Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <-----------HVH21                                                 <---------ARR11(3)                   <------MYB46(1)                                                <---------CCA1(2)                     <------MYB83                                       ---------->DOF2                              <--------P       <-------TEIL         ----------->HVH21 <---------DAG2                   <-------TEIL    ----------->GT1       <---------ANAC58    <----------DOF2               --------->At4g35610     <    <---------MYB46(3)    <---------ANAC46 <---------ARR11(3)               <---------At4g35610 ----- ---->GT1                 <---------ANAC58 --------->ARR11(3)           ----------->RAV1(1)    <-----   gataagcggttcatattcacgagtaaggccgtgaaccatagcaaagacctttatcttctctgcaactggacttcccacagatgcaagttggtcacatatg  15667600                                                                                                    -                                                                                        <---------REM1(1)                                                                                        <-----------RAV1(1)                                 --------->HSFB2a(2)                                   --------->ARR11(3)                                 --------->LBD16                                      <---------At4g35610                             --------->ARR14(2)                                   <-----------HVH21 -                     <---------At4g35610                                         --------->O2     ---      --------->REM1(2)      <---------ARR14(2)                   <------MYB83  --------->LBD16   <-- -----------GT1      --------->At4g35610   --------->At4g35610    <------MYB46(1)<---------ANAC46---- ---->YAB1        ---------->DOF2<---------HSFB2a(2)      <---------ANAC58   --------->SPL7      ---- ----YAB1  --------->ANAC46  --------->GLK1(2)            <---------ANAC58--------->AtMYB61      ----   ataaaccatgtagacgacgttgaagctcaaaaatccgagaagatgagatgcgattgaagtgcttagctaggttagaccataccgcgtgagatgttgcaga  15667700                                                        ----------->RAV1(2)                                                       --------->MYB52(1)                                              ------>NtERF2                 --------->ZAT2      ------->GAMYB                          --------->O2                   <---------ZAT2          -     --------->ANAC46                        --------->bZIP60(2)           --------->ANAC58         <  --------->MYB46(3)                         --------->ANAC46              --------->ANAC58         - ----->MYB83                                 --------->ANAC58         --------->RAP2.3(3)           < ----->MYB46(1)                              --------->ANAC58         --------->DEAR3(1)      <------ ------>MYB46(3)                           <---------ALFIN1          --------->ERF1       --------->ARR14(2) -------MYB59                             --------->ATERF1(1) ------>ZmHOX2a(2)           <---------ARR14(2) ----->ANAC58  <------ZmHOX2a(1)--------->ANAC58      <---------ALFIN1--------->RAP2.3(2) <---------GLK1(2) ----->ANAC58<---------TOE1(3)  --------->ANAC58      ------->GAMYB  --------->RAP2.3(1)--------->LBD16 ----->ANAC46<---------TOE2(3)  --------->ANAC46     --------->MYB46(3)------>NtERF2  <---------LBD16   cccaacaacgacactaaggatgtcttcagacaacaagccaaggagccacgccataaccacctgatccaagcgcagccaagcttgatgctccggattcgag  15667800                                                           ------>NtERF2                                                         --------->RRTF1(1)                                                         --------->ATERF1(1)                                                        <---------RRTF1(1)                                                        <---------ORA47(2)                                       <----------CDC5  <---------DEAR4(2)                                      --------->At4g35610<------NtERF2           >>>>>>>>>>>>>>>>>LFY       --------->ZAT2    <---------ATERF1(1)          <---------bZIP60(1)         <---------ZAT2    <---------RAP2.3(1)          --------->bZIP60(1)         <---------At4g35610--------->RAP2.3(1)       ----------->HVH21         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <-----------HVH21         --------->MYB52(1)     <---------RAP2.3(2)    <---------DEAR3(1)         <------ZmHOX2a(1)       <---------RAP2.3(3) <---------GLK1(2)           --------->LBD16        <---------ARR14(2)               <---------WRKY18(1) -------->At4g35610         <-----------RAV1(2) <---------At4g35610                 --------->WRKY12 ---------ZAT2              <---------LBD16 --------->ALFIN1<------NtERF2           --------->WRKY38(1) -------->ZAT2              <---------HSFB2a(2) --------->At4g35610     --------->TOE1(2)----------->HVH21 ---------At4g35610       --------->PCF5  <---------ANAC46--------->DEAR3(1)        ----------->HVH21 ---HSFB2a(2)        <---------ANAC46--------->ALFIN1  <---------DEAR3(1)   ---------->DOF2   acagcttcggtgacaccattgttttgtggtccaggaacggtgctgagtggagcagagacggcgccattgacaaacccaagaagcccttgaccggacagaa  15667900                                     <------MYB46(1)                                     <---------ANAC46                                     <------MYB83                                    --------->MYB52(2)                                    --------->MYB46(2)                                   --------->SPL7                                  <---------MYB52(1)                                 <---------SPL7                        --------->CCA1(2)                       --------->ARR11(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <---------ARR11(3)      <---------At5g28300                 <---------HSFB2a(2)<---------DEAR3(1)                                        <------                 --------->HSFB2a(2)<---------MYB46(3)           <---------ARR11(3)           <------             --------->GLK1(1)  <---------ANAC58                 --------->ARR11(3)      <---------ZAT6             <---------GLK1(1)  <---------ANAC58   ----------->HVH21                 <---------ZAT14   acgattcaaattgggatttccataagatatagtttcgttcggtgagtttcacagtgacacagtttgagatgtttagagatggaagagagtagagttccat  15668000                                                               <----------DOF2                                                              <---------ANAC58      <---------AtLEC2                                        <---------ANAC58  --------->KAN4(2)                                       <------------CBF <---------KAN4(1)                             <---------RVE1(1) <---------MYB46(3)                            <---------CCA1(1) <---------HSFB2a(1)                          <---------ARR11(3)               xxxxxxxxxxxxxxxxxxxxxx --------->HSFB2a(1)                          --------->ARR11(3)          <---------AHL20(2) --------->KAN4(1)          --------->AHL20(2)--------->AHL20(1)          --------->AHL20(2)        < ---ANAC46              ---------->DOF2       <---------AHL20(1)      <----------DOF2              <- ---AtLEC2  *TSS      <---------YAB1 --------->GLK1(1) <-----------TBP<---------DAG2  ------------>CBF   ggattgttccatggctctgataccatgaaagtaaatgagaaatcgaaagatatttgtttatattgctttcaactttttaattttggattacaatgaggct  15668100                                                                                      <---------ANAC46                                                                                     ------>NtERF2                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                 --------->ANAC46                                                                               --------->ANAC58                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <-----------HVH21             <-------TEIL  ------>MYB83               <---------ANAC46  <-----------HVH21  --------->AHL20(2)       ------>MYB46(1)    --------->GLK1(2)         <-----------TGA1  <-----------TBP        <---------MYB59      --------->ARR14(2)<------MYB46(1)--------->ANAC58 x>smallRNA(i2)       <-----------GT1     <------NtERF2        --------->MYB59 --------->ANAC55(2) -----------TBP  --------->ATHB12       <---------DEAR3(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------DOF2--------->REM1(1) ------->TEIL  <---------ARR14(2)<------MYB83   <---------ANAC55(2)   gcttttatatagagctacatgatttaacctaatgtatccttggctgcgaatttgtctcttggaatttggttaagcgtcatcacgcgctgcgagtgcctca  15668200                                                                                     <---------SPL7                                                                              xxxxxxxxxxxxxxxxxxxxxxx                             --------->DAG2                                  --------->WRKY38(1)                         <---------ZAT6                                      ----------->HVH21                       --------->SPL7                                      --------->At4g35610      <                     <---------SPL7                                        <---------At4g35610   <---                <---------At4g35610                                      <---------ANAC46        ----                --------->At4g35610                                      <-----------RAV1(2)   <-----             <---------MYB52(1)                --------->HSFB2a(2)       ============================            <----------DOF2 ---------->DOF2    <---------HSFB2a(2)  =================RAV    <--------         ------->TEIL<---------ZAT14      <---------HSFB2a(1)       <-----------RAV1(1)------->TEIL < xxxxxx>smallRNA(si3)--------->ZAT14      --------->HSFB2a(1)   <---------ANAC58   <---------MYB52(1) xxxxxxxsmallRNA(se3)<---------SPL1(2)    ------>ZmHOX2a(2)     <---------ANAC58  <-------GAMYB<-----   aatcggttttgaacctttagctccgtactgtaaggcgatagggatcgttctgcaactctgtttttgtcttgtgttgcaggtgaccgttgtacgtctgtgg  15668300         <---------At4g35610  --------->LBD16 >smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------LBD16     <------MYB83 ------PCF2         <------MYB46(1) ----->ATERF1(1)   <---------AtMYB61 ----RAP2.3(3)     xxxxxxxxxxxxxxxx>smallRNA(i) ===RAV  --------->At4g35610 ---RAV1(1)       <---------MYB55(1) ------NtERF2    <---------MYB52(1)   <----------DOF2                                     ----------- ----ZAT18<----------CDC5<-----------RAV1(1)     ---------->DOF2   --------->MYB52(1)   <----------DOF2   gctccggtttgggctgagcgtttggttttgttggattgggctttgttgtccgaaagcccaattgagaagtaacgtcgttttgctgtttagctttgacatt  15668400                                               --------->ATHB12                 --------->ANAC46  ------>ZmHOX2a(1)        <----------DOF2                   <------MYB83 >HVH21       <-------TEIL <-----------GT1   <-----------TGA1            ----------->GT1      <------MYB46(1)   ctctatttcactcacatacacacgatttttttcaatcctctcttcttcgtcattgactcaagctttcacttggaagagtagaaaggttatggcatttggt  15668500  Previous    Next  AGI:  At5g39095.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.1e-250 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 15663579    to: 15668012    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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