Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->YAB1       <---------ICU4                                <------ZmHOX2a(2)     ---------->ID1      <---------ATHB51                        --------->ATHB12         <---------ANAC46      --------->ICU4                         <---------AHL20(2)      <---------MYB46(3)      <---------ATHB12   <---------ATHB12    <---------YAB1         --------->ALFIN1  <---------DAG2 ---ARR14(2)        --------->TOE2(3)        --------->AHL20(2)  --------->DAG2       <----------DOF2 -->ARR14(2)   ---------->DOF2        <---------ARR11(3)       ---------->DOF2  <-----------GT1   ---   cgagcccaataatgaaacaaagcctcaaacattctaacaagacctatataattggatcatccctacaaaggtggtttgtttttttcaacttttttttttg  15062100                                                                 --------->YAB1                                                                 <---------ICU4                                                               --------->AHL20(1)                                                               --------->AHL20(2)                                                              --------->YAB1                                                          <------ZmHOX2a(1)           <----------DOF2                       --------->ANAC55(2)  <---------ATHB12               <-----------GT1 <---------ANAC55(2)<---------ICU4 ------>WRKY18(1)  <-----------GT1    --------->AGP1     ----------->GT1  ------>ZmHOX2a(1)   gtcaaacattctacttttgttatacaatctgattttaacaggtctacgactacgtagtgaggaaaaataataactcctacaaatgtgcaactccaactag  15062200                                                       <---------MYB46(3)                                                       <-----------RAV1(1)                                                     ----------->RAV1(2)                         <---                                               <---------DAG2                                    ----                                          ------>ZmHOX2a(2)                              --------->YAB1                  <-----------GT1       <---------ARR11(3)          --------->YAB1       --------->ATHB12                 <-----------GT1        --------->ARR11(3)         <---------ATHB12      <---------ICU4              <----------DOF2      --------->TOE2(2) <---------At4g35610   --------->ZAT18--------->TOE2(3)       <-----------GT1       --------->ANAC46  <----------DOF2   --------->WOX13(1)     <---------ATHB12 --------------->AGL15     <---------ALFIN1 ------>ZmHOX2a(1)  ------------>CBF         --------->ICU4   actcccattttagcatcttttacccatctccacataacatatgatcctacttttcatctgttgcatccaatcacaagtctactattccaaatcattagat  15062300                              ----------->GT1                                          <----------DOF2                 <---------WOX13(1)        --------->AHL20(2)      <---------TOE2(3)<-----------GT1  ------------>CBF           <---------TOE2(3)                    ---------->DOF2 <---------AHL20(2) ----TEIL       <------------CBF      <---------AHL20(2)      --------->ZAT6<---------MYB52(1)      - -------->CBF <---------YAB1 <---------TOE1(3)           <----------DOF2  <---------ANAC46       ----   tcaatccaatacttctgtgattgtttcatttaaggtatatttcattttaaaaaaaaactctttatcactaaagttttcgtttattttttctttctgaaat  15062400                <----------DOF2              <---------At4g35610              --------->At4g35610  --------->RVE1(1) --------->ARR11(3)          --------->AHL20(2) --------->GLK1(2)           <---------AHL20(2) <---------ARR11(3)         --------->AHL20(2)                                                  ----- -------->RVE1(1)    <------ZmHOX2a(1)                      <---------ARR11(3)          <----------ID1 ----->YAB1 <-----------------AG                            --------->ARR11(3)        >>>>>>>>>TBF1   aaaaatctctccattcagctttaggaaaaaaaaaatttgtttctaagaacaaatccaaaaaatgtcttcgcatagtgatgaaatcgaagaagaacaaata  15062500                                                     --------------->AtSPL8                         -                                                     --------------->AtSPL3              ----------->GT1                                                     <---------------AtSPL3             --------->DAG2                                                <-------GAMYB                         ---------->DOF2                          <---------WOX13(1)    --------->At5g28300            <---------SPL7       -                       --------->ICU4 <---------ARR14(2)                      <---------ANAC58      <         ---------->DOF2--------->ATHB12       ----------->GT1                <---------ANAC58      < ---->ARR11(3) ---------->DOF2       <------ZmHOX2a(1)   ------->TEIL         <---------DAG2   ------   tcaagaattgagaaaggcaaaggcaaagattgccaaggaggaatcgagacggttatatgtacttctcccagcattgtctgccttacccaaaaggttttaa  15062600                --------->ATHB12                -------->ATHB1                --------->ATHB51                -------->HAHB4                <---------ICU4               <---------ATHB51               <---------YAB1            <---------YAB1          ----------->GT1          --------->YAB1      <---------YAB1      <---------AHL20(2)      --------->AHL20(1)                                                                      <------      --------->AHL20(2)                                                                     <-------     --------->AHL20(2)                  <---------ICU4                                  <---------AHL20(2) <---------AHL20(2)                      --------->YAB1                                  --------->AHL20(1) -------->AHL20(2)                       -------->HAHB4           <----------DOF2        --------->AHL20(2) -------->AHL20(1)                      --------->ICU4            <---------WOX13(1)    --------->AHL20(2) ---------AHL20(1)                    --------->YAB1            --------->ATHB12 <----------DOF2 ---------AHL20(2)      ----------->GT1 <---------YAB1   --------->LBD16        --------------->AGL15 --->AHL20(2)  --------->ICU4        <---------YAB1    <---------LBD16          --------->TOE2(3)<---   aataaaattttattgtaattattgcatagttatatgtttataatgataacaaaattttgcgcaaattgatttatggtgttttcctttaaaattaattaca  15062700                                                                                 --------->YAB1    --                                                                             ========================                                                      <---------MYB46(3)     ========================                                                  --------->ALFIN1<---------ANAC58               <---            --------->ATHB12                      <---------AtMYB61          <------ZmHOX2a(1)   ----           --------->ICU4                       <---------ANAC58  <---------ANAC58               <---    <---------At4g35610                         <---------ANAC58  <---------ANAC46               ----    --------->At4g35610   <---------AHL20(2)    <---------ANAC46  <------------------SPL14   <------- ---At5g28300 <---------WOX13(1) --------->ARR14(2)<---------MYB46(3)  --------->SPL7        -------- ----GT1   <---------YAB1--------->AHL20(2)  --------->ALFIN1   --------->ARR11(3)  --------->YAB1<-- ------At4g35610     <---------MYB59  <---------LBD16<---------AtMYB61 <---------LBD16      <--------   gttgatagcagagatgattgggacctattttatagtattctctggatgtggagtggtggtagtgaatgtcttgtacggaggaacaataacatttccaggg  15062800       <---------ANAC58       <---------ANAC46      --------->MYB52(2)                                                                 <----------DOF2 ---->ZmHOX2a(2)                                                                        <---------ANAC58 ====HOX2a_HOX2a                                            --------->ZAT14            --------->MYB52(2) =====HOX2a_HOX2a                                           <---------ZAT14          <---------MYB52(1) ------ARR11(3)                                             <---------ZAT18      <---------At5g28300 ----->ARR11(3)                                          --------->LBD16         <---------DOF5.7(2) ------ARR14(2)                         <---------ZAT14<---------LBD16         --------->DOF5.7(2) ----->ARR14(2)                       --------->ZAT6 <---------ARR14(2)        <---------MYB52(1) --LBD16                        --------->ATHB12     --------->ARR14(2)       <---------RAP2.6(3) ->LBD16              <---------YAB1<-----------GT1 <---------GLK1(1)         <-------GAMYB ----ZmHOX2a(2) <---------YAB1 --------->ICU4       --------->GLK1(1)      ------>NtERF2<---------ANAC58 -LBD16<---------ANAC58        <---------YAB1 <-----------HVH21      <-----------GT1<-------GAMYB   atctgtgttacttggggtctcattgttatggtcatgatttactctactggtcacatttccggtgcacattttaaccctgccgttaccgttactttcgcca  15062900                                                                <---------GLK1(2)                                                            ------>ZmHOX2a(2)                                                           --------->CCA1(2)                                                           <------ZmHOX2a(2)                                                          --------->AGP1   <---------ICU4                                                          <---------AGP1   --------->YAB1            <---------ANAC58                              <---------ARR14(2)            <---------ANAC58                              <---------ARR11(3)              <----------      <---------DEAR3(2)                                  --------->ARR11(3)             --------->ANAC46      <---------MYB46(3)             <----------DOF2      --------->ARR14(2)          <---------WRKY12  ----------->HVH21 <-----------RAV1(2)           ------>ZmHOX2a(2)       <---------ATHB12--------->TOE2(3)   ttttccgacggtttccttggcatcaggtcatcatctattcttttagccttgatcgaataagatctagattgtttcaaacattacaagttcaacgtcaaga  15063000  Previous    Next  AGI:  At5g37810.1    Description:  NIP4;1/NLM4 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel. Identical to Putative aquaporin NIP4-1 (NIP4-1) [Arabidopsis Thaliana] (GB:Q9FIZ9); similar to NIP4,2/NLM5 (NOD26-LIKE INTRINSIC PROTEIN 4,2), water channel [Arabidopsis thaliana] (TAIR:AT5G37820.1); similar to Probable aquaporin NIP-type (Pollen-specific membrane integral protein) (GB:P49173); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 15062462    to: 15065037    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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