Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->ANAC58                                                        --------->ANAC58          ---------->DOF2                            <---------YAB1             ------->TEIL         <---------ARR11(3)                        --------->ARR11(3)          --------->ANAC58        --------->ARR11(3)                       --------->ATHB12             --------->ANAC58       --------->YAB1 ---->DOF2           <---------WOX13(1)     <----------DOF2             ------>ZmHOX2a(1)   agaagattatacaaaaacatgtgaatgattttgataaaaacacaaactttagagacgcacttaacaagttagtcctaagataatcaaagaagctatttgg  15437400                                             --------->ANAC58                                             --------->ANAC58                                    --------->CCA1(2)         --------->ANAC55(2)                                    --------->ARR14(1)      --------->AHL20(2)                            --------->MYB52(1)  ---------->DOF2                            ----------                       <----------ID1<-------TEIL--------->DAG2                         ------>MYB83                    ---------->DOF2--------->ARR11(1)   --------->AHL20(2)              ------>MYB46(1)             --------->MYB46(3)    --------->ARR14(2)  --------->AHL20(2)  <---------TOE2(3)   ------           <-----------GT1--------->MYB46(3) --------->ANAC46 <---------ANAC55(2)     <---------MYB59  <-----------GT1------->GAMYB     <---------ARR14(2)<----------DOF2 <---------YAB1<-----------GT1   gattaaacccatttcacaaccgaaaagaacaaacagagatacgattcacgaaaagctttaaattaagtaatctcattgaggcatttaaccaaacaacaaa  15437500                                                                                       <---------ANAC58                                                                                       --------->ANAC55(2)                                                                                       <---------ANAC58                                                                                       <---------ANAC55(1)                                                                                       <---------ANAC46    --------->MYB52(1)  --------->MYB52(1)        <----------DOF2             <---------ALFIN1 ->RAV1(1)             <---------ATHB12     <-----------GT1                  ------>ZmHOX2a(1) <----- ---->DOF2       --------->GLK1(2)    --------->YAB1                ---------->ID1 <---------MYB52(1)   agggcataacgttttcaagaatccaataacgaaacgagtatcaaaatcacttctttgaagtgagacatttgtcttcttcctcaccgtttgcgtgagactt  15437600                                                                      <---------ARR11(3)                 --------->CCA1(2)                                    --------->ARR11(3)            <---------ZAT14                                  ----------->GT1            <-------TEIL                                    --------->DAG2   --------->TOE2(3)      -    <-----------GT1                       >>>>>>>>>TBF1    ---------->DOF2<-----------GT1         --- -----DOF2  --------->ZAT14 <-----------------AG--------->YAB1      ----------->ARR10       ---------   ttcaatttacgaagtacagagacgagtatcaacacaattgggaagaagaattagaatttgagaaagtgataagattttacctttgaacgaagaaacctga  15437700                                                                                    <---------YAB1                                 <------ZmHOX2a(1)                                  <---------ANAC55(1)                             <---------ANAC58                                       <---------ANAC55(2)                             <---------ANAC58                                       <---------ANAC58                             <---------ANAC46                                       <---------ANAC58                          <--------P                                                <---------ANAC46                         <-------GAMYB                                            <-----------GT1                        <---------MYB46(3)                                     <---------ICU4                   --------->CCA1(2)                                     ----------->GT1                  <---------ARR14(2)   <------ZmHOX2a(1)               <---------ANAC58         <---------YAB1<---------TOE2(3)   --------->DAG2              <---------ANAC58 ----->ZmHOX2a(1) --------->ARR11(3)  <----------ID1                   <---------ANAC46 --->ZmHOX2a(2)   <---------ARR11(3)  ----------->GT1               ----------->HVH21      <------ZmHOX2a(1) -->RAV1(2)       --------->ARR14(2) --------->MYB59      --------->MYB52(1)  --------->ICU4   tcctaatcttgaagattgaagatttgtggttgcgaggattaggaaaaattggagttcgaataacgaagcagtgacttgtgaaaattacgtttaggaacag  15437800                                    *TSS                         <------------CBF                            <---------AHL20(2)                 --------->AHL20(1)             -------                           <---------AHL20(2)                  <---------AHL20(1)             <------              <------ZmHOX2a(1) <---------AHL20(2)             --------->AHL20(2)         <---------RVE1(1)            <---------TOE2(3)  --------->AHL20(2)              <---------AHL20(2)         <---------CCA1(1)      <----------ID1  <---------ARR11(3)                   <---------CCA1(1)             --------->ARR11(3)   --------->DAG2     --------->AHL20(1)                   <---------RVE1(1)             <---------ARR11(3)  ---------->DOF2     <---------AHL20(1)          <---------ANAC46<---------YAB1---------->DOF2  <---   aacataaagcgactaaggaaacaatattttttatttaatggttcaaatttcgtcgtgttggatattttattgttgacaaaacaaaagaagagatatttta  15437900                                                                                                   <-                                                    <----------DOF2                              <---                                                   <---------ANAC58                             <----                                                   <---------ANAC58                             -----                                            <---------AHL20(1)                                  -----                                            --------->AHL20(2)                                  <----     <---------ICU4                         <---------AHL20(2)                        <---------DAG2 -->AHL20(2)                         <-----------GT1<---------DAG2                    <----------DOF2 ---AHL20(2)                        --------->WRKY38(1)   <----------DOF2            <---------ANAC58 ------YAB1                       <------------CBF<------------------------ANAC81    <---------ANAC58   ttcttgaacattactgactcacaagtacaactcaagaattgaccattttatttgctttttcttttctgtttttgatcaaattggtttgctttttctaatt  15438000                                                                                       xxxxxxxxxxxxxx                                                                             --------->MYB52(2)                                                                             --------->MYB55(2)                                                                             <---------MYB46(3)                                                                             --------->MYB111(2)                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                           <-------GAMYB                                                                       --------->ARR14(1)                                                                       --------->CCA1(2)                                                                      --------->ARR11(1)                                                                      <---------ARR14(2)                                                                   <---------ANAC46  <---------ANAC58                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           ------->TEIL                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------YAB1                                            --------->At4g35610<---------ANAC46      <---------At4g35610                                         <------NtERF2 <-----------RAV1(1)      --------->At4g35610                                     --------->ANAC46  <---------REM1(1)     <---------YAB1                       --------->MYB52(1)  --------->ANAC58  <---------MYB46(3) --------TOE2(3)               <---------AHL20(2)             --------->ANAC58<-------GAMYB     <---- ------AHL20(2)             --------->ARR11(3)        ----------->GT1 --------->ARR14(2)        <---- -----AHL20(1)              --------->AHL20(1)    <---------WRKY18(1) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->AHL20(2)              <---------AHL20(1)   ----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---->AHL20(1)             <---------AHL20(2)  <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----AHL20(2)<---------YAB1<---------ARR11(3) <---------ANAC58   <---------At4g35610<---------ANAC58   taatgttctgatgaatatgaatagcataaatatttttttttgactaagggcttgactcgtttaaacgcagcggatacggttgttgttgcgagagtttgct  15438100                                                                                            <--------                                                                                           --------->HSFB2a(1)                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                      --------->SPL7               <---------AHL20(2)     <---------AHL20(1)                          <---------------AtSPL3               --------->AHL20(2)     --------->AHL20(1)                          <---------------AtSPL8           --------->AHL20(2)         --------->AHL20(2)                       <---------YAB1 xxxxxxxxx>smallRNA(le3)              <---------ARR11(3)                   --------->YAB1 ------->TEIL -----DAG2--------->AHL20(2)--------->ARR14(2)                   ----------->RAV1(1)<---------SPL7 ------DOF2<---------AHL20(2)   -------->P              <---------YAB1     --------->AHL20(2)<-------   ttatccctgtgatttaatttataaacttcaaatctaccaatattttagtatgcaaaatgttattgtgcaacatacaataatatgatggtacgaacctttt  15438200                                             <---------TOE1(1)                                            --------->SPL7                                          <---------SPL7                                         <------MYB46(1)                                         <------MYB83                                      <------ZmHOX2a(1)                           --------->AHL20(2)                                    <---------TOE2(3)                             <---------AHL20(2)                              <---------AHL20(2)                        <---------YAB1                              <---------AHL20(1)                      <-----------GT1          <-----   --------->ALFIN1           --------->AHL20(1)                 <---------ANAC55(2)          ------- -DAG2                        --------->AHL20(2)                 --------->ANAC55(2)  <---------AHL20(2) ---DOF2----------->GT1   --------->ZAT6<---------------AtSPL8 --------->AHL20(2) --------->AHL20(1)   gggaagtggatggaaaaaatacagactaacaataaatttaggatggtacgaagttgtatgctcaattacatattactagtgaaattttttaatctatatt  15438300  Previous    Next  AGI:  At5g38510.1    Description:  rhomboid family protein. similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT1G12750.1); similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT1G12750.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO49299.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 15434963    to: 15437836    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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