Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                ----------->GT1                                          ---------->DOF2                                    --------->YAB1 --------->GLK1(2)                                <----------DOF2 <---------KAN4(2)     <xxxxxxxxxxxxxxxxsmallRNA(i) --------->AHL20(2)                                           <----- ------->GT1            <-----------GT1--------->YAB1                                         <------ -----TOE1(3)        --------------->AtSPL8--------->DAG2                                     ------- -----TOE2(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           --------------->AGL15   ggttaaattagacaaaatttcaatttgtacttcccttttaataataaagggataatctttcggtatatagtttttttttgcatttactaaatttgtttaa  15230600                            --------->AHL20(2)     <---------ARR11(3) <---------AHL20(2)  <---------WOX13(1)    --------->AHL20(1) <---------ANAC58       --------->AHL20(2) <---------ANAC46      --------->AHL20(2)                                                         <-- <---------ANAC58      <---------AHL20(2)                                                      <----- ----AHL20(2)      --------->AHL20(2)                                     --------->ZAT14   --------- ---AHL20(2)       <---------AHL20(2)                   --------->YAB1--------->ZAT6        --------- -->AHL20(2)      <---------YAB1 <-------TEIL <----------ID1  <---------MYB52(2)          <---------ARR11(3)   attgcttgatattctacattataaattaaattacatacattacaaaaaaaaacaaaaatcagaaacaaacaaacactactcactgaaatacaaatcttaa  15230700                                                                              <---------AHL20(2) <--- ---------GT1               --------->AHL20(2)                             ----------->GT1     <----- ----ICU4              <---------ATHB12<-----------GT1                    --------->DAG2    ------->TEIL >YAB1  <-----------GT1--------->ICU4  --------->ZAT6               ----------->GT1       --------->YAB1 >TOE2(3)   <----------DOF2 <---------AHL20(2)        --------->AHL20(2) ---------->DOF2 <---------ATHB12   ttacacattttaaactttcactgaaatcatttaaaaatgtttcactaaatattcactaaaatacaaatattcgtaaaaagttaattgtccaatgaaactt  15230800                                                                                     <---------CCA1(1)                                                                                     <---------RVE1(1)                                                                                    <---------AHL20(1)                                  <-----------GT1                                   --------->AHL20(1)                          <---------ZAT18                 <---------------AGL15     --------->ARR11(3)         --------->AHL20(2)   <---------DAG2              ===========================================         <---------AHL20(2)   <----------DOF2       ----------->GT1                 <---------ARR11(3) ------YAB1               --------->ZAT14        --------->YAB1               <---------ZAT6 -----DOF2                <---------ZAT14       <---------YAB1   ----------->GT1---------->DOF2   ttattgtttgtttaattcgattcgacagtccactttttacgaatatttgtattatagtgaatatttatagtaaataagtagtgaaagatatttagatagt  15230900                                                                                                  ---                                                                                                 ----                                                  --------------->AtSPL8                       ------                                                  --------------->AtSPL3                  ------->GAMYB                                                  <---------------AtSPL8                 <---------MYB55(2)            >>>>>>>>>MYB98                       <--------P                              --------->MYB46(3)     <---------TOE1(3)                        <---------TOE2(3)              --------->WOX13(1)*TSS     ------->TEIL   <---------------AGL15 <---------HSFB2a(2)              ------------>CBF----------    <---------DOF5.7(2)      --------->ARR11(3)----------->GT1       <---------ANAC58   ------>MYB46(1)   --------->ZAT14  --------------->AGL15 --------->HSFB2a(2)        <---------ANAC58   ------>MYB83 ===================================MADS_MADS --------->DAG2       --------->ARR11(3)   -------->P<--   ttcagtgaacgtttaacatatgccttattaagatgctgatatttccataaggtaagtacaactatatgagagcttgcatcaatctaatccaaccaaagaa  15231000                                                                                    --------->ANAC58                                                                                    --------->ANAC58                  --------->YAB1         --------->MYB52(1)                     --------->ANAC46                 <------ZmHOX2a(2)     <---------MYB52(2)                       --------->ANAC58      --------->ARR14(2)              --------->ANAC58                        <---------DOF5.7(2)   <---------ANAC46  <---------ICU4   --------->ANAC46                       --------->ZAT14 ------>YAB1    <---------ARR11(3)    --------->ANAC58          <---------ALFIN1--------->ANAC58 ----->ICU4     --------->ARR11(3)  --------->TOE1(2)        --------->ANAC46--------->ARR14(2) --->YAB1      --------->YAB1     <------ZmHOX2a(2) <---------ALFIN1     --------->ZAT6 >DOF2<---------ARR14(2)       ------>ZmHOX2a(2)   <---------ZAT18      <---------At5g28300 -------ICU4---------->DOF2----------->HVH21   --------->ARR14(2)      <-----------GT1 --------->ATHB12   taatggcgaattctcaaagatcatcatctctgatcgatccaaggaacggtttctgcacatcaaactccacattttacagtaaacgcaaaccattggcact  15231100                                                                                       --------->ANAC46                                                                                     --------->AtMYB61                                                                                     <---------ALFIN1                                                                                    --------->MYB46(3)                                                                                 --------->DEAR3(1)                                                                                --------->ANAC46                                                                                --------->ANAC58                                                            --------->RAP2.6(2) --------->ANAC58                                                 <---------ANAC58            --------->MYB46(3)                                                 <---------ANAC58       --------->ANAC58                                                 <---------ANAC46       --------->ANAC58                                               --------->SPL7           --------->ANAC46--------->DEAR3(1)                                               ------->TEIL ------->GAMYB   ------>NtERF2--------->LBD16                             <-------TEIL    <---------SPL7 --------->DEAR3(1) <---------LBD16                  --------->bZIP60(1)------>ZmHOX2a(1)   --------->ARR14(2)--------->DEAR3(1)               --------->ANAC46 <---------At4g35610      <---------ARR14(2)--------->RAP2.3(3)  <----   tccttcaaaagaatcactcgacatcacaacattcatctcctcccaaacgtaccgtggcaaaaccgccttcatagacgcagccacggaccaccgcataagc  15231200                                                                         --------->ALFIN1                                                                       --------->bZIP60(1)                                --------->DEAR3(1)                     <---------O2                               <------NtERF2                           <---------TGA1a                               --------->ORA47(2)                      <---------ANAC58                               --------->RAP2.3(1)                     <---------ANAC58                               --------->ATERF1(1)                     <---------ANAC46                              ------>NtERF2                            --------->TGA1a                              <---------RAP2.3(1)                      --------->O2                              <---------ATERF1(1)        --------->ARR14(2)                             <---------DEAR3(1)          <---------ARR14(2)        <---------ZAT18                           <-----------HVH21        --------->ALFIN1   <---------bZIP60(1)                        ==========================HOX2a_HOX2a          --------->ANAC55(2)                        <---------ANAC58          <---------O2         <---------ANAC55(2)                        <---------ANAC58          --------->O2         <---------bZIP60(2)                        ------>ZmHOX2a(2)         <---------bZIP60(2)  <---------ANAC55(1)                      <---------ARR14(2)          <---------ANAC46    ----------->STF1                   --------->ALFIN1               --------->TGA1a    <---------TGA2(2)                  --------------------->WRI1      <---------TGA1a   ----------->TGA1                 <---------ANAC58              ----------->HVH21    ----------->HVH21                 <---------ANAC46          ------>ZmHOX2a(1)       <-----------HVH21         <---------TOE2(3)<-----------RAV1(1)<---------ALFIN1     --------->At4g35610          <-----     <----------DOF2  --------->ARR14(2)  --------->ANAC46 <---------LBD16     ------>ZmHOX2a(1)  --- -----GLK1(2)    <---------ANAC58------>NtERF2 --------->ANAC46   <---------At4g35610------>ZmHOX2a(1)   ttctccgatttatggatggccgtggatcgtgtcgccgactgtctcctccacgacgtgggaatacggagaggtgacgtggtcctagtcctctctcccaaca  15231300                                                     -------->P                                                     --------->MYB52(1)                                          --------->ATERF1(1)                                          <------NtERF2                              --------->TOE2(3)                                         <---------At4g35610                       --------->ARR11(3)                              --------->bZIP60(1)   --------->MYB55(1)             <---------ARR11(3)                              <---------bZIP60(1)  <---------MYB46(2)        ----------->GT1                           <---------MYB52(1)      --------->MYB46(3)      <---------MYB52(1)       - ----ALFIN1               <-----------HVH21        <---------MYB52(2) <---------ALFIN1            <-- ------>AtMYB61           --------->LBD16--------->At4g35610    ------>ZmHOX2a(1) --------->GLK1(1)<-   ccatctccatccccattgtctgcctctccgtgatgtctcttggcgctgtcttaactaccgctaatcctctcaacaccgctagtgaaatcttaagacaaat  15231400                                    --------->ZAT2             <---------CCA1(2)                                   --------->ARR14(2)        --------->LBD16       --------->WOX13(1)          <---------ARR14(2)      <---------LBD16  <---------ARR14(2)             --------->LBD16         --------->ARR14(2)                        <-  --------->ARR14(2)           <---------LBD16           <---------ARR14(2)                    ------ -------->LBD16               --------->MYB52(1)        <---------ZAT2               --------->REM1(2) -------LBD16                <---------ALFIN1        ----------------->AGL1  ------>ZmHOX2a(1) ------ --------ANAC46           --------->ANAC46     ---------->DOF2<---------MYB52(1)    <---------ANAC46   cgcggatagcaatccaaaactcgccttcacaacaccggaactggctcccaaaatcgccagttccggtatctctatcgtcctcgagcgcgtagaagacact  15231500  Previous    Next  AGI:  At5g38120.1    Description:  4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein. Identical to 4-coumarate--CoA ligase-like 8 (4CLL8) [Arabidopsis Thaliana] (GB:Q84P26;GB:Q8GXU2;GB:Q9FF44); similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74074.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62011.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62012.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 15230995    to: 15233435    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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