Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ------>ZmHOX2a(2)                         ================HOX2a_HOX2a                        =================HOX2a_HOX2a                        <------ZmHOX2a(2)                       --------->AGP1                                                               -                       <---------ARR11(3)                                                   ---------                 ===============HOX2a_HOX2a              --------->YAB1               <---------ATHB12     --------->ANAC58  <---------AGP1             --------->TOE1(3)                 --------->WOX13(1)     --------->ANAC58  --------->ARR11(3)         --------->TOE2(3)               <---------YAB1 <--- --------->ANAC46==============HOX2a_HOX2a        <---------MYB59<----------DOF2  <---------ATHB12  - >ANAC46         ------>ZmHOX2a(1)------>ZmHOX2a(1)  ---------->DOF2       ----------->GT1  ---------   tctacacaagttatggctcctctaagatctatcttcctattgagaactctaacctaaaatcagagtgcttcaatggattgtgtaatcaatgaagaagcaa  15120500                                                                                            ---------                                                         <---------ARR14(2)           <---------ICU4                                            --------->YAB1                          <---------ARR11(1)             --------->GLK1(2)        <------ZmHOX2a(1)  --------->ARR14(2)         <-----------ARR10             --------->ARR14(2)       ===========================HOX2a_HOX2a        --------->ARR14(2)             <---------KAN4(2)        ============================HOX2a_HOX2a       --------->GLK1(2)            <---------GLK1(2)        <----------ID1   --------->HSFB2a(2) ---------->DOF2   ---------   ---------->DOF2             --------->MYB46(3)   ----------->RAV1(2)<---------HSFB2a(2)  <-------- -------->TOE2(3)         --------->ANAC58 <---------ATHB12      <---------TOE2(3)  ------->TEIL  >>> >ANAC58   <------ZmHOX2a(1) ----------->RAV1(1)   --------->ARR11(3)  --------->HSFB2a(2)  <-------- ------ARR14(2)         <---------ANAC58  --------->ANAC58     <---------ATHB12     <---------ARR14(2) -------->TOE1(3)       <---------ANAC58 --------->WOX13(1)------>ZmHOX2a(2)       <---------ARR14(1) >ANAC58--------->CCA1(2) --------->ANAC58--------->ANAC58<------ZmHOX2a(2)        <---------CCA1(2)   aacctgaaagataggaatcttcaatggctcgcaacaaataggacaatcaagaacatctggatccaataacgttacagaaagaggcgaatctttgctagaa  15120600                                                                                            ---------                                                                                           <---------GLK1(2)                                                                                           <---------ARR14(2)                                                                                       ------>ZmHOX2a(1)                                                                                    <------ZmHOX2a(2)                                                                        <-------GAMYB --------->TOE2(3)                                                                       <---------MYB46(3)----------->ARR10                                                          ====================================HOX2a_HOX2a                                            --------->YAB1=============================HOX2a_HOX2a  <---------GLK1(1)                    ==========================HOX2a_HOX2a       --------->ARR14(2) <---------ARR11(3)         <---------ARR14(2)            ------>ZmHOX2a(2)        <---------ARR14(2) --------->ARR11(3)         --------->ARR14(2)           <------ZmHOX2a(2)--------->WRKY12 --------->ARR14(2) ------>AGL15              ------>MYB46(1) <---------ATHB12     --------->YAB1  ------>ZmHOX2a(1) >HSFB2a(2)                ------>MYB83=========================HOX2a_HOX2a   ================HOX2a_HOX2a -HSFB2a(2)              <---------MYB59 --------->WOX13(1)    <---------YAB1 ------>ZmHOX2a(2) >>>>>>TBF1           <-----------GT1  ------>ZmHOX2a(1) =====================================HOX2a_HOX2a -------AGL15 <-----------GT1         --------->TOE2(3)  ==============================HOX2a_HOX2a   gaagaactctgactatttacaaatttaccaaatcgtctctcctcaatcacaacttcacgatcgctatcatcgctcgttgatcctcgatcctcagattctg  15120700                                                      <---------DEAR3(1)                                                     <------NtERF2                                                    ------>NtERF2                                                    <-----------HVH21                                                   --------->DEAR3(1)                                                   <---------DEAR3(1)                                                   <---------ANAC46                                                 ------>NtERF2                                                 --------->LBD16                                               <---------LBD16                                              --------->MYB52(1)                                            --------->HSFB2a(1)                                            <---------HSFB2a(1)                                           --------->HSFC1(2)                                           --------->HSFB2a(1)                                           <---------HSFC1(2)       <------NtERF2                     <---------ANAC58     <-----------ARR10--------->ARR11(3)                     <---------ANAC46     <---------ARR14(2)       ------>NtERF2                     <---------ANAC58     --------->ARR14(2)     <------NtERF2      <---------ANAC58                  --------->LBD16  <---------TOE1(2)      <---------ANAC58                 --------->ANAC46 <------NtERF2      --------->TOE2(3)               <---------LBD16--------->ATERF1(1)        <---------YAB1    <-- >GLK1(2) <---------GLK1(2)  ---------->ID1<---------HSFB2a(1) <---------DEAR3(1)    --------->ATHB12   gtctcattccttgattctgagtttcgtcttcgtcttcttcaccggaacttccggcgtcggaggtctcggcgtcttcttcattttcatcgattgaaggaag  15120800                      <---------YAB1                                                   ------>ZmHOX2a(2)                      <---------WOX13(1)                                               ==============                 <------MYB83                                                        <---------ARR11(3)                 <------MYB46(1)                                                     <-----------ARR10                <---------AtMYB61                                                    --------->AGP1           --------->LBD16                                                           <---------AGP1          --------->HSFB2a(2)                                       <-----------ARR10<---------ARR14(2)          <---------HSFB2a(2)                                       --------->ARR14(2)===============          <---------LBD16      <---------ANAC58          --------->LBD16             --------->ARR11(3)         <-----------------AGL1<---------ANAC46         --------->ANAC58            --------->At4g35610         <---------LBD16       <---------ANAC58         --------->ANAC58        <-----------HVH21     <----------DOF2<---------MYB46(3)                 <---------LBD16  --------->ANAC46    <---------DAG2 <---------YAB1                     ------>ZmHOX2a(1) --------->ANAC58           *TSS   ----------------->AGL1     --------->MYB52(2)<---------ATERF1(1) --------->GLK1(2)--------->ARR14(2)   <-----------------AGL1    <-----------GT1  <---------MYB52(1)    <---------ARR14(2)<------ZmHOX2a(2)   ----------------->AG<---------MYB46(3)    <-----------HVH21     <---------GLK1(2)<---------CCA1(2) -------MYB46(3)<---------MYB46(3)     ------>ZmHOX2a(1)--------->ANAC46--------->ANAC58        -----   tcgttgccttttccgggattggtgattgttgttacttggtccttctccgtcgtctcctccgcaaactgagaatctcgccataagtcagatctaattttca  15120900                                                                                                <----                                                                                               ------                                                                                              -------                        --------->CCA1(2)                                                     <------         <---------AHL20(2)        --------->ARR14(2)                                      <---------YAB1         --------->AHL20(2)      <------NtERF2         --------->ARR14(2)                <-----------GT1        <---------AHL20(1)     <---------LBD16    --------->MYB52(1)               ----------->GT1        <---------AHL20(2) <---------TOE2(3)      ------>MYB83                     --------->ANAC55(2)        --------->AHL20(2) --------->MYB59        ------>MYB46(1)                  <---------ANAC55(2)  ========================HOX2a_HOX2a           <---------MYB59             --------------->AGL15  <------ZmHOX2a(1)=========================================================================MADS_MADS ----------->GT1   ------>ZmHOX2a(2)--------->CCA1(2)  <---------ARR14(2)   <---------------AGL15 ========HOX2a_HOX2a   <---------ARR14(2)       --------->AtMYB61          <-----------------AGL1 ========HOX2a_HOX2a   --------->ARR14(2)     >>>>>>>>>>MYB80       ------------>CBF    --------->ICU4 ----->DOF2        ----------------->AGL3 <---------ATHB12   ------->TEIL  ----------------->AGL1   aagaggataatttaattttgatccagatttaggtcgggatacaaatcaaaccaaaccgatatgaaccggtttcaataacccgaacaggtaattacgatta  15121000    --------->LBD16                                     >>>>>>>>>GATA-1  <---------LBD16                             --------->ARR11(3) --------CBF                                <---------YAB1  --------->DAG2          --------->MYB52(1) --->ATHB12                              <---------AHL20(2)---------->DOF2   <------MYB46(1) -->ICU4        <----------DOF2      --------->YAB1  <---------WOX13(1)      <------MYB83 ---YAB1  <---------YAB1            <---------YAB1<---------YAB1            --------->MYB59         -   ttgaaccgggttttgatactttgtggtatgacaaaactatgattttatgattttgatagataaaagtgattttgaagtttggtcataaacggattatatg  15121100                                                     ----------->GT1                                                     <----------ID1      <-----------GT1                                                  ---------->DOF2      --------->YAB1                           <---------AHL20(2)   --------->YAB1        <---------YAB1                     <---------ANAC46        --------------->AGL15 <---------AHL20(2)                     <---------ANAC58  <---------ARR14(2)          --------->AHL20(2)       ---------->DOF2    --------->AHL20(2) <---------------AGL15 <---------YAB1             <------ ---------->GT1      <---------ANAC58  --------->ARR14(2)   ----------->HVH21     <-----------GT1   aattgtaaataaagtttagtcatgcgtataaaatagcctaatatccactataaaaaggagaaatgacatattattatactgtattcacatgttttttttt  15121200                                             <------MYB83                                             <------MYB46(1)                                             ----------->GT1                                            <---------MYB46(3)                                            <---------------AtSPL8                                            --------->MYB111(1)                                            --------->MYB59                                            --------------->AtSPL8                                            --------->MYB46(2)                       --------->YAB1    --------->ATHB12                 <-----------GT1        <---------YAB1 <---------YAB1             --------->AHL20(2)       <---------ARR14(2)              <---------TOE2(3) ---------->DOF2         <---------AHL20(2)       --------->ARR14(2)       --------->ANAC55(2)  --------->AHL20(2)          --------->AHL20(2) -----------AGL1 --------->YAB1 <---------ANAC55(2)  --------->YAB1<---------TOE2(3)   gttttggcaaatactgtattcacaatcacatgttaagtattgatgtttggtacaattataaaagtttctaatgttttctgaaaataattttaaaaatcag  15121300                                                                        --------->YAB1                                                                        <-----------GT1                                                                     --------->YAB1                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                                                             ----------->GT1                ---------                                                             --------->YAB1               <---------ANAC46                                  --------->YAB1            ----------->GT1               <---------ANAC58                               <----------DOF2              <---------YAB1     ----------->GT1    <--                         <---------AHL20(2)          --------->YAB1--------->AHL20(2)     <---------ANAC58                        --------->AHL20(2)    <---------RVE1(1)    <---------AHL20(2)     -----------                    --------->AHL20(2)       <---------GLK1(2)  <---------AHL20(2)   <---------ICU4--                    <---------AHL20(2)       --------->ARR11(3) --------->AHL20(2)  --------->ICU4---   ttttccatacacttctccaaaatttataaaattcttttataagttcagatttttatcaaaaaatgataaattaataacaatttgtaaaaatggcgtgaaa  15121400  Previous    Next  AGI:  At5g37930.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINA-like 10 [Arabidopsis Thaliana] (GB:Q84K34;GB:Q9FKD3); similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66650.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 15119430    to: 15120899    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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