Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <------ZmHOX2a(1) -----PIF4 ---->PIF4 ---->MYC3      --------------->AGL15 -----MYC3      ------>ZmHOX2a(1) -----MYC4      <---------------AGL15                                                               - ---->PIF5     <-----------------AG                                                          -------- -----PIF5     <-----------------AGL2                               --------->AHL20(1)   --------->TOE2(3) -----MYC2     <-----------------AGL1    --------->ANAC58           <---------AHL20(1) <---------YAB1 ---->MYC2     <-----------------AGL3    --------->ANAC46   --------->ANAC46       ------->TEIL    <- >DOF2         --------->TOE2(3)         --------->ANAC58   --------->ZAT6      <---------ATHB12-----   catgcaggacatttattcctcaatttgggacagcaagaagaacaggccaaatgcccatttccacactaaaaatattaaaccaatgaattttcattaaaag  15091700                                     --------->AtLEC2                                    ------>ZmHOX2a(1)                                   <---------ANAC58                       --------->CCA1(2)                               <---------ICU4     --------->At5g28300   <-----------GT1                            <---------ATHB12 ---------->HVH21     <---------ARR14(2)                     <---------AHL20(2)                   --- -->DOF2              --------->ARR14(2)                    <---------AHL20(1)        --------->YAB1 ----------HVH21     <------ZmHOX2a(1)            -------->P--------->AHL20(1)       <---------ATHB12 ---->At4g35610     ----------->GT1<---------ANAC58  ----------->RAV1(1) <----------ID1           <--   ctgtcacagtaacaacgtagagaggatataaactcgtccttgcaaaactatctacccacatatatattttcaataactacaaatccaaacatgaactagg  15091800                                       --------->YAB1                              --------->YAB1                             <---------YAB1                           -------->ATHB1                           <---------ICU4                           --------->YAB1                          <---------YAB1                          <---------AHL20(2)                                            <------ZmHOX2a(1)                          --------->AHL20(2)                                     ---------->DOF2                          --------->ICU4                   ---------->DOF2    --------->YAB1 ------>ARR14(2)          --------->AHL20(1)           ---------->DOF2   <---------ATHB12     <------ -------ARR14(2)<-----------GT1 <-----------GT1  ----------->GT1   <-----------GT1     ----------->GT1   gatactctacttctatatttactccaaaattattatactcttcataatgcaaagtttaaaagaaagttgaaaccattcattcagaaagaaggagaaacaa  15091900                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                  <---------MYB52(1)                                                                 <-----------HVH21                              <------MYB83                       <-----------TGA1                              <------MYB46(1)                  ------>ZmHOX2a(2)                           <---------ANAC58                    <-------TEIL                 --------->ARR14(2)                           <------ZmHOX2a(2)                 <---------KAN4(2)                           <---------ARR14(2)                 --------->GLK1(2)                           --------->AGP1                <---------GLK1(2)                            --------->ARR11(3)    <---------ARR14(2)    <---------LBD16        <---------ANAC58                  --------->ARR14(2)    <-----------ARR10    --------->TOE1(2)     --------->ATHB12                   <---------ARR11(3)    --------->ARR14(2) ---MYB52(2)   <------ZmHOX2a(1)                       --------->ARR11(3)  <----------CDC5   acaaaacctggaagacaggaatcttcaatgcttggtagcaaatgggacagtcgagaatatcaagatccgtcagcatcgctgagcgggtcttatcaactcg  15092000                                                                                       <<<<<<<ZML2                                                                                    --------->HSFB2a(2)                  --------->CCA1(2)           <-------TEIL                          <---------HSFB2a(2)                 --------->ARR11(3)          <------ZmHOX2a(2)                   ------>NtERF2                 <---------ARR11(3)         <---------ARR11(3)          --------->ANAC46                 <---------ARR14(2)         --------->AGP1      --------->YAB1<-----------HVH21          --------->At4g35610               --------->ARR11(3)  --------->AHL20(2)<------NtERF2  <---        --------->ATHB12             <----------DOF2 <----------DOF2    <---------ALFIN1  -----------   cttccttccatcatcggaagatatagaagaacagtgtctcttttgagatccatttctttcgctcaataaaactcccaccatgtcgcctagaactcaatag  15092100                                                                                                    <                                                                                                   --                                                                                                 ----                                                                                                <----                                                                                               ------                                                                                               <-----                                         -------->P                                            ------                                        ------>MYB83                                           <-----                                        ------>MYB46(1)                                        <-----                                      <---------MYB59                                          ------             --------->TOE2(3)        <---------MYB111(1)              <---------ANAC46        <-----     ----------->GT1 --------->AHL20(2)--------->MYB55(1)              <---------ANAC55(2)     ------  --------->ALFIN1--------->YAB1      <---------MYB46(2)               --------->ANAC55(2)    ------- ---ZmHOX2a(1)   <---------YAB1      --------->ANAC55(2)              <---------TOE2(3)       <------ ->CBF       --------->TOE1(3)     <-----------GT1        --------->TOE2(3)                  --------   gagagagtggctaaaccttataatcaaatagttttttttacctaacccctaatcttgttatcttattttgttgacgtaaaccctatgacttcgacgagat  15092200          <----------DOF2          <---------DAG2       <-----------GT1 ---------TOE1(2) ---->ZmHOX2a(1) -->ZmHOX2a(2)                --------->AGP1 --ZmHOX2a(2)                 --------->ARR14(3) --->AGP1 --------------->AGL15 ------>ZmHOX2a(2) ----ARR14(2)                 --------->ARR11(3)                           <<<<<<<<<<MYB80 --->ARR14(2)                 <---------ARR14(2)                          <------MYB83 ----ARR11(3)                 <---------ARR11(3)                          <---------MYB46(3) ----GLK1(2)                  <---------ARR14(3)                          <------MYB46(1) --->ARR14(3)                 --------->ARR14(2)                         <---------AtMYB61         <- ----ARR14(3)               ----------->ARR10                  --------->ZAT14                     <- --->ARR11(3)             ---------->DOF2                     <----------DOF2                     --- -->GLK1(1)     <---------TOE2(3)                          <-----------GT1----------->GT1         <-- ---GLK1(1)     <---------TOE1(3)       --------->YAB1<---------GLK1(2) <--------P              <---- --->ARR10<---------------AGL15<------ZmHOX2a(2)    <---------MYB59    <---------MYB52(1)      <-----   cctcggtttttactttttagggttttgggaaagatcttccaaatataacgagaaccgaatttcactttagtcgggttggtttaaaactaaactattcggt  15092300                                                    <-------GAMYB                             >>>>>>>                                                   <---------MYB46(3)                         >>>>>>>                                                   <------MYB83                               >>>>>>>                                                   <------MYB46(1)                           -------- -----MYB46(1)                                    <---------AtMYB61                          -------- -----MYB83                                       --------->MYB59           <---------ATHB51 -------- ------>MYB59                                 <------MYB83                  <---------AHL20(2)<------ -------AtMYB61                         ----------->ARR10             ----------->GT1<---------At4g35610 -----MYB52(1)              <---------AHL20(2)<------MYB46(1)   <---------YAB1       --------->At4g35610 --GAMYB             ---------->ID1 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->At5g28300   --------   taggtttttatttctctgattttgttctatttaagttcagtttagatttggtttggttgtagtcttgttatagggtaaattatgggcagtagcctttgac  15092400       <----------DOF2    <-----------GT1                                                                            <----- >>>WRKY62                                                                               ------>ZmHOX2a(1) >>>WRKY18                                                                              <---------MYB59 >>>WRKY40                                                       ----------->TGA1  --------->YAB1 ->WRKY12                                              <---------TOE2(3)          <---------YAB1 ->WRKY45                                       <-----------------AGL1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->HVH21 <---------TOE1(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->HVH21<---------ATHB12  - ---WRKY18(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)-------- ->WRKY38(1)      <-----------GT1   <----------DOF2   ---------->DOF2   ---------->DOF2--------------   caagttttactttcaggtattgacaatatgaattgggcctttcaacaattagccattaaggcaaaatgtgacgaaaatgcccctatcattcctaattgtg  15092500                  --------->MYB111(1)                  --------->MYB46(2)                  --------->MYB52(2)              <---------TGA1a              --------->O2              <---------ANAC55(2)              --------->ANAC46              --------->ANAC55(1)              --------->ANAC58              <---------O2              --------->ANAC58        --------->ANAC58        --------->ANAC58                                                   <---------AHL20(1)       <-------TEIL                                                        --------->AHL20(1)       --------->SPL1(2)                                                   <---------AHL20(2)      <---------SPL1(1)                                                   --------->AHL20(2)      --------->SPL1(1)                                                   --------->YAB1     <---------SPL7                                                      <---------YAB1    --------->ANAC46                                                  <---------YAB1    --------->ANAC55(2)<---------YAB1                                 <---------AHL20(2)   <---------------AtSPL8      --------->ANAC58                      <---------AHL20(1)   <---------------AtSPL3      --------->ANAC46                    <---------TOE2(3)   --------------->AtSPL3 <------ZmHOX2a(2)               --------->AHL20(2)    <---------AHL20(2)   <-------TEIL <---------MYB52(1)                        <---------AHL20(2)<---------YAB1 ----YAB1     --------->TGA1a  --------->ANAC58  <---------MYB52(1)<---------YAB1                <--- -------->CCA1(2) <---------MYB46(3)           <---------ZAT6    <---------AHL20(2)             <---- ->YAB1--------->SPL7 xxxxxxxxxxxxxxxx>smallRNA(i)--------->ZAT14--------->AHL20(2)     --------->TOE2(3) --->AG------->TEIL  <-----------GT1           ----------->GT1  --------->AHL20(2)    <---------YAB1   atatatacgtacggacacgttagttacgatcagacggaagtacaatgtacagttaactaattaaaaattaatattattatatttcattttcattagtttt  15092600  Previous    Next  AGI:  At5g37870.1    Description:  seven in absentia (SINA) family protein. Identical to Putative E3 ubiquitin-protein ligase SINA-like 6 [Arabidopsis Thaliana] (GB:Q9FKD9); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT5G37910.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); similar to SIAH1 protein [Brassica napus] (GB:CAC80703.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zin Range:  from: 15090994    to: 15092081    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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