Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------DAG2      <----------DOF2                            --------->YAB1 -------->MYB52(1)            <---------ANAC58   --------->ATHB12 -------ARR10                 <---------ANAC58   <---------ICU4 -----ARR11(3)              <-----------GT1     --------->ICU4 ---->ARR11(3)         ---------->ID1    --------->TOE2(3)                           <----------DOF2 ---->GLK1(2)   <------------------------ANAC81 <---------ATHB12            ----------->GT1    <-----   tctaactgctttattttttgtttttgtttttttcttgttatattcttaaaatcattaagagaaaactttggaattgaatggcaaaaactttatattagag  14938800              <---------YAB1            --------->ATHB51            --------->ATHB12            -------->ATHB1           <---------AHL20(2)                                                                   <----           --------->AHL20(1)                                                              -------->HAHB4           <---------ATHB51                                                                --------->ATHB12           <---------YAB1                                                                  --------->YAB1           --------->ICU4                                                                 <---------ATHB12         <---------ICU4                                                                   --------->ICU4     --------->AHL20(2)                                                 <-----------RAV1(1)<---------ICU4 <---------TOE2(3)                 --------->TOE2(3)        ---------->DOF2               <---------YAB1 ----TOE2(3)<---------ICU4  <---------TOE2(3)              <---------AHL20(2)      ---------->DOF2   gtttagattaaaaattattgtagagagtttaagtttacatcaatgggtctgacttaaaaatttaaaggcttattttgttggataaaaaagaaatgattac  14938900                                                                       --------->ICU4                                                                     <---------------AGL15                                                                     --------------->AGL15                                                                     ================================                                                                   ------------>CBF                                                                ---------->DOF2                                                              <---------YAB1                                                             --------->TOE2(3)                                                            --------->ATHB12        <---------ARR11(3)                                                           <---------YAB1           --------->GLK1(2)                --------->DAG2                            --------->ARR11(3)        --------->ARR11(3)          ---------->DOF2                                 <---------ARR11(3)       --------->RVE1(1)   ----------->RAV1(1) <------------CBF   <----------DOF2--------->RVE1(1)  ----------->GT1         < -----ANAC55(2)---------->DOF2      <-----------GT1      --------->CCA1(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   atgaacaacaaaaaaagaaaagttagattgttcgaattttactactttagaaatcaaaaatatcattagagcaatatttagtaaaaaatctagtcaaaca  14939000                          --------->ANAC46                          --------->ANAC58                          --------->AtLEC2                          --------->ANAC55(1)                ------------>CBF             <-----------HVH21            --------->ANAC46            <---------ANAC55(2)                       <---------------AGL15                   -------           ------>ZmHOX2a(2)             <---------TOE2(3) ---------->DOF2                   <-------       <---------YAB1     --------->ANAC58    <-----------GT1                          --------->AHL20(2)     --------->YAB1   <-----------GT1<----------DOF2  <----------DOF2<------------CBF  <---------AHL20(2) =====================================================================MADS_MADS     <---------ARR11(3) -------TEIL--------->ANAC55(2) ----------->HVH21     --------------->AGL15         --------->ARR11(3)   tatacatttatgatccgtcacaatttacacgcaaatgaccttttagattaacctttcttttaaaagacgactattgtagttaatgagattttattttaca  14939100                                                 <---------AHL20(2)                                                --------->AHL20(2)                                           --------->HSFB2a(2)                 --------->YAB1                                           <---------HSFB2a(2)               --------->ARR11(3)                                    --------->ARR11(3)               --------->YAB1                --            =================================HOX2a_HOX2a             <---------ICU4      <-----------  ------------>CBF  ------>ZmHOX2a(1) ------>ZmHOX2a(2)             <---------ATHB12   <---------AHL20(2) <-----------GT1    =========================HOX2a_HOX2a            --------->ICU4     --------->AHL20(2) ----->CBF  ------>ZmHOX2a(1)       <---------ARR11(3)            --------->WOX13(1)  ----------->TBP ----GT1<-----------GT1 ----------->TBP<----------DOF2          ------------>CBF ----------->GT1   <-   atttctcaattctcctctcgtcctctatatatagactcgatctttctcgataaaatttggatattaaacaatcatggaaaatcatgttataaattgcatt  14939200                                   --------->CCA1(2)                         <---------ARR14(2)                                   <---------GLK1(1)                         --------->ARR14(2)           <-------GAMYB           --------->RVE1(1)                        --------->WOX13(1)          <---------MYB46(3)       --------->GLK1(1)                    <------MYB83          <---------DEAR3(2)      <---------ARR11(3)                    <------MYB46(1)          <---------SPL7          --------->ARR11(3)        --------->HSFB2a(1)       --------->TOE1(2)      ---------->DOF2               <---------HSFB2a(1) ------->HSFB2a(2)          --------->MYB46(3)       --------->ALFIN1 <--------P -CBF  <-----------HVH21--------->At5g28300       --------->DAG2   <---------TOE1(3)          ------- --------HSFB2a(2)   <---------LBD16            ---------->DOF2    <---------TOE2(3)<----------DOF2   tctaaaaaacgtcggatggattatgcggtaaccaaagatatcccaaatcgcaaaggtgagggaagttctaaggttggccaatccacctttgagacacaaa  14939300                                                 ----------->HVH21                                                --------->At5g28300                                               ----------->GT1                                              <---------DEAR3(1)                       <------MYB46(1)                                             <---------At4g35610    ---------->DOF2    <---------ANAC58                                        <------MYB83              --------->ANAC58     <---------ANAC58                                        <------MYB46(1)    <------NtERF2               <---------ANAC46      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->At4g35610  --------->ANAC58     <------MYB83 <---------ANAC46                       <---------ANAC46  ------>NtERF2               --------->MYB59 <---------ANAC58                      <---------MYB46(3) ----------->RAV1(1)   ---------->DOF2 <---------ANAC58                      --------->MYB46(2)--------->ETT(2)       ===================== --->DOF2                              <---------AtMYB61 ----------->HVH21    <---------YAB1   gttgtgtggataatgtagtctacaaattgtacttcaagggtttggtgagcggtgaaacggcgacagacaagaaagcgattgtgaaagttgggtttggagt  14939400                <------NtERF2              <---------ANAC46                                                   --------->GLK1(1)         =================================================bZIP_DOF  --------->LBD16         <---------bZIP60(2)                                       ------->GAMYB <---------RVE1(1)         <---------TGA1a                               <---------At4g35610      --------->ARR14(2)         --------->O2                                  <---------ZAT2           --------->ARR11(3)         <---------O2                                  --------->At4g35610      <---------ARR11(3)      <----------ID1                           <---------DAG2    <---------At5g28300         <-------      ----------->HVH21                        <----------DOF2  --------->MYB52(1) --------->GLK1(2)  --------->CCA1(2)                         <-----------GT1     <-----------GT1 <---------ARR14(2) <---------ARR14(2)                     <---------AHL20(2) <---------YAB1     ----------->ARR10 <---- --------->ARR14(2)                    --------->AHL20(2)----------->GT1 ---------->DOF2    --------- ==================bZIP_DOF        --------->ICU4     ------->TEIL--------->MYB46(3)     --------->ZAT6   cgcgatatgcgacgaggcggataacttattctatggaatgaataaatcactttatgaagctgtgattaaccgcgaagaagcagatattctagcactaatt  14939500                                                     --------->WRKY38(1)                                                     --------->WRKY12                                                  <---------ANAC46                                      <---------ANAC58                                      <---------ANAC58                 ------>MYB83                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->MYB52(1)                           <-------GAMYB     <-----------RAV1(1)     <---------MYB46(2)                          <---------ANAC46   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          ----------->GT1    <---------MYB46(3)   <-----------GT1 ----------->GT1       --------->ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(i) <---------MYB59 --------->YAB1 --ICU4            <---------At5g28300<---------ANAC46<---------WRKY18(1)   <---------MYB52(1) -------GT1       <-----------GT1     ----------->GT1----------->HVH21 ------>MYB46(1)     <--------- >ICU4     ------->TEIL<---------MYB52(1)--------->ATHB12 <-----------HVH21--------->At5g28300   actgggttatatgaatcaattcaccgtggggttaaaaatgtcgtgatttgttgcgatgaccgtcaaatttaccaaaccgtaagtttttcataactttgtt  14939600                                                            <---------AHL20(2)                     <-                                                         <---------ARR11(3)                        --                                                         <---------AHL20(1)                        --                                                         --------->ARR11(3)                       ---                                                         --------->AHL20(1)                       <--     ----------->GT1                                   <---------ARR11(3)                       -----  <----------DOF2                                      --------->AHL20(1)                    -------- -DOF2    <---------YAB1     <---------ZAT6            <---------AHL20(1)                <---------AtMYB61   atttctttggttatttttgtgaaaacaagtagtgctactctgacttagataatgcaaaatatttttttttggaatttgagtagtccaagttttggtagta  14939700  Previous    Next  AGI:  At5g37560.1    Description:  nucleic acid binding / zinc ion binding. similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G25370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21795.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867) Range:  from: 14939216    to: 14941020    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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