Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->KAN4(2)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <----------TaMYB80                                                                                <---------GLK1(1)                      <-------PIF5                                              --------->GLK1(1)                      ------->PIF5                                              --------->KAN4(1)                     --------->TGA1a    <------NtERF2                           <---------KAN4(1)                     <---------TGA1a  <---------ANAC58                          <---------HSFB2a(1)           ------>ZmHOX2a(2)          <---------ANAC46                          --------->HSFB2a(1)          <------ZmHOX2a(2)           <---------ANAC58                         <---------ARR14(2)          --------->GLK1(1)          <---------LBD16                           <---------ARR11(3)          <---------GLK1(1)     <-----------HVH21                              --------->ARR11(3)         <---------AGP1      --------->ALFIN1                                  --------->ARR14(2)         <---------ARR14(2)  <---------ANAC58                                 --------->YAB1         --------->ARR14(2)  <---------ANAC58                          ------>NtERF2                <         <---------ARR11(3)  <---------ANAC46                         --------->LBD16      ----------         --------->ARR11(3)--------->ALFIN1             <---------ANAC46    <---------TOE2(3)   <----         <-----------ARR10 <---------ANAC46   <-----------GT1       <---------LBD16    ---------->DOF2   acaagaacaaggatctcagtggcacgagggtgtgtgtgaggcgggttttgaccatatggcgcatagtctatgcggaccaaggatattcccaaagtgttta  15701200                              ========================bZIP_DOF                              --------->TGA1a                              <---------O2                              --------->O2                               ------>NtERF2                          <-----------HVH21                        <---------ANAC58                         <---------bZIP60(1)                       <-------GAMYB            --------->ETT(2)  =============================================MYC_MYB            ------>ZmHOX2a(2) <---------TGA1a                      <---------ANAC58     --------->GLK1(2) <-------GAMYB                              <------MYB46(1)    <---------GLK1(2)  =================MYC_MYB                   <---------MYB46(3)        ---------   <xxxxxxxxxxxxxxxxsmallRNA(i)                                <---------ANAC58         --------->ARR11(3) --------->LBD16   <---------WRKY18(1)                         <---------ANAC58         <---------ARR11(3) xx>smallRNA(si3) --------->WRKY38(1)      <----------DOF2    --------->ZAT2           <---------GLK1(1) ---------LBD16xxxxxxxxxxxxxxxx>smallRNA(se3)     <---------YAB1  <------MYB83         --------->GLK1(1) ->GT1<---------At4g35610--------->bZIP60(1)   <---------YAB1 <---------ZAT2      ---------->DOF2 -------GT1<---------WOX13(1)xxxxxxxxxxxxxxxx>smallRNA(i)    ------>ZmHOX2a(1)  <------ZmHOX2a(1) <--   accctggaatctgatcgacattgactgttgtcacgttggattggactttgttattagtgattcctgcttggttgaggcctgaggaaaagaaatcttctgc  15701300                 --------->AtLEC2               <---------ANAC58               <---------ANAC58              ------>ZmHOX2a(2)            --------->ARR14(2)       <----------DOF2                                                   <---------AHL20(2)      <---------ANAC58      <---------YAB1                               --------->AHL20(2)      <---------ANAC58     -------->P                                  <----------DOF2  <---------ANAC58        <-----------GT1                           --------->GLK1(2)  <---------ANAC58    <-----------ARR10                             --------->ARR11(3)             -- >At4g35610 <---------ARR14(2)                                      <---------ARR11(3)           <--- --------DOF2<------ZmHOX2a(2)                                ----------->GT1<-----------GT1     ----   ctttgcttgctttggatccttgcaaaacttaccattcacaaaaactgcaagtagaaatattgtttcgaaaaatcttttattacaacttcaaatttagtca  15701400                      <---------ICU4                     --------->ICU4                  <---------AHL20(1)                  --------->AHL20(1)                  --------->AHL20(2)               --------->ATHB51                          <---------ALFIN1               <--------HAHB4                            --------->DEAR3(1)               -------->HAHB4                            --------->AtMYB61               <--------ATHB1                          ------->TEIL               <---------ICU4                         --------->ANAC46               --------->YAB1                       --------->ANAC58              --------->AHL20(2)                    --------->ANAC58              --------->ICU4                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2 <---------AHL20(2)                --------->ANAC46                  --------->ANAC46 ------->YAB1 <---------ATHB51        --------->MYB52(1)--------->MYB46(3)          <---------ALFIN1 ------YAB1   <---------YAB1  <---------ZAT6      <-----------GT1                 ----------->RAV1(1) ----->ICU4 --------->YAB1    ----------->GT1    --------->ARR14(2)       <---------YAB1   ttaataaaggagaataataattaattagtagagagttaagaaaccgagttatatacgcaccaccatttttagggtcatcaatggccacacagaagtcttg  15701500                                     <---------At4g35610                                  ---------->DOF2  --------->YAB1                                ----------------->AGL1<------ZmHOX2a(1)                          <---------ATHB12  <---------TOE2(3)          <------ZmHOX2a(2)--------->YAB1   <---------TOE1(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->ZAT18          --------->ICU4    --------->DAG2    <-----------------------TaNAC69(2) <---------ZAT18  <----------DOF2--------->AtMYB61 <---------LBD16                      <---------TOE2(3)   aagtggacttggatcatatgctttggcaatggtgaccaaagctgataaggttatcaggatgagagacatggacaccttcattttcaaacaaaggtttttt  15701600                                                                                              <------                                                                                              <------                                <---------ANAC58                                              <------                                <---------ANAC58                                              -------                                <---------ANAC46                                              <------                            <-------GAMYB                                                     <------                           --------->ALFIN1                                                   <------                       <---------ANAC46                                         <---------DEAR3(2)                  --------->CCA1(2)                                      ============================                 --------->ARR14(2)                    --------->ZAT2    ---------->DOF2   ----------              --------->HSFB2a(2)                      <---------ZAT2 <------ZmHOX2a(1)--------->ICU4              <---------HSFB2a(2)                      <---------At4g35610     <---------DEAR3(1)          <----------DOF2<---------ANAC46   <------ZmHOX2a(1)    <---------AHL20(2)<-----------HVH21 ---------->ID1  <---------ARR11(3)       <---------TOE2(3)    <-----------TBP<---------ORA47(1)-----   tttgttctaatgctttctagatatgtagtgtgttgtttgtgaatgaggaagcattcgagctcagtatttataggaaaaaggccggtgtcatatttgacgt  15701700     <---------ARR11(3) ---ANAC58                                                                                  <-------- ---ANAC46                                                                                 --------->AHL20(2) ---ANAC58                                                                                 <---------AHL20(2) -->O2                                                                                   <---------YAB1 ---O2                                                                                --------->AHL20(2) ---bZIP60(2)                                            --------->TOE2(3)            <---------AHL20(2) ---TGA1a                                      <---------At4g35610                  <----------DOF2 ===bZIP_DOF                                   --------->At4g35610              --------->WOX13(1) ->HVH21                                  --------->ALFIN1   <-----------GT1  ------------>CBF<------ ---->ALFIN1   <-------TEIL           ---------->DOF2   ----------->GT1     --------->YAB1--------->YAB1   ggtccaagttattcatatacattttgtaactcacatgtttcaaagtggcagttcaaaaacgtttaaccagtctatcgataatcaatcttttattaaaatt  15701800               <---------ATHB12     <-----------GT1     --------->ANAC46   <---------ANAC58       <------------CBF   <-----------GT1      <---------ANAC58 ----------->GT1            ------->TEIL -YAB1------------>CBF --------->ZAT2--------->ATHB12            --------->AtLEC2        <--------P ------CBF ------------>CBF       <------------CBF      <----------DOF2                ----------->GT1   ggattttacacaattcaatgaccagagcttgcagtttattgatttgtaatattgttttctttgtatcatgcaccttctagtttcaagtctggtagaatat  15701900                                                                              --------->TOE2(3)                                                                             --------->ANAC46                                                        <---------ZAT14      --------->ANAC55(1)                                                        --------->ZAT14      --------->ANAC58                 <---------HSFB2a(2)                   <---------ZAT6        ----------->GT1                 --------->HSFB2a(2)                   <---------REM1(1)     --------->ANAC58                 --------------->AtSPL8              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->AHL20(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <---------AHL20(2)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------           <---------ICU4                          --------->ZAT14           <---------ANAC55(2)  <xx           --------->ATHB51                        <---------ZAT14           --------->ANAC55(2)  ---           <--------ATHB1                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        <-------          <---------ATHB51                 --------->AHL20(2)               <-------TEIL    <--------          --------->ICU4                   --------->AHL20(1)         --------->At5g28300   <--------     ----------->GT1       <----------DOF2 <---------AHL20(2)        ----------->GT1       ------>ZmHOX2a(1)  --------->ALFIN1      --------->ARR11(3)--------->AHL20(2)         --------->YAB1       --------->TOE2(2)   atgtgtgtggtaataatttctagtactatctttttcttaagaaaaaaaattagagtagtgtagcagtttaatggtaaatacgtaaattccatcctacgta  15702000        --------->ANAC58        <---------At4g35610        --------->ANAC58        --------->At4g35610                                       <---------ANAC58        --------->ANAC46                                          <---------ANAC58       ------->TEIL                                             <---------AHL20(2)   >>>>>>>>>>ATML1                                              <-----------GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     --------->AHL20(2)   >>>>>>>>>>PDF2                                          <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ----------->GT1                          <----- ->ANAC55(2)                                         --------->DAG2                            ------ xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 ---------->DOF2                           ------- -------->GT1                                  --------------->AGL15                  <-----------GT1 --ANAC55(2)                 <---------AHL20(2)<---------------AGL15               --------->YAB1 -TOE2(2)                    <---------YAB1   ----------------->AGL3              --------->AHL20(2) -TOE1(2)         --------->YAB1            --------->ZAT6 --------->ICU4         <---------AHL20(2)   ttgtaaatgcacctcactattcataacattttttattagttgtttatcactaaataaagttattatttacttgttaatgaacaattaataacttcattta  15702100  Previous    Next  AGI:  At5g39180.1    Description:  germin-like protein, putative. Identical to Germin-like protein subfamily 1 member 19 precursor [Arabidopsis Thaliana] (GB:Q9FL89); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G39150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17570.1); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Germin; (InterPro:IPR001929); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 15700692    to: 15701581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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