Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <------NtERF2                                                        <---------LBD16                                                      <---------SPL7                                                    --------->RAP2.6(3)                                                   <---------ARR14(2)                                                --------->TOE1(1)                                                --------->TOE2(1)                                             ------>ZmHOX2a(2)                                           <---------ARR11(3)                                           --------->ARR11(3)                                           <---------GLK1(2)                                           --------->ARR14(3)                                           --------->ARR14(2)                                           --------->AGP1 --------->LBD16                                           <---------ARR14(2)                                          <---------GLK1(1)                                          --------->GLK1(1)<------NtERF2                                    --------->YAB1 --------->ARR14(2)                                   <---------YAB1 <---------CCA1(2) ----->PCF5--------->HSFB2a(2)  <---------ZAT6 ------>ZmHOX2a(1) >MYB52(2) <---------HSFB2a(2)--------->YAB1<------ZmHOX2a(2)--------->ZAT14<---------ATHB12   tccagtatgagttcgagatgtgagtcagtttatagtgatcatagagatcctcgtatcggccggagtactcacagtccaatgaagggcatgagcatagaga  15111600                                                                   <---------MYB52(1)                                                                 <---------ANAC58                                                                 <---------ANAC46                                                                 <---------ANAC58                                                           <---------ATHB12                        --                                                          ------>MYB83                             <-                                                          ------>MYB46(1)                          --                                      --------->ANAC46  <---------MYB59                           ---                               --------------->AGL15    --------->AtMYB61                         <--                               <---------------AGL15    ------->GAMYB        ----------->HVH21    <--                              ----------------->AGL1   --------->MYB46(3)   <-------MYC3          <--                              <-----------------AGL1  --------->ANAC58      ------->MYC3          ---          <<<<<<<<<TBF1       ----------------->AGL2  --------->ANAC58     --------->At4g35610   <---   <-------TEIL              <-----------GT1       --------->ABI4(2)       <---------At4g35610  -----   gaaaatgcattcttcttcatgagttgattttttcccatataagaaactctcggtgcaaccaaacatgtcgtttgggcatgtgaccaatatcgattcaaga  15111700       <---------MYB52(1)     --------->ATHB12   <<<<<<<<<<<<<<<<<LFY   >>>>>>>>>>>>>>>>>LFY ------->ARR14(2) --------ARR14(2) ------->KAN4(2) ------>KAN4(1) --------TaMYB80             --------->ZAT2 -------KAN4(1)             --------->ANAC46 ------>ZmHOX2a(1) -------HSFB2a(1)           --------->ANAC58--------->TOE2(3) ------>HSFB2a(1)           --------->ANAC58<-----------------AGL1 ------KAN4(2)      ---------->DOF2    <---------MYB46(3) ---->YAB1      ---------->DOF2   <---------ZAT18                                                ----   atattctccattggctgataaagaaagcacaagcagggcatttgttcctcagtttgggacagcaagaagagcatgctaaatgtccattctcacactgaca  15111800                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                              ---------->DOF2                        <---------LBD16-                    <---------ICU4           <---------AHL20(2)                      --------->TOE1(2)                   --------->ICU4      --------->ANAC55(2)                --------->ANAC58      <----               --------->At5g28300     <---------ANAC55(2)                --------->ANAC46   -------- ----->AtLEC2 ----------->GT1    --------->AHL20(2) ----------->GT1       --------->ANAC58  <--------   tacaaaaaaaaaaacactgtaaaaatttcaagaaaaaaaatatgtattaaaagctggaaaaaaacaatttttagacaagaaacaaaacctggaagatagg  15111900                                            ------>ZmHOX2a(2)                                           --------->CCA1(2)                                           <------ZmHOX2a(2)                                          <---------ARR14(2)         ------>ZmHOX2a(1)                --------->ARR14(2)         <-----------HVH21                <---------ARR11(3)        --------->TOE1(3)                 <---------ARR14(3)    --------->WOX13(1)                    --------->ARR11(3) <-----------HVH21                        <---------AGP1 ---------O2                       --------->GLK1(1) -------->TGA1a                    <---------GLK1(1)      ------>NtERF2 ---------TGA1a                   --------->ARR11(3)     --------->DEAR3(1) -------->ANAC58                  --------->ARR14(2)    <------NtERF2 -------->ANAC58                  <---------ARR14(2)   ------>NtERF2 -------->ANAC55(1)               <---------ARR11(3)<-----------HVH21 -------->O2                     ==================HOX2a_HOX2a -------->bZIP60(2)              <------ZmHOX2a(1) <-----------RAV1(1) ---------ANAC55(2)              =================HOX2a_HOX2a -------->ANAC46       ============================HOX2a_HOX2a --ZmHOX2a(1)          ===========================HOX2a_HOX2a                              ---------- ->CCA1(2)             <------ZmHOX2a(1)  --------->AGP1--------->ATERF1(1)           --------->ANAC46 -ARR14(2)            <----------ID1      --------->ARR14(3)  <-------GAMYB  <---------ALFIN1   acacgtcaatccttcacagcaaataggacaatcgaggatatcaagatctagcaatgtcgccgagcgttgtctcttagccactctctcccctccatgacct  15112000                                                                     --------->TOE2(3)                <---------TOE2(3)     --------->ARR11(3)   <---------YAB1         <---------HSFC1(2)  <-----------HVH21       <---------AHL20(1)      ---------->DOF2  <---------ALFIN1       --------->YAB1--------->YAB1  --------->GLK1(1)    --------->ANAC46       ----------->GT1      <---------YAB1  --------->YAB1 <---------ARR11(3)   --------->MYB46(3) ------------>CBF--------->YAB1       ------------>CBF --------->ARR11(3) --------->PCF2    <---------ARR11(3)<---------YAB1  --------->WOX13(1) ->HVH21 --------->HSFC1(2) --------->bZIP60(2)      --------->AHL20(1) --------->YAB1         ------   tgagatatcaaagcttctaaggctcccaccatgtcacctagatatcaatagtaaaaatattatcatattttcattaatcaaacaattttaaaacatcctc  15112100                                                       ----------->GT1                                                      --------->DAG2                                                     ---------->DOF2                                                <---------------AGL15                                                --------------->AGL15                                               ----------------->AG                                               ----------------->AGL1                                               ----------------->AGL3                                               ======================================================                                               ----------------->AGL2                                            <---------SPL7                                  <--------                                           <---------ANAC55(2)                              ---------                                           --------->ANAC55(2)                          <---------DAG2                                           <---------ANAC58                      --------->ANAC46           <---------At4g35610             <---------ANAC58                      --------->ANAC58           --------->At4g35610  --------->YAB1--------->SPL7                     --------->ANAC58----   <---------REM1(1)         <----------DOF2--------->LBD16              ----------->GT1<----------DOF2 >ZmHOX2a(1)       <---------MYB46(3)     --------------->AtSPL3   ---------->DOF2   ------>NtERF2   gactgatgaaggcagaagagtttgttcgaaacttttataagacttccgtaccaaaaaaagtaaaaaaaaaaaagagtgtttaaacgccaactttttaaat  15112200                                                <---------HSFB2a(2)                                            <-----------TBP                                          ===========================================================                                          <---------------AGL15                                          --------------->AGL15                                         ------>ZmHOX2a(2)                           --------->MYB52(1)   --------->HSFB2a(2)                --------->ARR11(3)      <------ZmHOX2a(2)                <---------ARR11(3)     <---------ARR11(3)                                  --------->GLK1(1) =========================================================MADS_MADS              ----------->GT1 -AHL20(2)     <---------GLK1(1)       <---------AGP1                           <---------ZAT6 >AHL20(2)     --------->GLK1(1)       --------->ARR11(3)    --------->AHL20(2) --------->ALFIN1 ----->TOE2(3) <---------CCA1(2)       --------->AGP1      <----------DOF2   <------ZmHOX2a(1)     <-   ctcaaaacacaagtctgatatctcttaaacaacgatggatagatctatttgtagaagacaacttttaatacatctcttaggagtggtaaacacaaatcca  15112300                                                                                               <-----                                                                                               <-----                                                                                               ------                                   --------->ARR11(3)                                          ------                      ----------------->AGL3                                                   ------                     -------->P    <---------ARR11(3)                                          <-----             ----------->GT1      <---------GLK1(1)                                           <------           --------->DAG2         --------->GLK1(1)                              --------->ANAC58          ---------->DOF2    --------->DAG2                                      --------->ANAC58  --        <------ZmHOX2a(1)   ---------->DOF2                                    ======================      <---------TOE2(3)--------------->AGL15                           --------->ANAC58       -------     --------->MYB52(1)<---------------AGL15                   >>>>>>>>>MYB2   ---------->DOF2<------ --------->MYB52(1) --------->MYB52(1)           --------->TOE2(3)     --------->ANAC46       ------- =======================================MADS_MADS--------->TOE1(3)     --------->ANAC58       <------ --------MYB52(2) <---------MYB52(2)   ----------->GT1--------->ARR11(3)  --------->MYB52(1)  -------   aactaactaaggaaaaggaaactaaccagaaaaaggaaatcttgttaaataccttagagcttgaaaaccaaaaacgcaagggaaagctagaagaacacgt  15112400     <------MYB46(1)     <------MYB83 --MYC4 --MYC3 ->MYC3                                                                        <---------At4g35610 ->MYC2                                                                       --------->MYB52(1) ->MYC4                                                                    --------->ANAC46 --MYC2                                                                    --------->ANAC58 ---O2                     <---------ANAC46                                --------->ANAC58 ----->TEIL          <---------TOE2(3)                                    <---------TOE2(3) ===bZIP_DOF         <---------TOE1(3)                                   --------->MYB52(1) -->TGA1a      <---------AHL20(2)                                 ----------->GT1 ---ANAC55(2)  --------->AHL20(2)                                 --------->YAB1 -->O2         <---------YAB1                                  <---------CCA1(2)                   <- ---TGA1a     --------->AHL20(2)                            <-------TEIL <-----------GT1         ---- -->ANAC55(2) <---------AHL20(2)                  ----------->HVH21    <---------MYB52(2)  --------->ZAT14   gtatgttcggttttattttaattagggttttgtgtaagggttgaagaagtatttgacacaagttcatatcgtaattaacgcaactgatatatgtgtagtc  15112500  Previous    Next  AGI:  At5g37900.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINA-like 8 [Arabidopsis Thaliana] (GB:Q9FKD6); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT5G37910.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); similar to SIAH1 protein [Brassica napus] (GB:CAC80703.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) Range:  from: 15111133    to: 15112032    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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