Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ---------->DOF2                      --------->ANAC58                      --------->ANAC58 ----ZAT14     <---------ICU4 --->ZAT18     --------->YAB1        --------->ZAT18 --->ZAT14 <---------AHL20(2)        <---------ZAT18----------->GT1                                 < ----ZAT18--------->AHL20(2)        <------ZmHOX2a(1)               --------->ZAT18              <---   actagaattctataaaatcatcacaagctaaagcttaaggacactcttgaaatctagtaactagtaaatgggcacaattccaacttcttctctctgcaat  15108700                                 ------>ZmHOX2a(1)                             <---------ARR14(2)                             --------->ARR14(2)                     <---------ZAT18           <----------DOF2  <---------GLK1(2)                          ----------->RAV1(1)     --------->YAB1  <---------ZAT14       <---------TOE2(3)   --------->AHL20(2)    >>>>>>>>>MYB98   --------->ZAT14       <---------TOE1(3) --------->ANAC58                       - ----------DOF2      --------->ZAT18---------->DOF2          <---------ANAC55(2)                    - ------ARR11(3) ---------->DOF2 --------->TOE2(3)            --------->ANAC58                --------   ttctttaacataactttcaaaagttcactagaatcctcaaaagctaaggctactcttagaatcaagtaaatggccacagttccaactatgttcagagttc  15108800                                -------->HAHB4                                --------->ATHB12                               --------->ICU4            <---------LBD16                               <---------ATHB12          --------->TOE1(2)        <-------TEIL                          <---------ANAC55(2)      <---------ANAC55(2)         <---------HSFB2a(1)                          --------->ANAC58         --------->ANAC55(2)         <---------HSFC1(2)         <---------GLK1(2)--------->ANAC46         --------->ANAC58            --------->HSFC1(2) -------->MYB46(3)        --------->ANAC58         --------->ANAC46         ---------->DOF2 ---------------->AG      --------->ANAC55(2)      --------->ANAC58       <---------YAB1      <------ ->GLK1(1)   <----------DOF2   <---------YAB1    <-----------GT1      <XXXXXXXXXXXXXXXXXXXXMIR839   taaccaaaacagaaactttctgaaaaatacgaaatgattcaatttgagaaattacgaaacctggaagatgggaattgtgaaagcttcgtagcaaatggga  15108900                <-------TEIL               <------ZmHOX2a(2)              <---------ARR11(3)                          --------->REM1(1)              <---------ARR14(2)                         <-------TEIL              --------->ARR14(2)                      <---------At4g35610      <---------ARR14(2)                              --------->At4g35610      --------->ARR14(2)                              --------->ZAT2      --------->GLK1(2)                    <---------ANAC58                                        <-      <-----------ARR10                    <---------ANAC58  --------->ZAT6           <---------ANAC58     <---------GLK1(2)<---------YAB1<-----------ARR10 <---------ZAT2             <----------DOF2  <-- ----ID1      --------->AGP1 --------->ETT(2)<---------CCA1(2)        ---------->DOF2 <---------ANAC58   caatcgagaatctccagatccattagcattgtcgagcgtttcttagcgtctctcttagctgcatcactagaagaaagttgtctcttttgcgagagaatgc  15109000                                                 <-----------HVH21                                             <---------ATHB12                                            -------->P                                            ------>MYB46(1)                                            ------>MYB83                                           --------->MYB55(1)                                          --------->MYB46(3)                                          --------->DEAR3(1)                                          <---------MYB55(2)                                          <---------MYB111(1)                                         <------NtERF2   --------->At4g35610                         --------->GLK1(2)<---------MYB46(2)                       <---------HSFC1(2)--------->MYB46(3)                       --------->HSFC1(2)--------->DEAR3(2)                       <---------HSFB2a(1)--------->AtMYB61                    <------NtERF2       ------>NtERF2    <---------At4g35610              --------->HSFC1(1)                   ------>NtERF2      <------NtERF2<---------ANAC46                       <---------HSFB2a(2)    <------ZmHOX2a(2)  --------->HSFB2a(1)<---------MYB111(2)                  <----------DOF2   --------->AGP1  --------->LBD16   <---------ATERF1(1) --------->CCA1(2)     <---------DAG2 --------MYB52(1) <---------LBD16   --------->ANAC46 <------NtERF2  --------->TOE2(3)     --------->HSFB2a(2) -----GAMYB      <---------LBD16   <---------LBD16 --------->ETT(1) --------->TOE1(3)     <---------HSFC1(1)   tgttagatccaattccttcgccgggagattccaaaatcgcggcaccaaccatgtcggagagatgactaaaccctaaattcgcttttagtcttctcgaaaa  15109100                                             <------MYB83                                             <------MYB46(1)                                             ----------->GT1                                         <---------MYB46(3)                                        <---------WOX13(1)                                    <---------WOX13(1)          ------------>CBF                  <--                 --------->GLK1(2) <------------CBF            <<<<<<<<<<<<<<<<<LFY    --------->CCA1(2)     ----------->GT1    *TSS      --------->ATHB12       ---------->DOF2              --------->ARR11(3)   