Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                                             --------                                                                                             --------       --------->YAB1                                                                        --------       <---------------AGL15                                                              ------>MYB46(1)       --------->TOE1(3)                                                                  ------>MYB83       --------->TOE2(3)                    <----------DOF2                              ----------->RAV1(1)       --------------->AGL15             --------->ARR11(3)                    --------->MYB46(3)     <---------At5g28300        --------->ANAC46                               --------->DEAR3(2) -->ZmHOX2a(1)                 --------->MYB46(3)                             ------->TEIL-------->P ----ICU4 --------->YAB1     ------->TEIL<---------ARR11(3)        <---------MYB52(2)   --------->AtMYB61 ->ARR14(2)              --------------->AtSPL8      --------->ANAC58 -------->P      ------->TEIL --ARR14(2)              <---------------AtSPL8      --------->ANAC58--------->MYB52(1)--------->MYB46(3)   ttacatttaccataaaaatcaacaaaacttgtacccacaacaacatctttatcaaacccaattctcaaaactaacccatgaaccgatgaaccaacacgaa  14943000                                        --------->ZAT14                                        <---------ZAT14                                        --------->ARR14(2) -->TEIL                                <---------ARR14(2) ---->GLK1(2)                      ---------->DOF2 ->ANAC58                    --------->MYB52(1)                               --------->LBD16 ->ANAC46                    ---------->DOF2  <-----------HVH21             <---------LBD16 ->ANAC58             --------->YAB1--------->DAG2 --------->AGP1     --------->YAB1                -   cctgtccattgttagaacaaactttcataaccaaaggaaaagtatactcatcaggtctagctaaacctgttctcatcatccgcattagaatcgaaacagt  14943100                                                                       ------->MYC2                                                          --------->LBD16                                                         --------->LBD16 <-------TEIL                                             <---------------------WRI1<-------MYC2                                            --------->LBD16<------ZmHOX2a(1)                                      -------->HAHB4    <-----------RAV1(2)                                     <---------ATHB12   <---------LBD16------->MYC3                           <----------DOF2 --------->HSFB2a(2)         <-------MYC3                 -                       <---------ZAT18<---------ICU4    <---------HSFB2a(2)                        <-                       --------->ZAT18--------->ATHB12  --------->HSFB2a(2)           --------------- --------->DOF2    --------------->AtSPL8  <---------HSFB2a(2)      <---------ALFIN1 <------ZmHOX2a(1)   ctcaaagaagagaaacttattcgagtaccctttaatcaaatgattccagagataagttccaggagaaggaacacgttcaaaaacagaggaagagtaagag  14943200                                                                           --------->ARR11(1)                                                                          <---------HSFB2a(1)                                                                          --------->ATHB12                                                                          <---------HSFC1(2)                                                                         <---------YAB1                                                                      --------->LBD16                                                                     <---------ANAC58                                             --------->GLK1(2)       <---------ANAC58          <---------------------WRI1      ----------->ARR10          <---------ANAC46        <----------ID1                <---------At4g35610           <---------LBD16 -------->CCA1(2)                     --------->At4g35610     --------->ARR11(3) ---------ID1             --------->CCA1(2) <---------GLK1(2) <---------ARR11(3) --------->ANAC81<----------ID1<---------YAB1<---------ARR14(2)  <----------DOF2                <----   agagacgaagaagacgaagaagacgaagagatgaagattgagatgagattctggtcttgttcaagacctttgcggatgattcgggcatggatttgattaa  14943300                                                                                    --------->ALFIN1                                                                           <---------HSFB2a(2)                                                                          <---------LBD16                                                                       --------->KAN4(2)                                                                      <---------HSFB2a(1)                                                                      --------->KAN4(1)          --------->GLK1(1)                                          <------ZmHOX2a(2)         --------->ARR14(2)                                          ================================         <---------GLK1(2)                                      <---------LBD16<------ZmHOX2a(2)         <---------ARR14(2)      <---------ANAC58  ===================================HOX2a_HOX2a     <---------LBD16             <---------ANAC46  <------ZmHOX2a(1)<---------ARR11(3)          <----  ------->TEIL                   <---------ANAC58  =========================HOX2a_HOX2a   <----------DOF2 -----TOE2(3)    --------->ARR11(3)         ---------->DOF2 --------->GLK1(2)  ======================   gatgaatctcggatttgcagagcttgaagagggtttcgagtgagagcaaagaaggatgagataatctctggatcattcgggatcaaatggggctattagg  14943400                                                                   <---------TOE1(3)                                                                   <---------TOE2(3)    <---------YAB1                                                ---------->DOF2 ==HOX2a_HOX2a                                       --------->ARR14(2)                       ------- --ZmHOX2a(1)                    --------->YAB1      <---------ARR14(2)           --------->GLK1(2) ==HOX2a_HOX2a             <----------DOF2 ------->TEIL  <---------YAB1       --------->YAB1  <------   aaacatatgtttgtatgtaaatttgtatgcttttgtcataacatgaatcttggtggattctaatttgttaaagttttcgatgagaatcgattttttgtag  14943500                                                                <---------YAB1                                                                <---------AHL20(2)                                                               <-----------TBP                                                          <---------TOE2(3)                                    <---------TOE2(3)     <---------TOE1(3)                                    <---------TOE1(3)--------->At4g35610                       ------                        <---------HSFB2a(2)          <---------At4g35610              ----------->GT1                    --------->TOE2(2)                <------NtERF2<------------CBF   <---------WOX13(1)         ---------->DOF2--------->HSFB2a(2)          <---------ZAT2                 <------------CBF -->HSFB2a(2)       --------->TOE2(3)                --------->ZAT2             <------------CBF ---HSFB2a(2)       --------->TOE1(2)         <---------At4g35610--------->ATHB12  --------->ATHB12   aagaattttgtaaaagatgaaaccttggagaagggtttaagggtttacagatggcagcttgaggtttttattgggttttcaaaattgattgttaattttg  14943600                                                                                        --------->LBD16                                                                                      <---------LBD16                                                                                     <xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                                  <-------TEIL                                                                              <-----------RAV1(1)                                                                          --------->AHL20(1)        <                                                                          --------->AHL20(2)       --                                                            ------------>CBF  xxxxxxxxxxxxxxxx>smallRNA(i)                      <------------CBF                     --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <------ZmHOX2a(1)                      --------->ANAC58<---------YAB1 xxxxxxxxxxx                  <---------TOE2(3)                        --------->ANAC46<---------AHL20(2) -------         ----------->GT1                                  ------->GAMYB   <---------AHL20(1) --------       <------------CBF     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------AHL20(2)--------- ----->GT1   <---------AHL20(2)                     ----------->GT1    --------->AHL20(2)xxxxxxxxxxxx   taaattcgagattgtttatttaggaattgacaaataccatttctctgtttgaaactgtaacacccaatttcaaaaatataatggtgcatgcggaaaggtt  14943700                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <---------ZAT18                                 <---------ZAT14                                 --------->ZAT14                                 --------->ZAT18                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            ---------->DOF2                          <---------YAB1  <----------DOF2                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               ------->GAMYB<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR11(3)                    <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-----------ARR10                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR11(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->AHL20(2) -------->DOF2--------->MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(s)     <---------GLK1(2)        <---------ANAC58 xxxxx>smallRNA(le3) <---------CCA1(2) --------->ARR11(3)  --------->LBD16  <---------AHL20(2) ---->GT1<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxx --->GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC58 >DAG2 --------->ATHB12 --------->YAB1<---------CCA1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxx   taaaagaattgatttaaccacctatatcatcaaagtgcacatatcttttcagttaaacatcccgatagaatttcagaattaaatgtgtttgggcttgagt  14943800                                               <---------ZAT14                                               --------->ZAT18                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                               --------->ZAT14                                               <---------ZAT18                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        ---------->ID1                   --------->LBD16 --------->ARR14(2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->HSFB2a(2) <xxxxxxxxxxxxxxxxsmallRNA(s)   <------ZmHOX2a(2)                  <---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  ----------->GT1                 <---------LBD16  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ALFIN1                --------->MYB52(1)<xxxxxxxxxxxxxxxxsmallRNA(i)      --------->ARR11(3)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ---------->DOF2<---------ARR11(3)     ----------        <---------ANAC46          xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxx       <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC58        xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AtLEC2         xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ANAC58       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxx>smallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---------->DOF2 <---------ANAC46 xxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ETT(1) ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<x   agttcaagatgggtgaacttccggaaaacaattgtcggaaccatgcgagtgaacccaaagtatggggaaagatcatgtggtgatttgtagttttggtaac  14943900  Previous    Next  AGI:  At5g37570.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G29230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15857.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 14941724    to: 14943376    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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