Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              --------->ANAC58                                      <      --------->ANAC58              ----------->HVH21                                       <xxxxxxxx      --------->ANAC58              --------->ANAC46                                        <--------    ---------->DOF2              <---------WRKY38(1)           ------>ZmHOX2a(1)         ------>NtERF2 ------>TEIL          <---------WOX13(1)      --------->ANAC58--------->TOE2(3)          xxxxxxxxxxxx -->DEAR3(1)   <---------ATHB12  <---------WRKY12   <-------TEIL         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   tgaatcgaaagcatccaatcgttgaatgaccacggtccacgacggagcacgagattcatcgcttcctcagactggaacttgaattgaactctgcctttgt  14984400                                                                                  --------->ARR14(2)                                                                    --------->GLK1(2)                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  --------->HSFC1(2)                                                                  <---------MYB46(3)                --------->ANAC58                                  <---------HSFB2a(1)             <---------SPL7--------->ANAC58                       --------->HSFB2a(1)            <xxxxxxxxxxxxxxxxsmallRNA(i)                          <---------HSFC1(2)       <---------MYB46(3)            --------->ANAC58                                     <---------TOE2(2)>>>>>>>>>GATA-1            --------->ANAC58                                  --------->ANAC58    >>>>>>>>>GATA-4          <---------ATERF1(1)                                 --------->ANAC58    >>>>>>>>>GATA-3         --------->ANAC46---------->DOF2                     <---------LBD16      >>>>>>>>>GATA-2         ----------->HVH21 --------->ANAC58              --------->ANAC58     --------->LBD16      ------>NtERF2--------->GLK1(2)                     --------->ANAC46    <---------AtLEC2 --------->YAB1 --------->ANAC58                         --------->ANAC58    <---------ANAC58 ---------ATHB12--------->ANAC46      <---------O2    <---------ATHB12       <---------ANAC46   ----- xxxxxxxxxxxxxxsmallRNA(fl3)    <---------ALFIN1    ------>ZmHOX2a(1)  <---------YAB1 <---------At5g28300 --DOF2 --------->SPL7  <------ZmHOX2a(1)         <-----------------AGL1     <---------ANAC58 <------ xxxxxxxxxxx>smallRNA(si3)<---------GLK1(1)      ---------->ID1  <---------TOE1(2)<---------ARR14(2)   caataatccgcccgacgcacgaatcaggaaagccccaaactcgtggcatttgtcctatcaaggcacggaggttctgtttgcgtggattcacagttgttac  14984500                                                                   <---------YAB1                                                                  --------->TOE2(3)                                                                 --------->YAB1                                                                 <---------ICU4                                                             <-------TEIL                                                       --------->MYB52(1)                                                       ------>NtERF2<---------ICU4      ------>ZmHOX2a(1)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)    ----------->RAV1(2)                                                      <---------ALFIN1              <---------ARR14(2)        --------->MYB52(1)                            --------->DEAR3(1)            --------->ARR14(2)       <---------ARR14(2)------>NtERF2               <---------ABI4(2)   --------->ANAC58 ---->MYB46(3)<-------TEIL                           --------->MYB46(3)  --------->ANAC58         <-- -----GT1    <-----------HVH21         --------->GLK1(2)<------NtERF2    --------->ANAC46  ------->TEIL   caccaaggagaaacggttcacatatgcagcctgtgaacaaaattctgaagttagagccaccggttcatcatcaatacccaagttcaaatcctgaaccgat  14984600                 <---------ICU4                 --------->ATHB12                                      <------ZmHOX2a(1)                <---------YAB1                            --------->DAG2                --------->ICU4                           ---------->DOF2              --------->YAB1                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------HVH21 ----------->HVH21        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ---------GT1<---------ATHB12  >>>>>>>>>TAC1----------->GT1--------->DAG2                         <--   ttacgaagtctgtcactcatgattgtggatgacagtgtttgagaaatggtgaattgcagaaaagggagaagaaggagcgaattgaagtatatataagttt  14984700                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                        <-----------HVH21                                                                                        <---------RAP2.6(3)                                                                                       --------->RAP2.6(2)                                                                                       --------->RAP2.3(3)                                                                                       --------->RAP2.3(2)                                                                                       --------->RRTF1(3)                                                                                       --------->RRTF1(2)                                                                                       --------->DREB2C(2)                     --------->MYB111(1)                                              --------->RRTF1(1)                     --------->MYB46(2)                                               --------->ERF1                     <---------MYB46(3)                                               --------->RAP2.3(1)                     --------->MYB52(2)                                             --------->DEAR3(1)                    <--------P                                                      ------->GAMYB              <-----------RAV1(1)                                                  <------------AtMYB77              <---------ANAC58                                                     --------->MYB46(3)              <---------ANAC58                                                    <---------At5g28300              <---------ANAC46                             --------->AtLEC2      --------->MYB52(1)         <-------GAMYB                                ------->GAMYB              <---------ARR14(2)        <---------MYB46(3)                           <------------AtMYB77        <-----------GT1        <---------DEAR3(2)                        <---------YAB1                 --------->ARR14(2)--       <---------RAP2.6(2)       ---------->DOF2--------->YAB1              ---------->DOF2        --       <---------ANAC46 <-----------GT1         <---------ICU4       <---------WOX13(1)--------->DEAR3(1)       <---------DEAR3(1)       --------->LBD16<---------YAB1       <------------CBF--------->ANAC46<     ------------>AtMYB77<---------At5g28300   --------->ICU4   <xxxxxxxxxxxxxxxxsmallRNA(i)      --- -------CCA1(2)  <---------MYB46(3)            <---------ATHB12*TSS--------->ATHB12--------->DEAR3(2)   