Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->ZAT6                                                                    <---------CCA1(2)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                               <---------CCA1(2)                                                             <---------AHL20(2)                                                             --------->YAB1                                       ------->TEIL          --------->AHL20(2)                    --                                  <----------DOF2         --------->YAB1               <---------YAB1                         --------->MYB52(1)              <---------AHL20(2)      <---------YAB1    <-                     ----------------->AGL1              --------->AHL20(2)<---------ZAT14        ---  <-------GAMYB      ----------------->AG              --------->TOE2(3)   --------->ZAT14       <---   tttcggttgagaccacctagactgcctaaacgggccctttgaacgttttttttaaaacattaattatatcttatctctatactattattctcattatcca  15605600                                                                                       ------->MYC3                                                                                       <-------MYC3                                                                                    <---------ALFIN1                                                                                  ----------->RAV1(1)                                                                                  <---------ALFIN1         <------MYB83                                                         --------->ANAC58         <------MYB46(1)                            <-------TEIL              --------->ANAC46         ----------->GT1                           --------->CCA1(2)          --------->ANAC58  <----  <-----------GT1                 --------->ANAC46<---------ARR14(2)        <---------ALFIN1   ------ ------->YAB1             <---------ANAC58        --------->ARR14(2)    <-----------GT1------->MYC2 --------ICU4             <---------ANAC58<---------ATHB12------>MYB46(1)   --------->ANAC46   ------ ------>AHL20(2)     <---------ANAC58     <<<<<<<<<ARR2--------->ANAC46<-----------GT1 <-------MYC2 ------MYB52(1)      <---------ANAC58   --------->WOX13(1)------>MYB83--------->AHL20(2) <-------TEIL   ttaattacatttggtttatatagtcgtgtcttatctaagaaacaatcaaacagatacaccaaatgctaacaatttaacacaccccaacacgttcacattg  15605700                                                                       <---------AHL20(2)                                                          <---------MYB52(1)                                                         <-------GAMYB<---------AHL20(2)                                                        <---------ANAC58                                                        <---------ANAC46                                                        <---------ANAC58                      <---------ATHB12              <-------MYC3      <---------AHL20(1)        <---------HSFB2a(2)                         ------->MYC3      --------->AHL20(2)        --------->HSFB2a(2)  ------->TEIL          --------->O2    --------->AHL20(2) ------>MYB46(1)      --------->AHL20(2)         <---------ALFIN1 <---------AHL20(2) ------>MYB83    --------->ANAC58            --------->ZAT18      --------->ICU4 -----WRKY18(1)  --------->ANAC58            <---------ZAT18      <---------ATHB51 --->WRKY12     --------->WOX13(1)           --------->ZAT14      --------->AHL20(2) --->WRKY38(1)<---------ATHB12               <---------ZAT14 ----------->GT1   accttcccttcgagtaatcactcaataaatgtatatcaaacttcaagtgcaccacgtttcgttgggaaataattttttttttttcatcaacttgaatttt  15605800                                                                                <---------ANAC46                                                                                <---------ANAC58                                                                                <---------ANAC58                                              --------->ANAC58                <---------AHL20(2) ----                                              --------->ANAC58                --------->ARR11(3) <---                                         <-----------GT1                <---------ANAC55(2)      ----     --------->YAB1                  <----------DOF2                  <-----------GT1            ---- --------->AHL20(2)           <---------AHL20(2)             <-------TEIL <---------AHL20(2)     ---- <---------AHL20(2)           --------->AHL20(2)      --------->ARR11(3)--------->ANAC55(2)      ----   gaattaaacataatttgttcaagaatgtttttttaaatacttttaaccaagtcaaatatcaagttcattgtattacttaatttcttggattagttcaaca  15605900            --------->AHL20(2)           ----------->TBP                                 --------->TOE2(3) ----->ANAC46                                         ------------>CBF ------ANAC55(2)                            <---------CCA1(2) ----->ANAC55(2)                          <---------CCA1(2)--------->YAB1                      <----- ----->ANAC58  <------------CBF         <---------ANAC58  <<<<<<<<<ARR1                <---------CCA1(2) ----->ANAC55(1)                        <---------ANAC58  <<<<<<<<<ARR2                ------>ZmHOX2a(1) ----->ANAC58<---------AHL20(2)--------->YAB1    ------------>CBF       --------->YAB1 *TSS<---------   cgtaaactcatctataaaattgaagtctatgtctcataagtttcttatctcttcaatacaatcttattccacaaacataaaccctcttcctatcttttta  15606000                             <---------ZAT18                                  --------->ANAC46                             <---------ZAT14                                  --------->ANAC58                             --------->ZAT14                                  --------->ANAC58    <---------ATHB12         --------->ZAT18             <---------MYB52(1)------>ZmHOX2a(2)    --------->ICU4   <---------ANAC58            --------->ZAT6      <---------At4g35610 ----AHL20(2)        <---------ANAC58          <-----------GT1     <---------ANAC58                <- -DOF2            <---------CCA1(2)         <----------DOF2        <---------ANAC58          <-------   atggcaatgaagagtctctcatttcttgcagtgctctctctcttggctttaacacttccattagccattgcttctgatccaagccaacttcaagactttt  15606100             --------->AtMYB61            --------->ANAC46                                              --------->YAB1          <---------ALFIN1                                              <---------ARR11(1)        ------>NtERF2                                                   <---------ARR11(3)       --------->DEAR3(1)                 <---------WOX13(1)   <---------AHL20(2)    <---------DAG2     ------>NtERF2                      --------->ATHB12       <---------AHL20(1)    <----------DOF2   --------->At4g35610                 <---------YAB1          --------->AHL20(2) --------->ZAT6   <---------At4g35610                 --------->ICU4       --------->YAB1--------->TOE2(3)   <------NtERF2                 <-------TEIL     <---------ICU4        --------->ARR11(3) ----------HVH21                 ------->TEIL    <---------ATHB12      <---------CCA1(2) ---DOF2----------->RAV1(1)<------NtERF2<---------ICU4      --------->AHL20(2)  <-----------GT1   gtgtcagcgccaacacctcagccaatggcggtatgtacatgatgattgcaaatcattttcaataaaaaatttcatatcttaataacactttttcttcttg  15606200                                     <------ZmHOX2a(1)                                   --------->ANAC58                                   --------->ANAC58                                 <---------AtLEC2                               <---------HSFB2a(2)                               --------->HSFB2a(2)                            <---------ARR14(2)                            --------->ARR14(2)                          --------->HSFC1(2)              --------->At4g35610                          <---------HSFB2a(1)          <---------At4g35610      <-----------GT1     --------->HSFB2a(1)          --------->At4g35610  --------------->AGL15   <---------HSFC1(2)     <-----------HVH21  <---------------AGL15   ----------->ARR10  <---------ZAT2        <----------DOF2         --------->ANAC58 <---------YAB1         ---------->DOF2   ---------->DOF2 <---------At4g35610              --------->ANAC58   gttactattttcagtttttgttaatggaaagttctgcaaggacccaaagctggtcacagcagatgacttctttttctcagggcttcaaactgcaagaccc  15606300                               <------NtERF2                           --------->At4g35610                       <-----------HVH21                     <-----------HVH21    ------->GAMYB                <---------ETT(2)         <---------MYB111(2)                                       <-                --------->WRKY38(1) --------->YAB1                                                 --                --------->ETT(2)<---------WRKY12                                                  <--                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <--                ----------->HVH21   --------->TOE2(3)                                            ----             <------MYB46(1) --------->RAP2.3(2)                                                <----             <------MYB83  <---------At4g35610                        --------->HSFC1(2)        =====             <---------ANAC46--------->RAP2.3(3)                      --------->HSFB2a(1)       =====            --------->MYB55(2)<---------RAP2.6(3)                     <---------HSFB2a(1)       -----            <---------MYB46(3)<-----------HVH21                       <---------HSFC1(2)     <-------          <---------MYB52(1) --------->RAP2.6(2)         <-----------GT1   --------------------->WRI1         <-------GAMYB----------->HVH21  --------->MYB46(3)         <---------GLK1(2) --------->ICU4   attactagtcccgttgggtcgaccgtgacagccgtcaatgttaacaaccttcttggattaaacactcttggaatctcccttgtccgtattgattatgcgg  15606400                              <-------MYC3                              ------->PIF4                              <-------MYC4                              ------->MYC3                              <-------MYC2                              ------->MYC2                              <-------PIF4                              <-------PIF5                              ------->MYC4                             --------->PIF3(3)                           <------------OsbHLH66                           <---------ALFIN1                          --------->MYB46(3)                         --------->ANAC58                        ------>MYB83                        ------>MYB46(1)                       <---------ALFIN1                      --------->MYB46(3)                      <---------MYB55(2)                      <---------MYB111(2)                      --------->DEAR3(1)                     --------->ANAC46      ------>ZmHOX2a(2)              =========================================MYC_MYB              =========================bZIP_bZIP              --------->ZAT2 <---------PIF3(3)              --------->O2--------->DEAR3(1)     <---------MYB46(3)              --------->bZIP60(2)        --------->ARR11(3)              --------->TGA1a==========================MYC_MYB             ------>MYB46(1) --------->TGA1a   <---------ANAC58             ------>MYB83--------->ANAC58<---------ARR14(3)            <---------ALFIN1 --------->O2--------->AGP1  ======================MYC_MYB          <---------ARR11(3)  =====================================MYC_MYB <-------GAMYB  ------->GAMYB      --------->ANAC58    --------->ARR14(3) --------DOF5.7(2)   --------->ANAC58    <---------ARR14(2) ------->MYB52(1)  xxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------WRKY12--------->ANAC46------->PIF5<------ZmHOX2a(2)              <---------TOE1(2) -------WRKY38(1)  <---------ALFIN1     --------->GLK1(1)                <---------TOE2(2) ----->DOF5.7(2)----------->HVH21       <---------GLK1(1) --------->ANAC58 ---GAMYB  --------->MYB46(3)<---------O2--------->ARR14(2)          --------->HSFB2a(2) ======================================MYC_MYB <---------ANAC58<---------ALFIN1 =======================MYC_MYB        ----------->ARR10  --------->ANAC46                    ------- ---->At5g28300--------->AtMYB61  ----------->RAV1(1)     --------->ANAC58      <-----------HVH21<--- --LBD16  --------->DEAR3(2) <---------TGA1a  <---------MYB46(3)     <---------HSFB2a(2)    <--------   ttaacggacagaacccacctcacacccacccacgtgccacagagatcttggttgtcgaacaaggaacacttctcgtagggtttgtcacatcaaacccgga  15606500  Previous    Next  AGI:  At5g38940.1    Description:  manganese ion binding / metal ion binding / nutrient reservoir. Identical to Germin-like protein subfamily 1 member 11 precursor [Arabidopsis Thaliana] (GB:Q9FMA8;GB:Q52K86); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G38930.1); similar to germin-like protein 3 [Vitis vinifera] (GB:AAQ63185.2); contains InterPro domain RmlC-like jelly roll fold (InterPro:IPR014710); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Germin; (InterPro:IPR001929); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051) Range:  from: 15605987    to: 15606896    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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