Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->TGA2(2)                                                           <-----------TGA1                                                           <-----------HVH21                                                          <---------bZIP60(1)                                                          --------->O2                                                          --------->ANAC46                                                          --------->TGA1a                         --------->LBD16     ------>ZmHOX2a(1)                       <---------LBD16 --------->At4g35610<---------TGA1a   <------MYB83                   <-----------RAV1(1) <---------At4g35610--------->bZIP60(2)                   <---------MYB46(3)<---------WRKY38(1)  --------->bZIP60(1)                   --------->MYB52(2)<---------WRKY45     <---------O2      <------MYB46(1)                 <---------MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ----------->GT1        --------->ANAC58<---------ANAC46    --------------------->WRI1<-----------RAV1(2)        --------->ANAC58<---------ANAC58    --------->TOE2(3)       <-----------HVH21        --------->ANAC46<---------ANAC58    --------->TOE1(3)     --------->MYB59     <---------GLK1(2)   aattcaacacaaggaatccatttgttgcggagaaggtagtcaacttccttagccaattcgacgtcagtaaggtcagggaggtaagatagagtctcaaact  15402100                   <---------ALFIN1               <------NtERF2             <---------RAP2.6(2)           <------MYB46(1)                         --------->ANAC55(2)         ----------->HVH21           <------MYB83  <---------ATHB12    <---------YAB1                   ------->MYC3          <---------MYB46(3)               <---------ICU4             <---------ICU4          <---------AtMYB61                --------->YAB1            --------->ICU4                 <          --------->MYB55(2)               -------->ATHB1        --------->ZAT18                  <--        <---------MYB52(1)                --------->ICU4      --------->At4g35610                ----      <---------YAB1     <---------YAB1   <---------ATHB51    <---------At4g35610   ---------->DOF2 -  <----------DOF2<---------ALFIN1         <---------ATHB12    <-------GAMYB   <-------MYC3     <-----   tcttctttccgattggtggccacacctataattcccaattcccaattattcttaagtattgttcagttgcactaattgcacatgacaaaagacagttttc  15402200                                                                               <---------LBD16                                                                            --------->WRKY38(1)                                                                            ----------->HVH21                                                                           <-----------HVH21                                                                         --------->LBD16                         --------->ZAT6                                  <---------MYB46(3)                     <---------MYB52(2)                                 <---------ANAC58                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <---------ANAC46                    --------->At4g35610     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->LBD16                    <---------At4g35610     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------WRKY18(1)           --------->TOE2(3)               <---------YAB1              <---------LBD16 ---------ICU4      --------->ZAT2     <---------ANAC58             <---------ANAC58 -------YAB1       ------->TEIL        <---------ANAC46             <---------ANAC58---------->DOF2 ----->TOE2(3)  --------->AtLEC2       <---------ANAC58      <---------MYB46(3)<---------ANAC46 -------->YAB1 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <-----------RAV1(1)<---------LBD16    <x ----YAB1  --------->TOE1(3)      <---------ALFIN1         <-------GAMYB<---------ANAC58     --------   attaatgacattaccttcatgcagctaactcttcccccattgcttgtgatggaagtaatgtcgttgttggccttgcgggtgaccgggaaagaagcggatg  15402300                                           <------MYB83                                           <------MYB46(1)                                         <--------P                                       <------NtERF2       <------NtERF2                                      <---------LBD16      <---------At4g35610                                      --------->LBD16    <-----------RAV1(2)                                     <---------LBD16    <------NtERF2                                     <---------ANAC46   --------->At4g35610                                    --------->ATERF1(1)----------->RAV1(1)                              <---------ANAC46       --------->At4g35610                              <---------ANAC58   --------->AtMYB61          --------->ANAC58                              <---------ANAC58   ------->GAMYB<------ZmHOX2a(1)          <<<<<<<<<TBF1                             <------NtERF2 ----------->GT1 --------->At4g35610   <---------MYB52(1) < xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------LBD16  <---------At4g35610    --------->ANAC58   <<<<<< ->At4g35610               <---------RAP2.6(2)  --------->MYB46(3)        <------ZmHOX2a(1) <<<<<<<<<TBF1   acttcaaaccagtgaatggagcgaccatggtggcttgagccggggaggtaaccacagcggcagaggagagcatagaggaagccattacttcttcttcttc  15402400                                                                                   <---------ARR14(2)                                                                             *TSS  --------->ARR14(2)                                                                            <---------YAB1      <----                                     --------->AHL20(2)                   --------->YAB1        -----                                   --------------->AGL15                  -------->HAHB4       <-----                                   <---------------AGL15                 <---------ATHB12   <-------TEIL      <----------DOF2              <----------DOF2                    --------->ICU4  <---------LBD16     <---------ANAC58             <-----------------AGL3        --------->DAG2     <-----------HVH21     <---------ANAC58             <---------ICU4               ---------->DOF2---------->DOF2-------- ----------DOF2                  --------->ICU4           ----------->GT1--------->ICU4--------->LBD16 <<<TBF1                      ---------->ID1      <-----------------------TaNAC69(2) <---------LBD16   ttcttttgcttaattgtttttctattggttttgtcatctttatatagtgagaaccgtaagaggcaaaaagccctaatgatcaaagggtccgggattcatg  15402500                            --------->DAG2                          ---------->DOF2                         <------ZmHOX2a(1)      <---------ZAT18  <---------TOE1(3)                                       <---------ANAC46      --------->ZAT18  <---------TOE2(3)            <----------DOF2        <------------CBF -----ICU4        --------->ATHB12         <---------CCA1(2)          --------->ATHB12 ---->YAB1       --------->ICU4           <---------MYB52(1)         --------->ICU4 ----YAB1        <---------YAB1          <---------DAG2 <----------DOF2   --------->ATHB12 ->YAB1      <---------ALFIN1  --------->ALFIN1 <---------CCA1(2)<------ZmHOX2a(1)                <--   ataactcgttcactaccacatgattaaggaaaggtgttgacacccttatcttatctttcttttgtgaggaaatgagtgattgtgtatggtttactagtct  15402600                                                                <---------AHL20(2)                                                               <---------AHL20(2)                                                               --------->AHL20(2)             <----------DOF2                                   --------->AHL20(1)            <---------ANAC58                             --------->At5g28300            <---------ANAC58                            ----------->GT1            <---------ANAC46                         <---------WRKY18(1)         <---------MYB52(1)  --------->HSFB2a(2)  <---------AtLEC2         <--------P   ------>ZmHOX2a(1)       <---------At4g35610       <---------MYB46(3)    <---------HSFB2a(2) <-------TEIL  <---------AHL20(1)      ------>ZmHOX2a(2)   <----------DOF2     --------->At4g35610 <---------TOE2(3)   --------->ARR11(3)      =======================HOX2a_HOX2a <---------GLK1(1)    --------->YAB1  <----------DOF2 -------ALFIN1   ---------->ID1     ---------->DOF2 ----------->HVH21  --------------->AtSPL8    ----   ccacttgatcggttgctttggctccttccttttggaagaaaagaaatcagatgcatgaccgtaaatataatgttttggaccttttatttatcttgtatgt  15402700                                      --------------->AGL15                                      <---------------AGL15                                <---------AHL20(2)                                <---------ICU4                                                  -----                               --------->AHL20(2)                  <---------YAB1               <----                           <---------MYB52(1)     <---------ARR11(3)                <-----------GT1          <------MYB46(1) <-------GAMYB           --------->ARR11(3)    --------->YAB1    <---------- --->TEIL <------MYB83   ----------->GT1      <------ZmHOX2a(1)  --------->YAB1 ------->TEIL --------   atttttaaaatttggtttacattacttcggttaataaatactataacaggaatatctataaacagagtcatgactcataatgcatttcacaatgtcaaag  15402800                                                                                 --------->ATHB12                                                                                 <---------ICU4                                                                                 -------->HAHB4                                                                                 --------->ATHB51                                                                                 <--------ATHB1                                                                                <---------YAB1                                                     --------->LBD16            --------->ICU4                                                   --------->LBD16              <---------ATHB51                                              --------->ZAT14                   --------->AHL20(2)                                         --------->LBD16                      --------->YAB1                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->AHL20(2) ------->TEIL     <---------YAB1         <---------LBD16                 --------->AHL20(2)     <---- ---->At4g35610<---------AHL20(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)       <---------AHL20(2)        <---- -----At4g35610--------->AHL20(2)--------->TOE2(3) <---------LBD16   --------->AHL20(2)  xxxxxxxxxxxx -HVH21<---------TOE2(3) --------->ZAT6<---------LBD16             --------->TOE2(3)--------->AHL20(2) -->DOF2   --------->AHL20(2)  --------->ICU4 <---------ZAT14    <---------YAB1 <---------AHL20(2)<--   ctgaacgttgagataaatttatcaatagcactaaatattaatccgcggtataccgcgggtctatattttcattaaataaaaaataattgaatatttctta  15402900                                                --------->LBD16                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             <---------At5g28300                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->AHL20(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------AHL20(1)    --------->AHL20(2) -----TOE1(2)                  <---------AHL20(2)            <---------AHL20(2)        <xxxxxxxxxxxxx -----TOE2(3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------TOE2(3) xxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           ---------->DOF2 ----ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(2)<---------TOE1(3)    <-   ggatgacttaataaatttctgctattgtttgatttaaatgtataattcaccgcgagacaaaattttataactcaaattttaaagttttaagttgtatttg  15403000  Previous    Next  AGI:  At5g38430.1    Description:  ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B). Identical to Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (RBCS-1B) [Arabidopsis Thaliana] (GB:P10796); similar to ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) [Arabidopsis thaliana] (TAIR:AT5G38420.1); similar to chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit precursor [Brassica napus] (GB:ABB51649.1); similar to Ribulose bisphosphate carboxylase small chain F1, chloroplast precursor (RuBisCO small subunit F1) (GB:P27985); contains InterPro domai Range:  from: 15401347    to: 15402477    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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