Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -----At4g35610                                                                             <-------- -----ZAT2                                                                            --------->LBD16 ---->At4g35610                                                                      <---------ANAC46 ---->ZAT2                               --------->ZAT14        ------->GAMYB <---------CCA1(2)   --- ------RAV1(1)            <-------TEIL --------->ZAT6          --------->MYB46(3)   <---------LBD16 --At4g35610 --------->YAB1            --------->ANAC46<----------DOF2      --------->YAB1  <--------   ctgcaactctctctatcaaaacagatgatacatcaagcttcactctactcacttcttctttcacaacctccaaaactctcataacttccgcatacttttc  15241800                                                                                   ------>MYB46(1)                                                                                   ------>MYB83                            --------->LBD16                                      ------->GAMYB                            ------>ZmHOX2a(1)                                    --------->DEAR3(1)                          ======================RAV                              --------->DREB2C(2)                      <----------DOF2--------->LBD16                             --------->DEAR4(1)                      ------>ZmHOX2a(1)                                       <---------ALFIN1                  <---------ARR14(2) --------------------->WRI1        --------->ZAT2                  --------->ARR14(2)----------->RAV1(1)         ---------->DOF2 --------->DEAR3(2)                  <---------ARR11(3)--------->ANAC46        --------->ZAT6   --------->MYB46(3)------ -DAG2   --------->ZAT6   ----------->RAV1(2)              <---------YAB1   ------>ZmHOX2a(1)  ------ --->ZmHOX2a(1)  <---------CCA1(2) <---------LBD16   <----------DOF2   <---------ZAT2   <----------DOF2 --DOF2  <---------ALFIN1 <---------LBD16           <---------DAG2     <---------At4g35610    <------   ctccatcttcaacacttccatatccttttcctgaaaccccgcagaacgattcgacctttttatcagtaacgcgagctcctccaccgacttctttacctcg  15241900                                                             ------->GAMYB                                                            <---------ATHB12                                                            --------->MYB46(3)                                                           ------>MYB83                                                           ------>MYB46(1)                                                           -------->P                                                          --------->MYB55(1)                                                         <---------MYB111(2)                                                         <---------MYB46(2)                                                         <---------MYB59<---------ANAC58        <----------DOF2           <---------GLK1(2)      <---------MYB111(1)                       -- --->TOE1(1)            <---------At5g28300              --------->MYB46(3)                      <--- --->TOE2(1)           <-----------GT1                <-----------GT1   <---------ANAC58    <-------- ---LBD16           <----------DOF2------->TEIL <---------YAB1       <----------DOF2        ---------   gacaatcccgcttctactctagcttttacagtctctgaatctcttctactctcattgtaccaaccaagtttctttcttgacatatgtatagcctccacaa  15242000                                                                    <------ZmHOX2a(1)                                                                  <---------TOE1(3)                                                                  <---------TOE2(3)    <----------ID1                                       ------>ZmHOX2a(1) -------->DOF2                                         ----------->RAV1(2)               <---------ARR11(3) ------MYB52(2)                                      <---------ARR14(2)    --------->WOX13(1) -ALFIN1 <---------ICU4     ---------->DOF2 --------->YAB1    <----------DOF2            --------->ARR11(3) >ANAC46--------------->AGL15        ---------->DOF2 --------->ARR14(2) --------->GLK1(2)<---------GLK1(2)   ctaaagacgactaattacagaaatttatcccaaagaaaacaaagaaacatcatcaaatcctgagctttaaggagaatcaatccaatttgaagatttttgg  15242100                                                        <-----------GT1                --------->GLK1(1)                     <---------HSFC1(2)            ----------->GT1                           <---------HSFB2a(1)       --------->MYB46(3)                             --------->HSFB2a(1)                           -     <---------DOF5.7(2)                              --------->HSFC1(2)                          ---     --------->MYB52(1)        <---------AGP1        <---------KAN4(2)                       --------  --------->TOE2(3)     ---------->DOF2          --------->ETT(1)                           ---------  --------->TOE1(3)  ----------->RAV1(1)------>ZmHOX2a(1)                    *TSS    ------------>CBF   tttaccttaacgactggtaaatccaacaaagtagaactgttcctcttcatgtcggaattttccattgctcgattcaacatttgttctaacaatgtaaagt  15242200                                                                      ------------>CBF                             ------>MYB46(1)                         <-----------GT1                             ------>MYB83                        <---------RVE1(1)   --------->AHL20(2)      <---------MYB46(2)                    <---------CCA1(1)   --------->YAB1          --------->MYB46(3)                   --------->ARR11(3) -------->WOX13(1)      <-----------GT1                         <---------GLK1(2) --------->CBF  <----------DOF2    --------->YAB1               <---------ARR11(3)        <---------YAB1 ->DAG2       <---------ATHB12 --------->MYB46(3)              <---------RVE1(1)        --------->YAB1 ->DOF2   ------------>CBF --------->AtMYB61 ---------->DOF2--------->LBD16      --------->GLK1(2)   ggcaattaaaaatccaatcttttttatcaccaaaccatcaaaacacataaagaaaacaaacccagagattttttcaatacaagaatcgaattataaatgg  15242300                                    --------->LBD16                                      <---------HSFB2a(2)               <---------MYB52(1)  ------->GAMYB                                         --------->HSFB2a(2)           --------->MYB52(1)     <---------LBD16       <---------ANAC58        <---------YAB1  -----           ------->TEIL          --------->MYB52(1)     <---------ANAC58   <---------ICU4------>ZmHOX2a(1)         <---------SPL7          -------->P  --------->ICU4               <---------YAB1 --------->LBD16      <---------DOF5.7(2)      --------->MYB46(3)     <---------YAB1    --------->YAB1  --------->TOE1(2)  --------->YAB1        ---------->DOF2      <---------YAB1            <---------YAB1   <---------LBD16   acaatagtaaacgtaccggtgagtaagaaagaaacaaccggagagtgatgatgaagatgcttgataagttgttatcatcattttgatattcctgggagaa  15242400                                                                                                    <                                                                                                   --                                                                                                  ---                            --------->AHL20(2)                                 --------->YAB1     <--                            <---------AHL20(2)                               --------->ANAC58     ---                     --------->LBD16        <------ZmHOX2a(1)                --------->ANAC58     ---                    <---------HSFB2a(2) <---------TOE2(1)             --------->YAB1           <-----                    --------->HSFB2a(2) <---------TOE1(1)             <---------ICU4           ------ ---->GLK1(2)      <---------LBD16    <------ZmHOX2a(1)            --------->YAB1      <---------GLK1(2)   tatttaagacgttttgtttcttctgggaatataaatctgaggacgaggactcaagtagtcaagtagcatgaataatggcaagaatcacagaaactcaaat  15242500                                                              <-------GAMYB                                                             <------MYB83                                                             <---------DEAR3(2)                                                             <------MYB46(1)                                                          xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       --------->ZAT14                                                       xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      <---------REM1(1)                                                      xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      <---------ANAC46                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                     xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                    <---------ANAC46       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    <------MYB83xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                   <---------DEAR3(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                *TSS<------MYB46(1)  --------->ANAC58                                                xxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              x                                                xxxxxxxxxxxxxxxxxx>smallRNA(si3)                    x                                                xxxxxxxxxxxxxxxx>smallRNA(si3)                 ------                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <-----                                                xxxxxxxxxxxxxxxxx>smallRNA(se3)               <------NtERF2                                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <------        ------------>CBF                        xxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->PCF5    <----------DOF2                 <-----------GT1--------->ALFIN1  --------->ANAC46     <---------- ---------MYB52(1)                <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxx ------->LBD16                 <---------ATHB51 xxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxx ------>ANAC46                 --------->AHL20(2)  <---------AtMYB61 --------->ANAC58  xxxxxxxxxxxxxx -------ANAC55(2)              --------->ICU4   xxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx ------>ANAC55(2)     <---------GLK1(2)         xxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxx -------->GT1 <---------AHL20(2)-------->ATHB1  xxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ALFIN1 xxxx ----ARR14(2) ----------->TBP  <---------AHL20(2)xxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(s) --->ARR14(2) --------->AHL20(2)<---------ICU4  xxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC46xxx   ccgtaactttggcaatataaataagcttctcaaattattaacaaatcgtctgggtggtgtagtcggttatcacgctagtctcacacactagaggtccccg  15242600        ------>NtERF2      <---------LBD16     <---------LBD16     xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(s)                                                                     ---- --->LBD16                                                                                       <--- ----TOE1(2)                                                       <-----------------AGL1      ------ ---LBD16                                                        <---------At4g35610          <------ -HVH21--------->LBD16        <---------------AGL15        ---------->DOF2              <-----------GT1 xx>smallRNA(si3)             <----------DOF2            --------->DOF5.7(2)       <---------AHL20(2) xxx>smallRNA(si3)            --------------->AGL15 --------->TOE2(3)     --------->MYB59     ------- x>smallRNA(le3)              <---------DAG2   <----------DOF2   ------>NtERF2     --------->AHL20(2) >smallRNA(fl3)     --------->AHL20(2)         <---------DAG2   --------->DEAR3(1) <---------AHL20(1) xxxxsmallRNA(fl3)  <---------AHL20(2)      <---------ALFIN1 --------->ANAC46      --------->AHL20(1) xxxxxxxxxxxx>smallRNA(i)  <-----------GT1 <---------ZAT18 <---------DOF5.7(2)    --------->AHL20(2)- xxxxxxxxxxxxx>smallRNA(s)---------->ID1   --------->ZAT18 --------->MYB52(1)     <---------ATHB12 --   gttcgaacccgggctcagacaattttttgtcacttttttaagaagcccactttatcttagttaacgcagcccatattaggcccaataaattatctacttt  15242700  Previous    Next  AGI:  At5g38150.1    Description:  PMI15 (plastid movement impaired 15). Identical to Protein PLASTID MOVEMENT IMPAIRED 15 (PMI15) [Arabidopsis Thaliana] (GB:Q9FF41); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G66840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79831.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545) Range:  from: 15240346    to: 15242177    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g38155.1    Description:  pre-tRNA. tRNA-Val (anticodon: CAC) Range:  from: 15242548    to: 15242621    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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