Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->ATHB12                                           --------->YAB1                                           <---------ICU4                                           -------->HAHB4                                          <---------YAB1                               --------->MYB52(1)           --------->ATHB12   <---------ATHB51    --------->LBD16           <---------AHL20(2)                                                    <   <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <---------ICU4                                 --------->MYB46(3)   <---------ANAC46          --------->AHL20(1)     --------->GLK1(2)                ----------->RAV1(1)   <---------O2             --------->YAB1--------->ICU4  ------->TEIL       <------ZmHOX2a(2)      <  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ICU4 --------------->AtSPL8<---------ARR11(3)    <--   tggacccgtggaagcattggaatgctctaaaaataatggacataatgatagcctaatctgtacttcgaacgaagacaagatcgaagccaacaaatacaca  15575800                                                    --------->At4g35610                       <------ZmHOX2a(1)                                                 <---------HSFC1(2)                  --------->ANAC58                                                 --------->HSFC1(2)         --------->At4g35610 -----------RAV1(1)                              <---------HSFB2a(1)        <---------At4g35610 ---------MYB46(3)                              --------->ANAC58         <------ZmHOX2a(1)   -------- -------GLK1(2)                                 --------->ANAC58   <---------LBD16   --------->ANAC58   gattgttggagttggctcatcatctgttttgatgtctcccatattgtgagaagcatcggaagtttagtttggggaggaagatgagagaagcaagaaggag  15575900                                                        <----------DOF2                                            --------->GLK1(2)                   <---------ZAT14                                            <---------ARR11(3)                 <----------DOF2                                            --------->ARR11(3)               --------->At4g35610                                            --------->ARR14(2)               <---------At4g35610                                            <---------ARR14(2)    <---------ANAC58             <-----       --------->ALFIN1------->TEIL        <---------GLK1(1)      <---------ANAC46          ---------   ---------->DOF2     <---------ARR14(2)  --------->RVE1(1)      <---------ANAC58          <-------- <---------YAB1        --------->ARR14(2)<---------GLK1(2)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-- --->GT1         <---------SPL7     <------ZmHOX2a(1)<-----------GT1      <---------At4g35610--------   aatatcaaagtggagaagtcgaacgaatttgcaagtgaggaaagaatatctgtttatactttacaatgacttgtttggctgcttcactgagttggatatg  15576000                                                                ----------->GT1                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                          <---------LBD16 ----YAB1                                               <---------SPL7                             -- >ARR14(2)                               <---------YAB1 <---------ZAT14                           --- -ARR14(2)                             <---------ICU4   --------->ZAT14                        ------ -------YAB1                          --------->ICU4  <---------------AtSPL3                  ------- ->CCA1(2) --------->YAB1         <---------At4g35610<---------ANAC46                       ---------   atgagtagtagcatcatactgtttgaattcggatgcagcaaatattactgaaatgcagtgtacggatcgtgaaaactgacaaaattgatagtagcaacaa  15576100      <---------AHL20(2)     <---------AHL20(2)     --------->AHL20(2)                                                        <-----------GT1 ------->At5g28300                                                            <-----------GT1 -------->GT1                                                         <-----------GT1 <----------DOF2 ----->RAV1(1)                                               --------------------->WRI1           <-- -->MYB46(3)                            <----------DOF2   <---------ARR11(3) <---------AHL20(2)<----- -->RAV1(1)                    <---------AHL20(2)<----------DOF2 <---------AHL20(2)   *TSS <---------   cagtgaattaatttgggcctgaaactatccgttttaaatgggcttttgagcctttcacattatctatgtaattttcgattttatcttccttttcttttca  15576200                                                              <-----------HVH21                                                        <---------HSFB2a(1)                                                        --------->HSFB2a(1)    --------->LBD16                    --------->ANAC46                    --------->HSFC1(2)    <---------LBD16                 ------>MYB46(1)                        <---------HSFC1(2)   <---------LBD16    -----  <---------HSFB2a(2)                                 <------NtERF2     <---------ALFIN1      <------  --------->HSFB2a(2)          --------->YAB1        --------->LBD16 --------->ANAC46        -------- -------DAG2     ------>MYB83 <---------ATHB12      --------->DEAR3(1)------>NtERF2         --------- ------GT1     --------->AtMYB61                   <---------LBD16  --------->ZAT14         --------- -DOF2    <---------ALFIN1  --------->WOX13(1)   --------->ANAC46   <---------ZAT18         ---------   ccttctcgacgaacacacctacacaaaaatcaatcacagtctctgtctcactcgccggagtttcggtcactgcgccatctccggggtcgagttcgtcgta  15576300                                                                          --------->ICU4                                                                    --------->HSFC1(1)                                                                    <---------HSFB2a(2) ---->SPL7                                                          --------->HSFB2a(2) ---SPL7              <---------ARR11(3)                   <---------ANAC58 <---------GLK1(2) ->TOE2(1)            --------->ARR11(3)                   <---------ANAC58-------->HAHB4 ->ID1       ------->TEIL     --------->YAB1           --------->At5g28300<---------YAB1        ----- ------>AtSPL8      <---------YAB1                    ----------->GT1     <---------ATHB12  <------ZmHOX2a(1) ------>AtSPL3    --------->YAB1             --------->At4g35610    <---------HSFC1(1)     ----------   cttcatcgaactatgaactctcatgatatcgatgatcagttagaagcagatgtatacagtaacttgccttctcgaaatgattcttcaacagggaggagaa  15576400                                                                         <---------ICU4                                                                      --------->YAB1                                                            ---------->DOF2                                               --------->ANAC58      <---------AHL20(2)                                               --------->ANAC58----------->GT1 ---->GLK1(1)                              >>>>>>>>>TBF1  <---------ATHB12                        --- ->GT1   --------->REM1(2)          --------->MYB52(1)  --------->WOX13(1)                     <-----   atcgaaactcgtgtagatcgaaacactcagagactgagcaacgaagaagaagcaaaatcaatgaaaggtaaataataagtgttcaaagtttgaattttta  15576500                                                          <-------TEIL                                                         --------->CCA1(2)                                                        <---------ARR14(2)                                                   <---------MYB46(3)                                                   <------MYB46(1)                                                   <------MYB83                                                  --------->MYB111(1)                                                  <---------MYB46(3)                                                  --------->MYB55(2)                                                  --------->MYB46(2)                                                  <---------DEAR3(1)                                                  <---------AtMYB61       --------->HSFB2a(2)                        --------->MYB111(2)       <---------------AGL15                    <-------GAMYB       --------------->AGL15                    <---------ANAC58       <---------HSFB2a(2)                      <---------ANAC58      <-----------------AGL1                   --------->ATHB12      ----------------->AGL2                   <---------MYB46(3)      ----------------->AGL1                   <------MYB46(1)      <-----------------AGL3               <---------MYB46(3)      ----------------->AG    <---------ANAC55(2)<--------P      <-----------------AGL2  <---------ANAC58 <------MYB83 <---------ARR14(2)           <---------ANAC46 --------->MYB55(2) <---------GLK1(2)            --------->ANAC55(2)<---------MYB55(1) --------->ARR11(3)    ---------->DOF2    <---------WOX13(1)   --------->GLK1(1)              ------- <---------ARR11(3)  --------->ANAC58     <---------YAB1--------->ARR14(2)              --------->TOE2(3) --------->ARR14(2)  --------->ANAC58  <---------YAB1 <---------MYB46(3)               --------->ANAC46 ------>YAB1  ----------->GT1 ----------->GT1  --------->MYB52(2)                    <-----------GT1< ------GT1---------->DOF2     <---------ANAC58<---------AtMYB61<---------GLK1(1)  <---------YAB1-----   tcagattttctaaaaagggtaacaagaaagtttcgtaatttgtgattgttggttggtggatacagatttcagagtttaatggatattatacctcagaatc  15576600                              <-----------RAV1(1)  --------->YAB1            <---------ANAC58                                                      <-- --------->ICU4             <---------ANAC58                                                <-------- -->GLK1(2)              <----------DOF2 ----------->GT1                                  --------->YAB1 ---------KAN4(2) --------->DAG2       <--------P<---------AHL20(2)   ------->MYC3  --------->YAB1<-- ---->YAB1       ---------->DOF2     <---------MYB46(3)               <-------MYC3--------->GLK1(2)<-   agaatgatcagaaacgagataaagcttctttcttgttggaggttagtaaaatttatagttttgaacagaacatgtgtttcagagaatcagaatgatgttt  15576700  Previous    Next  AGI:  At5g38850.1    Description:  disease resistance protein (TIR-NBS-LRR class), putative. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G16870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G58120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64662.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain AAA+ ATPase, cor Range:  from: 15572386    to: 15575962    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g38860.1    Description:  BIM3 (BES1-INTERACTING MYC-LIKE PROTEIN 3); DNA binding / transcription factor. Identical to Putative transcription factor BIM3 (BIM3) [Arabidopsis Thaliana] (GB:Q9FMB6); similar to BIM2 (BES1-INTERACTING MYC-LIKE PROTEIN 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69010.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABN09046.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 15576186    to: 15578356    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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