Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------YAB1                                                   <---------AHL20(2)                                                 <---------ICU4                             <--------                                              <---------ICU4                                ---------         ----------->GT1                      <---------AHL20(2)                   ----------->GT1<--       ---------->DOF2                   --------->AHL20(2)          --------->AHL20(1)     ---------   ------------------------>ANAC81     ----------->GT1<---------YAB1 <---------AHL20(2)     <-------- ------->TEIL                        ---------->DOF2 <---------AHL20(2)           --------->DAG2  <-- ---->CCA1(2)                        --------->ZAT14 <---------AHL20(1)          ---------->DOF2  <-- ----ARR11(3)                    --------->ZAT6 --------->ICU4       --------->AHL20(2)    <---------AHL20(2) --->AHL20(1)              <-----------GT1   --------->AHL20(2)      <---------AHL20(1)    --------->AHL20(2)   atgaaactgaaaagaaaaaaaaaacatttttactcacagtaaagttaataaatattatttttaaaacacaataaaatgttggaaaaagtcaaaataaatt  15560300                              --------->At4g35610                            ---------->CDC5                          <----------DOF2                         <---------ANAC58                  <---------ICU4      ------->GAMYB                  <---------AHL20(2) <---------MYB55(2)                  --------->ATHB51   --------->MYB46(3)         <-------TEIL    <---------ANAC58                                         ------>MYB83 -AHL20(2)        --------->AHL20(2) <---------MYB111(2)                          ------>MYB46(1) >AHL20(2)        <--------ATHB1     <---------MYB52(2)                         --------->DEAR3(1) -------ANAC58   --------->ICU4    ------>NtERF2          <-----------GT1      <---------At4g35610 >AHL20(1)     --------->YAB1 <---------At4g35610    --------->YAB1            --------->At4g35610 -AHL20(1)   --------->AHL20(2)    ----------->RAV1(1)   <-----------GT1     <-----------GT1 -------ANAC58<---------AHL20(2)  --------->DEAR3(1)<---------YAB1     <----------DOF2           <--- -------ANAC46--------->AHL20(2)------>NtERF2---------->DOF2       ------>ZmHOX2a(1)        <--------   tcgtttgaatgtgcatttaataatttggcttcagcgccaacaaacacaaaagctataattttccctctccttcctttcttcacctcccattctctgcttc  15560400                                                                                              ------>ZmHOX2a(1)                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                                          <---------ARR11(3)                             <------ZmHOX2a(2)                                            <---------GLK1(2)                           --------->GLK1(1)                                              --------->ARR14(2)                      <---------At4g35610                                                 <---------ARR14(2)                      --------->LBD16                                                     --------->ARR11(3)                      --------->At4g35610                                                 --------->AGP1 -------DOF2        <---------LBD16     <---------CCA1(2)    <------------CBF       <---------YAB1 -At4g35610    <----------DOF2   <---------GLK1(1) --------->YAB1                  <-----------TBP   tttcttcaactaaaattctttttccgcagagatcgatttctcaaatctctgtatcatcttctccattgtttagaaaaactagggttcttatagatcctct  15560500                                                      --------->At4g35610                                                     <---------ARR11(3)                                              --------->ANAC46                                          <------ZmHOX2a(2)                                          --------->CCA1(2)                                         --------->AGP1                                         <---------ARR11(3)                                         --------->ARR11(3)                                         --------->ARR14(2)                        <---------DDF1   <---------ARR14(2)                       <---------ETT(2) --------->GLK1(1)                      ------------>CBF                       --------->ETT(2)----------->ARR10              --------->ANAC58             <-             <---------CCA1(2) --------->At4g35610----------->RAV1(1) --------->ANAC58<-----------GT1   tctctctcgtccctcaaatctctcgtcgacatcatcttacgaagatccacaacaacatctgaagaaaatcgcaagaaaacatccaatttcacaaactcta  15560600                                                                                                   <-                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                         <---------YAB1                                                                                      --------->GLK1(2)                                                                                     <---------GLK1(2)                                                                                     --------->ARR14(2)           <<<<<<<<<TBF1                 --------->WOX13(1)              ------->TEIL<---------ARR11(3)      --------->GLK1(1)       ------------>CBF                          <---------CCA1(2)------------ --------GLK1(1) <----------DOF2       ------------>CBF            <---------ARR11(3)<---------ARR14(2)   ggtttccgatttcttcttccttttctctaatcttcaatttgatcaatccgttgcaaaatcgaacttcaacatctgtatctaatccaagattctcaatgat  15560700                             <---------SPL7    ------------>CBF         <---------SPL1(2)    <------ZmHOX2a(2)       --------->ANAC55(2)                             --------->At4g35610   <---------ARR11(3)       <---------ANAC58               <---------MYB46(3)  <------ZmHOX2a(1)         <---------ANAC58 <---------ARR11(1)           <---------ICU4 --------LBD16              <---------ANAC55(2)           <---------MYB52(1)<---------YAB1 ---ICU4                   <---------------AtSPL3   <---------ZAT14       --------->YAB1 -->ATHB12                 --------------->AtSPL3   <---------At4g35610  <---------YAB1 --ATHB1                --------->GLK1(1)    ------->TEIL<-------GAMYB <---------ICU4          <----- -->YAB1                <---------GLK1(1)    --------->ARR14(2)        --------->YAB1         ------- ->ICU4       --------->ARR14(2)             <-----------ARR10      --------->YAB1          <------ZmHOX2a(1) --ATHB12     --------->GLK1(2)--------->SPL7<---------ARR14(2)   --------->ANAC58      ------->GAMYB >CBF         <---------ARR14(2)            <---------ARR14(1)    --------->ANAC58   --------->MYB52(1)   ttcaggatcaatggagaatctagatgaaatccgtaccgatattgtcgaatctactgctccgttgttgcaagaatcatcatcagagagcaacggaggagga  15560800               <---------MYB52(1)             <---------ANAC46                                                             --------->ARR14(2)         <---------HSFC1(2)                                                               <---------ARR11(3)         <---------HSFB2a(1)                             --------->ZAT2                   <---------ARR14(3)         <---------At4g35610                             <---------At4g35610              --------->ARR11(3)         --------->At4g35610                             <---------ZAT2                   <---------GLK1(2)         --------->HSFC1(2)                              --------->At4g35610              --------->ARR14(3)         --------->HSFB2a(1)                            <---------ARR14(2)                <---------ARR14(2)         --------->ZAT2                             --------->At4g35610    <---------ANAC58   =======      ------->GAMYB <-----------RAV1(1)          <------ZmHOX2a(2)         <---------ANAC58 ------>ZmHOX2a(2)     --------->ANAC46                          --------->YAB1              <---------ANAC46<------ZmHOX2a(2)   --------->MYB52(1)    <---------RAP2.6(2)   ------->GAMYB     --------->YAB1         ----------->ARR10 -ZmHOX2a(1)<-------TEIL<---------ZAT18       --------->MYB46(3)<---------YAB1 ----------->HVH21 ---->GT1<---------ZAT2<---------ANAC46    --------->REM1(1)----------->GT1----------->RAV1(2)------>ZmHOX2a(1)   gaattcaacggagcttcgtttagtggtgcggttttcaatctcgctacaacgatcatcggagctggtatcatggcattgcctgcgacgatgaagatcctcg  15560900                                                                                                   <-                   --------->YAB1                                                                 ---                  <------ZmHOX2a(2)                                                              <---                 <---------ARR11(3)                                       ----------->GT1       -----             --------->YAB1                    --------->HSFC1(2)   <---------TOE2(2)          <-----          --------->ARR14(2)                   --------->HSFB2a(1)  <---------TOE1(2)         <------        --------->LBD16                        <---------HSFB2a(1)  <---------TOE2(3)         -------       --------->ANAC46                        <---------HSFC1(2)   <---------TOE1(3)         <------       <---------HSFB2a(2)                --------->MYB46(3)     <---------ANAC46             -------       --------->LBD16                  --------->MYB52(1)       <---------ANAC58             <------       --------->HSFB2a(2)        <----------DOF2                <---------ANAC58             -------      <---------LBD16            <---------ANAC58            <---------ANAC58                 <------      <---------HSFB2a(2)        <---------ANAC58            <---------ANAC58                 <------ ========================HOX2a_HOX2a --------->TOE2(3)     --------->ARR11(3)             ---------->DOF2   gtcttattcccggaatcacgatcatcgttctcatggctttcttaaccgatgcttcgattgagttcttgcttaggtttagtaacattgggaatcaaagatc  15561000      <---------ZAT6   <---------AtMYB61   --------->ALFIN1   <---------DEAR3(1) --------At5g28300 ------>MYB52(1) ------SPL7 ->ZmHOX2a(2) -ZmHOX2a(2) ---ARR14(2) -->ARR11(3)                                                                                       -- ---ARR11(3)                                                                                       <- -->ARR14(2)                                                            --------->ATHB12          <-- ---AGP1   <---------YAB1                                             ----------->RAV1(1)        ---- -->ARR14(3)                                <-----------RAV1(1)       <<<<<<<<<<<<<<<<<LFY      ----- -----ARR10<---------TOE2(3)           <------ZmHOX2a(1)         <---------MYB52(1)    ------>ZmHOX2a(2) ---ARR14(3)         <----------DOF2  --------->ICU4      <---------GLK1(2)        <---------YAB1<---   ttacggtggtgttatggatgattcttttggtaaatgtggaaggattatgttgcaagtttcgattctcgttagcaacattggtgttttgatcgtttatatg  15561100  <---------ICU4  --------->ATHB12 --------->ICU4 <---------YAB1 ------->YAB1                                   <---------AGP1 --------ICU4                             <<<<<<<<<RAP2.2 -------YAB1             <----------DOF2 <---------TOE2(3)                         <------MYB46(1) ----->ARR11(3) <----------DOF2   --------->MYB59 ------>ZmHOX2a(2)<-----------GT1 <------MYB83 ---->YAB1    <---------YAB1      <---------TOE1(3)        <------MYB83           --------->MYB46(2) ------ARR11(3) --------->TOE2(3) <---------TOE2(3)        <------MYB46(1)        --------->MYB59   atcatcattggtacttatctttaacttctttgggtttaggttttagattggatctaatatttggttttataactctgtttttgtttggtattttgaaggt  15561200  Previous    Next  AGI:  At5g38820.1    Description:  amino acid transporter family protein. similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G30390.1); similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G30390.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49239.1); contains InterPro domain Amino acid transporter, transmembrane (InterPro:IPR013057) Range:  from: 15560711    to: 15562412    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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