ctgagagaggcaaatagagaatttagttgattttgttcattgatggatggttttacagagaaaggagacaatggcacaaactatagatgatatgggcttc  15109200                   ---------->DOF2              --------------->AGL15              <---------------AGL15             ----------------->AG             ----------------->AGL3             <-----------------AGL2            <----------DOF2             ----------------->AGL1         <---------ARR11(3)                                    <--             <-----------------AGL1   <-----------GT1                                          <-----             ------------>CBF       <---------AHL20(2)                        --------->ICU4 <-------      ------------>CBF           --------->AHL20(1)                     <---------ARR11(3)  ---------  --------->ARR11(3)        --------->AHL20(2)<---------DAG2      <-----------GT1           --------- -------MYB52(1) <---------ATHB12<---------AHL20(1)  <---------YAB1     --------->ARR11(3)  <--------   gatagttcttcaattcccaattaaggcccatataatatataaacaatacctttttttgataaacttataaacaatatctaatttttaagtctattaatat  15109300                   <---------AHL20(2)                   --------->YAB1                   --------->AHL20(2)                  <---------YAB1                --------->YAB1                                                                -------               --------->AHL20(2)                    <---------ZAT6                      ------------    --------->AHL20(2) --------->AHL20(2)     <---------TOE2(3)                          <----------- ---------GT1  <---------AHL20(2)           <---------AHL20(2)                          ------------- ----ICU4      <---------YAB1 <-----------GT1 <---------YAB1                            <------------ --TOE2(3)    <---------AHL20(1)            --------->AHL20(2)                          ------------- >AHL20(2)    --------->AHL20(2)     --------->AHL20(2)             ------->TEIL        <------------ >YAB1 ---------->DOF2 <---------AHL20(2)  --------->AHL20(2)    --------->ANAC55(2)    ------------- -AHL20(2)    --------->AHL20(1)     <---------AHL20(2)  ---------->DOF2  <---------AHL20(2)<--------   ttacaatataaaagaatataattatatatataaaaccatttaaaaattaatattagtcttaaagtttatgtattttttaattcttcaattcccaattaag  15109400                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                        <---------AHL20(2)                                                     <---------AHL20(2)                                                     <---------ICU4                                                     --------->AHL20(2)                                                     --------->ATHB51                                                    <---------YAB1                                                    --------->ICU4                                                  <--------HAHB4                                                  --------->ATHB51   --------->AHL20(2)                             <---------ICU4 --->DOF2                                         -------->HAHB4 --->AGL15                                        <--------ATHB1 ----AGL15                                        --------->YAB1                                  --- ---->AGL3                                       <---------ATHB51                             ------- -----AGL1                                       --------->AHL20(2)                           <------ ---->AGL1                                       <---------YAB1                            --------->REM1(1) -----AGL2  --------->MYB52(1)                 --------->YAB1                --------->ANAC55(2)  <-- ---->AG<---------AHL20(1)                    <---------ATHB51   --------->TOE2(3)    <-----------GT1 -ATHB12--------->AHL20(1)        <-----------GT1--------->ICU4 <---------ZAT6  ------->TEIL---------   gcccatataatatataacagaaacaatgtctaaattttacaaaatacaataataattatttatttagtcttaatagtttatgtattttttgctacattaa  15109500                                                                                            ---------                                                                                            ---------               <---------YAB1            --------->AHL20(2)                                 ---------          <---------ICU4                 <---------AHL20(2)                             --------->YAB1 ------>AHL20(2)                  <----------DOF2                                      <---------ATHB12 -->AHL20(2) <---------AHL20(2)------->TEIL                                          --------->WOX13(1) ---AHL20(2)<---------YAB1  <---------REM1(1)                                  --------->ALFIN1 -------AHL20(2)     ---------->DOF2    <---------AHL20(2)                  <---------ARR14(2)     -- >TOE2(3)--------->ICU4    --------->MYB59   <---------AHL20(2)             --------->ARR14(2)-------   ttaataagctaatttttatttttaaaagttatgtagcttttatttatttttttgtcaaaaatgtggttttgaagttgggatttggggcaatcacaaacca  15109600  Previous    Next  AGI:  At5g37890.1    Description:  seven in absentia (SINA) protein, putative. Identical to E3 ubiquitin-protein ligase SINA-like 7 [Arabidopsis Thaliana] (GB:Q9FKD7); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT5G37910.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); similar to SIAH1 protein [Brassica napus] (GB:CAC80703.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc fing Range:  from: 15107516    to: 15109124    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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