Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   <-                                                                                           --------->ICU4                                  --------->ZAT14                                          <---------YAB1 ---------YAB1                    --------->REM1(2)                                      <--------HAHB4 ---------GT1          <---------MYB46(3)                 <---------WRKY18(1)           <---------YAB1 ------>YAB1         <---------ANAC46        <----------DOF2                      <---------ARR11(3) ------YAB1       <---------MYB52(1)         --------->TOE2(3)<----------DOF2     <---------ARR14(2) ----ICU4        <-------GAMYB    <---------ZAT14     ------>MYB46(1)             --------->ARR14(2) ---YAB1        <-----------RAV1(1)   <---------ZAT6  -------->P                 <------ZmHOX2a(1)<-- -->ICU4 <---------At4g35610     --------->ALFIN1     ------>MYB83         --------->YAB1--------->YAB1   ttacaattttgagctcttctgttgtttgttatcaagtgtagagataactttagaccaacttgacctttattcgacaatagtcaggatactattattatta  15588300                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                          --------->ZAT2                                                                             <---------GLK1(1) ------->ARR14(2)         <---------ARR11(3)                                <---------ARR14(2) --------ARR14(2)         --------->ARR11(3)                      ----------->RAV1(1)     <---------ZAT2 ----ZmHOX2a(1)       ---------->DOF2                    --------->TOE2(3)  --------->ARR14(2)   ggatacttacaacttcttaaactcgaaagacattttgttgttagaatttgaacataaatccataactccaacaatgtggaaatgctaggcttagctcgga  15588400                                         <------MYB83                                         <------MYB46(1)                                        <---------AtMYB61                                        --------->MYB111(1)                              <---------ANAC58                       --------->ANAC58 ->ANAC58                     <---------ANAC58<---------ZAT6         --------->ANAC58          <----- ->ANAC58            ---------->ID1  --------->MYB52(2)   --------->At4g35610             ----------- -LBD16   <-------TEIL--------->ETT(1)<-------GAMYB       <---------At4g35610      ------>ZmHOX2a(1)   acaacttaaaaattcattcgattgtcgcaatttcttggtgagttggtagtataaaaacttagcagaaaatcaagaaacaaacttcctaagagatgtaaat  15588500                      ---------->DOF2                  --------->LBD16                  ------>NtERF2               ------>NtERF2               <---------At4g35610            --------->At4g35610            <---------At4g35610                                --------->YAB1      <---------YAB1 ----ARR14(2)--------->ATERF1(1)                           --------->ICU4      <----------DOF2 >GT1       --------->ZAT2                             <-----------HVH21    <---------TOE1(3)   ctgtatgcccttggtgctgccgagaaaagaaatggtttttgtatacaaaaatgtatgggtcacaattagaataagtttaagctttataatcgaaacgttt  15588600                                       --------->ANAC58                                       --------->ANAC55(2)                         ---------->DOF2                        <---------AHL20(2)                                                <------ZmHOX2a(2)                ----------->GT1        --------->ANAC58    <---------TOE1(2)      <---------ANAC58            --------->AHL20(2)         --------->ANAC46    --------->LBD16        <---------ANAC58<--        --------->AHL20(2)           <-----------GT1     <---------LBD16  --------->AtMYB61    ------    --------->ICU4      --------->AHL20(2)   <----------DOF2----------->GT1  ---------->DOF2 --------   ggggtcataactaaatatatgtaaaattaaagggactatttacgaaactttctgtttttccctggttaaatttcgaccaaaaaggcttatggatcaaaag  15588700                                             --------->HSFC1(2)                                          <------ZmHOX2a(1)                    --------->ARR11(3)                                  <---------YAB1                               <---------ARR11(3)                                 *TSS    --------->ANAC46  <---------DAG2----------->GT1     <----------ID1          ------>ZmHOX2a(2)             <----------DOF2     --------->GLK1(2) -------------------WRI1     ====================HOX2a_HOX2a            --------->TOE1(3) --->DAG2             ---------->DOF2  <---------LBD16 <---------ZAT18------->TEIL -->DOF2 ---------->DOF2  <------ZmHOX2a(1)  <---------HSFC1(2)    <---------MYB52(2)   gtagaagaagacaaagacgagagagaaaggatcgctattattcaggaaacttcattttgcactttttcgacgaacctgaaaaatcttcaattttagaatt  15588800                  <---------TOE1(2)                 ------>ZmHOX2a(1)                 --------->LBD16                <---------LBD16            --------->KAN4(2)                 <---------TOE1(2)           --------->HSFC1(2)         --------->ARR14(2)           <---------HSFB2a(1)        <---------GLK1(2)           --------->HSFB2a(1)        <---------ARR14(2)           <---------HSFC1(2)      --------->HSFB2a(2)                                  <------------       --------->LBD16             <---------HSFB2a(2)                            <---------MYB52(1)     <---------LBD16           <---------ANAC58            ---------->DOF2    ------>ZmHOX2a(1)------    --------->MYB52(1)         <---------ANAC58         --------->YAB1    --------->ARR14(2)   <-----   agtcaataccggaaaattcctgggttttctcttgcttctggattttctcaggtctctatcacaaaggtactcatcgattcctctgttttttgttttcctt  15588900                --------->ATHB12                <---------ICU4               <---------YAB1              <---------ARR11(3)              --------->ARR11(3)             --------->YAB1                     <---------At4g35610            <---------YAB1          --------->YAB1       <----------DOF2              <---------ICU4 ------------ANAC81                <---------ATHB12         ------>ZmHOX2a(2) --------------->WRI1        <-----------GT1    ----------->RAV1(2)     --------->YAB1         <----- -----DOF2--------->YAB1  <---------YAB1        --------->At4g35610    <---------YAB1     <---------At4g35610   tgaaagtttctttgatgatcattggattttgataccattcattactgatcatctgatgttgatcgatgagcttatgatggtttttgggtttcatcggatt  15589000                                      --------->AHL20(2)                        <----------DOF2                       <---------ANAC58            --------->TOE1(3)                       <---------ANAC58            --------->TOE2(3)            ---------->DOF2         --------->TOE2(3)          ----------->HVH21  <---------ANAC58   ------->TEIL  <----------DOF2 <-------TEIL--------------->AtSPL8------>ZmHOX2a(1)                           <---- ----WOX13(1)    <--------P  <---------ANAC58<---------ATHB12                                   <----   gatgctttttatctgaaaggttgatgcttttgctcgtacattaaacaatgaatccttaaaaaaactgtttttttttgctcgaattgtatagttttgtgat  15589100                                    <---------HSFB2a(2)                    --------->ALFIN1                                    --------->HSFB2a(2)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <------MYB46(1)                <---------At4g35610  <------ZmHOX2a(1) -----bZIP60(2)                <------MYB83            <---------------AGL15--------->REM1(2) -----ANAC46              --------->ATHB12----------->GT1   <-----------RAV1(2) <------ZmHOX2a(1)   gtgtattagcttattcaagtttagttattcatttggttttagaaatgttatatgtttctcttacaggtgattctactgtgtaggaggaacaagagttttg  15589200  Previous    Next  AGI:  At5g38890.1    Description:  exoribonuclease-related. similar to unknown [Populus trichocarpa] (GB:ABK93772.1); contains InterPro domain S1, RNA binding; (InterPro:IPR003029) Range:  from: 15586710    to: 15588374    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g38895.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G02290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49214.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 15588733    to: 15590756    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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