(1) --------->ANAC58            <---------YAB1    <---------DAG2            <-----------GT1 <---------AHL20(2) ------>ZAT18            --------->ARR11(3) <-----------GT1             <-------TEIL <---------YAB1 < -------ZAT18          <---------YAB1<---------ANAC46    <---------ARR14(2)   ------------>CBF      -   tgaacgaaatgaattttgctaaaatatgattttgatttggggcgtatcaccttttggtggattttctagttagattcaccatcaattattttttattgtt  15799000                                                                                               <-----                                                                                      <---------AHL20(2)                                                                                     <---------AHL20(1)                                                  --------->TOE2(3)                  --------->AHL20(1)                                     <------------CBF                    <---------TOE2(3)  <--------                                   --------->AHL20(2)        <---------AHL20(2)   --------->AHL20(2) <---------AHL20(2)                <---------AHL20(2)      <---------AHL20(2)     <---------AHL20(2) ---CBF                            --------->AHL20(1)     --------->AHL20(1)  --------->AHL20(2) -----------TBP         --------->GLK1(2)      <-----------GT1     <---------YAB1 --------->YAB1 -------->AHL20(2)  --------->YAB1 <---------AHL20(1)     <---------AHL20(1)  <---------AHL20(2)   cattttataggtagtttttttctcataatccgtccattttattgatattttaccttgatatatatttttgttatagaggtttaattatatatttcttttt  15799100                                                             --------->AHL20(2)               <------MYB46(1)                            --------->AHL20(2)               --------->AHL20(1)           ===========                            <---------AHL20(2)               <---------AHL20(1)           <------ZmHOX2a(1)                           --------->YAB1                    <---------AHL20(2)           ===========     <---------TOE2(3)     --------->AHL20(2)          -------->P                 ------>MYB83<------MYB83     <---------TOE1(3)     <---------AHL20(2)----------->GT1--------->AHL20(2)    ------>MYB46(1) ------TBP           --------->YAB1        --------->At4g35610                  <---------MYB59 --DOF2              ----------->GT1    <------ZmHOX2a(2)   <---------ATHB12 <-----------GT1  -------   tatatttcaggttttattatctatagtaattaaaatggatggatcatcggaaaaaactaccaataaattagtatcgattctaccaaattataggattggt  15799200                        ---------->DOF2                  <----------DOF2                  ------>ZmHOX2a(1)                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              --------->ARR14(2)              ------->TEIL----------->GT1       <---------At4g35610 ======================HOX2a_HOX2a             ------->TEIL            --------->YAB1      <---------TOE2(3) =====================HOX2a_HOX2a         <---------AtLEC2  ---------->DOF2            <----------DOF2 ---->GT1     <---------ARR14(2)     --------->ZAT6    <-----------HVH21      --------->TOE2(3)   aagactcttggacatggatcctttgcgaaagtgaaattagcactgcatgtagctactggtcacaaagttgctatcaaaattcttaatcgctctaagatta  15799300                                               <-----------GT1                        <-----------GT1                 ---------->DOF2 <---------AHL20(2)                              ----------->GT1               <------ZmHOX2a(2) <-----------GT1    <----------DOF2            <------ZmHOX2a(1)   agaacatgggtattgagatcaaaggtatgtattatttacttcaattttgttactcttttttcatttgtacaaaagattagaggaggtataacacctctct  15799400                                                                              --------->ATHB51                                                                              <---------ICU4                                                                              <---------AHL20(1)                                                                              <--------ATHB1                                                                              --------->AHL20(2)                                                                      <---------YAB1               <-                                                                 --------->AtMYB61                <--                                      ------>ZmHOX2a(2)          ------->GAMYB--------->YAB1      ---                                     <------ZmHOX2a(2)          <---------MYB55(2)                <--                                     --------->CCA1(2)          --------->MYB46(3)               <---                                    --------->AGP1             --------->ANAC58                  <---                         <-----------GT1                       -------->P    <---------ATHB51    ----                        <<<<<<<<<<GT-3b                        --------->ANAC58 <---------YAB1   ----                  <----------DOF2   --------->ARR11(3)   --------->RAP2.6(3) <---------ATHB12 -------              <---------CCA1(2)     <---------ARR11(3) <---------GLK1(1) <---------YAB1    --------->YAB1   ------->TEIL------->TEIL     --------->ANAC46  --------->ANAC46    --------->ICU4      <---------YAB1   aaatgtatatatagatgtatctttatttttcttcacgagatctaataggtctacgagatttcggcaaccaccatgatcaataatttttggttttgataat  15799500                                                                    --------->GLK1(2)                                                          <---------YAB1                                                         <---------AHL20(2)                                                      <---------AHL20(1)  <-----------GT1                                     <---------ARR11(3) --------ICU4                                         --------->ARR11(3) -------YAB1                                          --------->AHL20(1) ------>AHL20(2)                                    --------->AHL20(1) -------AHL20(2)                                    --------->ARR11(3) ------AHL20(2)                              --------->YAB1         --------->ARR11(3)              < ------AHL20(1)       <---------ANAC46    --------->GLK1(1)    <---------AHL20(2)                   < ----->AHL20(1)<------MYB46(1)            <---------GLK1(1)<---------AHL20(2)               <-------- ----->AHL20(2)<------MYB83   --------->AHL20(2)    <---------ARR11(3)             --------->ANAC46 < -->AHL20(2)  --------->MYB59 <---------AHL20(2)    <---------AHL20(1)   <---------MYB52(1) <--------   ataattacaagtttatttggtatggattgtattttaatactgagaaatcagaaaaatatttttattttaaaatctgtttttttctacgaaaatactttat  15799600  Previous    Next  AGI:  At5g39440.1    Description:  SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); kinase. similar to AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) [Arabidopsis thaliana] (TAIR:AT3G01090.3); similar to AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11), protein kinase [Arabidopsis thaliana] (TAIR:AT3G29160.2); similar to AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11), protein kinase [Arabidopsis thaliana] (TAIR:AT3G29160.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); similar to SNF1-related protein kinase [Cucumis sativus] (GB:CAA71142.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); cont Range:  from: 15799135    to: 15801927    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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