Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <-----------GT1                                                                   ----------->GT1                                  <---------ANAC58           ------>NtERF2                                  <---------ANAC58          --------->LBD16                                --------->ARR11(3)         <---------ANAC58                   --------->ANAC58                        <---------ANAC58                   --------->ANAC58                        <---------ANAC46--------->YAB1       -----                   --------->ANAC46           --------->TOE2(3)  ---------->DOF2                -----           ----------->GT1      <---------ARR11(3)        <---------LBD16 <---------YAB1        <----   atgttcaatacagttgtgaataagccatattcaataccttgtcatcaacatcagtgaaattgcggacaaaagtaacatcataatccaaatgcttcaagta  15565000                                                 --------->AtLEC2                                                 --------->ANAC58               <---------ALFIN1                                                 --------->ANAC58               ------->GAMYB                                              -------->P                        --------->AtMYB61                                              ------>MYB46(1)                  --------->MYB46(3)                                              ------>MYB83                    ------>MYB46(1)                                            ------->GAMYB                     -------->P       <---------------AGL15               <---------MYB55(2)                 ------>MYB83       --------------->AGL15               --------->MYB46(3)         ------>ZmHOX2a(2) ---->ARR14(2)                           --------->MYB52(1)          <------ZmHOX2a(2) ---->GLK1(2) --------->ANAC58      --------->DAG2                  --------->ARR14(2)           ---- -----ARR14(2)--------->ANAC58     ---------->DOF2                  <---------ARR14(2)          <----   tctgcataaccagtagaagcaaaattcaaactatagaaaaagctaaccaacatgcaaaacttcaaattgagatcgggtccaaccacatcgatctaataga  15565100                                                                                  <---------AtLEC2                                                                                 <---------ZAT2                                                                              <------NtERF2                                                                             ------>NtERF2                                                                            <---------ANAC46                                                                           --------->ATERF1(1)                                                                           --------->RAP2.3(1)                                                                           <------NtERF2                                                                          <---------ERF1                                                                          <---------RAP2.6(1)                                                                          <---------DEAR4(2)                                                                          <---------RRTF1(1)                                                                          ------>NtERF2   <---------ARR14(2)                                                                          <---------ATERF1(1)                                                                          <---------RAP2.3(1)                                                                          <---------ORA47(2)                                                                          <---------DEAR3(2)                                                                         <---------RRTF1(2)                                                                         <---------RAP2.3(3)                                                                         <---------RRTF1(3)                                                                         <---------RAP2.3(2)                                                                         <---------DEAR3(1)                      <---------YAB1                                     --------->DEAR3(1)                   --------->AHL20(2)                                   <---------ABI4(1) --------->ARR14(2)             --------->TOE1(3)    >>>>>>>>>TBF1                         <---------------------WRI1 ----->GLK1(2)     <---------AHL20(2)                               --------->MYB52(1)   <---------RAP2.6(3) -----GLK1(2)--------->TOE2(3)<------ZmHOX2a(1)     ---------->DOF2<---------ARR14(2)  <---------ANAC46   ttctattcaacaaaaccctaatttatcagagaggaagaagaagagagagacctgtaaagaacatcgaaggaaacggcggcgcgagcatggccgatatggc  15565200                                                                              --------->TGA2(2)                                                                             <-----------TGA1                                                                            --------->bZIP60(1)                                                                            <---------ANAC58                                                                            --------->ANAC55(2)                                                                            <---------ANAC58                        <---------ANAC46                                    <---------bZIP60(1)               --------->bZIP60(1)                                          <---------ANAC46               <---------bZIP60(1)                 <---------WOX13(1)       <---------ANAC55(2)           --------->At5g28300                   --------->ATHB12        <---------MYB52(1)          ----------->GT1                    <------ZmHOX2a(1)         <-----------RAV1(1)        <---------------------WRI1        <-----------RAV1(2)      <----------DOF2     <---------ANAC46   --------->YAB1 ----------->RAV1(1)     <---------LBD16 --------->YAB1<-------GAMYB  <---------REM1(1)   tgaaatcgtaagcggtgataccacagacgtataatccgattttgccaggagtgattggaatcaaaacttctttctgttgcgtcatcgtgttgtagagctt  15565300                     --------->ARR14(2)                     <---------ARR11(3)              <---------------------WRI1                     <---------ARR11(1)            --------->ANAC46                     --------->ARR11(3)          <---------ALFIN1                     <---------ARR14(2)         <---------ZAT14                    <---------CCA1(2)           <---------REM1(2)                ------>NtERF2                   --------->ZAT14               --------->DEAR3(1)        <---------ALFIN1             ------>NtERF2               --------->AtMYB61             <---------ATERF1(1)       ----------->RAV1(1)                      <----------DOF2            --------->DEAR3(1)        --------->AtMYB61                         <---------DAG2            --------->ANAC46          <---------ALFIN1                     <-----------GT1           <---------LBD16            --------->ANAC46               <----------ID1   --------->TOE2(3)         <-----------GT1             --------->MYB46(3)              ----------->GT1<-----------GT1   caattccattttctccgcctccatatctctcacaatctcaccaccacaactacacggcgaagttaacaaaaacgaaaaaacccttttttcttaattgttt  15565400                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                              <------NtERF2                                                                                             <-------                             <----------DOF2                                                 <-------                          <-----------GT1                 <---------ARR11(3)                <--------                        <----------DOF2                   --------->ARR11(3)                ---------                        <---------DAG2         <---------ANAC58                            --------->ATERF1(1)                  <---------MYB46(3)           <---------ANAC58      <---------AHL20(2)   --------->ARR14(2)                *TSS <-----------GT1           <---------ANAC46   --------->YAB1          <---------ARR14(2)          ----------->HVH21  <---------DAG2 <----------DOF2  ------------>CBF             <----------   ttggtaacttatgcgacctgttgttactttacttttcaacagttctctttcgtgtttgaagatttcaatattaaaacgggcctaagtctgagggtcggcc  15565500      <---------At5g28300  --------->WOX13(1) <---------------AGL15 --------------->AGL15 -------->MYB46(3) ---------------->AGL3 -----------------AGL3 ---------------->AGL2 -----------------AGL1 ----------->CBF ---------------->AGL1 ---------ATHB12 ------>P ---->MYB83                 <------NtERF2 ---->MYB46(1)            <---------ANAC46 ------->ANAC58           <---------ANAC58 ------->ANAC58           <---------ANAC58 --ATERF1(1)    --------->At4g35610                                                         <-------- --DEAR3(2)     <---------At4g35610                        ----------->GT1       --------->ARR11(3) -DEAR3(1)    <-----------RAV1(2)                        <---------LBD16       <---------YAB1      -- >ETT(1) <---------MYB52(1)--------->LBD16             --------->KAN4(2)       <---------TOE2(3)  <-- -HVH21<---------TOE2(3) <---------LBD16      <---------GLK1(1)     <---------TOE2(3)      ----------   caaccaattacggtagccagatgaattggcggggttttgtcgatgtggaattcgggttattcggataatttaggtgttattaagatttgtttttaaagat  15565600                                                                                              <------                                                                                              <------                                               ----------->GT1                               <------- -TOE2(3)                                   ------>MYB46(1)           <-----------GT1        -------- --------->GT1                              ------>MYB83          <---------TOE2(3)        <---------TOE2(3) -------TOE2(3)                        <-----------GT1        --------->YAB1       <---------TOE1(2) >DOF2                             --------->WOX13(1)         --------->TOE2(3)<---------------AtSPL3   gaggttaatacagtttcaaactttcaatgtaatagttcaattaaccaaatagaaaaatatacaaacttaatgtaacaaaacgtagtacgttttgagattt  15565700       --------->ANAC58       --------->ANAC58     <---------DOF5.7(2)     --------->MYB52(1)  --------->At4g35610          --------->AHL20(2)  <---------At4g35610          <---------AHL20(2)                                                   - <---------TOE1(3)             --------->YAB1                                             --------->AHL20(2) ---CCA1(1)                 --------->YAB1                                                <---------AHL20(2) ---RVE1(1)                --------->AHL20(2)                                            <---------AHL20(2) --ARR11(3)                <---------AHL20(2)                             <---------CCA1(2)   ------- ->ARR11(3)               --------->AHL20(2)              <---------AHL20(2)          --------->AHL20(1)   tttaagctaacgcattagatgtttagaaattaataatatgtgtatacaatagttgtggaattaatctctcaatttcaaatctcttacatatattaattgt  15565800                                        --------->ANAC46      ------>ZmHOX2a(1)                                  --------->YAB1             --------------->AGL15           ---------->DOF2       <---------YAB1              <---------------AGL15     <---------AHL20(2)       <---------YAB1          <---------ICU4               ----------------->AG   ----------->GT1      <---------AHL20(2)      --------->ICU4          <---------bZIP60(1) --------->AHL20(1)    <---------AHL20(2) <---------YAB1   --------->ANAC58--------->DOF5.7(2)    <-----------GT1  ----- --------->AHL20(1)--------->TOE1(3)    --------->ANAC58<---------MYB52(1)<---------AHL20(2)  <------ -------->YAB1     --------->TOE2(3)<---------YAB1    --------->bZIP60(1) --------->AHL20(2)  ------- -->YAB1 <---------AHL20(2)  --------->ANAC55(2)   ----------->TGA1<------ZmHOX2a(1)   --------->AHL20(2)   aaacatattattttaaagaaaccttattcttacttattataaacgaaattgtcatgacgttatcctataggagaaattttttaactagtttaaataacta  15565900  Previous    Next  AGI:  At5g38830.1    Description:  tRNA synthetase class I (C) family protein. similar to tRNA synthetase class I (C) family protein [Arabidopsis thaliana] (TAIR:AT3G56300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42791.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia, N-terminal; (InterPro:IPR015803); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia, C-t Range:  from: 15562799    to: 15565416    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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