gtatccatggcggtttgtgtgggtagttaccctccgaaagtgaagggcaatgataactgccatggaaactgattggcagaaagtaaccgccgtcataaaa  14984800                             --------->ARR14(2)                             <---------ARR14(2)                          ---------->DOF2                          <------NtERF2                             <xxxxxxxxxxxxxxxxsmallRNA(i)                        --------->ETT(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------DEAR3(1)  <------ZmHOX2a(1)      ----------->GT1                 <---------YAB1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->MYB59            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxsmallRNA(i)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <------------CBF  --------->MYB46(2)   ---------->DOF2   <---------MYB46(3) <---------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->REM1(2)  <---------AtMYB61 --------->LBD16     --------->ALFIN1 ------->At5g28300--------->YAB1      ------>NtERF2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------DEAR3(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxx -------->GT1<---------GLK1(2)      <---------LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxx   ccgtgaaaagagacagattatgatggtcggagaactgctccggcgaggagaattgaaacggtgtgagttaggcaaaaaatcgccctcagagagagagaga  14984900                                                                            --------->AHL20(2)                <---------ICU4                                              <---------AHL20(2)               --------->ICU4                                              --------->AHL20(2)             <---------ICU4                                                <---------AHL20(2)             <--------HAHB4                                             --------->YAB1             --------->ATHB51                                         --------->AHL20(2)   --------->ANAC58            --------->ICU4                                            <---------YAB1       <---------O2            <---------YAB1                                            <---------AHL20(2)   --------->O2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    --------->TOE2(3)     <---------ANAC55(2)          <---------------AGL15                                    --------->AHL20(1)      --------->ANAC58          --------------->AGL15                                    <---------AHL20(1)  <-----------GT1          --------->YAB1                       <----------DOF2--------->AHL20(2)     xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------GLK1(2)   --------->AHL20(2)      xxxxxxxxxxxxxxxx xxxxxxxxxx>smallRNA(fl3)          <-----------GT1       --------->AHL20(2)<---------AHL20(1)   gccatcgttttagcataattagtagtagtacttgattttacaagaatttcttttttaaaaaaaataaaaaatattaataaaattagatttaacacgtcta  14985000                                        <---------AHL20(2)                                        --------->AHL20(2)                                       <---------AHL20(1)                                       --------->AHL20(2)                                    --------->YAB1                                  <---------AHL20(2)                                  <---------YAB1                                  --------->AHL20(2)                                 --------->TOE2(3)     <---------O2         ---------->DOF2                     --------->AHL20(2)<---------AHL20(2)      <---------ARR11(3)           <-------MYC3           <----------DOF2     --------->AHL20(1)      --------->ANAC46  --------->ANAC46   ------->MYC3     <---------GLK1(2)         <---------AHL20(1)      --------->O2 <----------DOF2       xxxxxxxxxxx xxxxxxx>smallRNA(si3)    --------->AHL20(2)       <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxx>smallRNA(fl3)   --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-------TEIL   tatacaagaatttcttttttaaaaaaaataaaaaatattaataaaattagatttaacacgtcgattatctctttcactcaaagtatttgatacatgtgtt  14985100                                                     <---------ICU4                                           --------->TOE2(3)                                   <-----                                          --------->ATHB12                                     <-----                        --------->YAB1    --------->YAB1                               <-------------                       <---------YAB1     <---------ICU4                               --------------                 <----------DOF2         --------->ICU4                                --------------            --------->YAB1  <---------AHL20(2)       --------->YAB1                  ------->GAMYB  <---------ARR14(2)   <---------AHL20(2)<---------ATHB12    ------>MYB83          --------->At4g35610 xxxxxxxxxxx>smallRNA(l2)  --------->AHL20(2) <-----------GT1------>MYB46(1)       <---------At4g35610   agcaaatttgaaaatcatactttatattataaaatttttaaaaatcattaactattcatcaccaatctcttcacttcaagtcttcaactcccaaattagg  14985200                                                                                --------->WOX13(1)                                                                             --------->ARR14(2)                                                                             ------->TEIL                                                                             <---------ARR11(1)                                                                             <---------ARR14(2)                                                                            <---------CCA1(2)                                                                            <---------ARR14(1)                                                                          <---------ANAC58                                                                          --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                   <---------MYB52(1)                                                                  <---------LBD16     <----------DOF2                        --------->AHL20(1)    --------->LBD16    <---------DAG2                          --------->ARR11(3)   <---------ANAC58 <-----------GT1                            <---------ARR11(3)   <---------ANAC46       --------->AHL20(2) ----TOE1(3)                                <---------AHL20(1)   <---------ANAC58  --------->YAB1 ----TOE2(3)                            --------->YAB1           <---------ANAC55(1)  --------->AHL20(2) ----AG                       --------->MYB52(1)             ----------------------->TaNAC69(2) --->AGL3                  >>>>>>>>>>>>>>>>>LFY        ---------->DOF2    <---------ANAC46 --->AG            <---------YAB1      ----------->GT1--------->YAB1      <---------ANAC58   gtttaaccttttgtttgaattcttattctgcccaatggaaaatgaaaatattcgaatcaaagttgttccgtgggtttcgtatctatcaaaaaatatagag  14985300  Previous    Next  AGI:  At5g37665.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.2e-44 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element) Range:  from: 14979371    to: 14984763    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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