Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ZAT2                                                                              --------->At4g35610                                                                              <---------At4g35610                                                                            ------>ZmHOX2a(1)                                                                          ===========================HOX2a_HOX2a                                                                          ------>ZmHOX2a(2)                                                                         <---------YAB1                                                                        <---------ARR11(3)                                                   <---------ALFIN1     --------->ARR11(3)          <         *TSS       --------->HSFB2a(2)           --------->ZAT14     <---------YAB1                <        <---------At4g35610           ----------->RAV1(1)          ------->TEIL           <---------- -------At4g35610   <---------HSFB2a(2)   ---------->DOF2       <---------ATHB12     <---------AHL20(2) --YAB1 --------->At4g35610        <------ZmHOX2a(1)            <---------YAB1<---------ZAT2  ------>ZmHOX2a(1)   tgctgatttttgctgaataggtctagagggacaacaaggacaacaaaagtacaacactctagacctatgaatatgatcctagctgatttttttttcctag  14904300                                                                                              <------                                                                    <---------ANAC58          <------                                                                    <---------ANAC58          -------                                                                ---------->ID1                <------                                                            <----------DOF2                   <------          <---------AHL20(2)                               <---------ANAC58                   <------          --------->AHL20(2)                            <---------WOX13(1)                 ------>ZmHOX2a(1) <----------DOF2            --------->TOE2(3)        <---------AHL20(2)                   <---------ANAC58 ---------ANAC58          <-----------GT1          --------->ANAC55(2)                    <---------ANAC58 ---------ANAC58      <----------DOF2   <---------AHL20(2) <---------ANAC58      <---------ANAC58 -GT1<----------DOF2  <---------DAG2----------->GT1<---------ANAC55(2)           <---------ANAC58   -   ttgctttcttttttaatttcattacttttttcttaacacggtttaatttcattacttaattgctttgttgtcttgcccgtcttgcttaagttccttacgt  14904400                            <---------AHL20(2)                    ------>MYB46(1)         ------>MYB46(1)                 <---------AHL20(2)                    ------>MYB83            ------>MYB83            <-------TEIL                   -- ---ANAC58        ------->GAMYB           <---------MYB59        <------MYB46(1)                   <- ---ANAC46        <---------MYB59         --------->AtMYB61      <------MYB83                      -- -->ANAC55(2)     --------->AtMYB61       ------->GAMYB         --------->MYB59   <---------ARR14(2) ---ANAC55(1)    --------->MYB46(3)      --------->MYB46(3)     --------->MYB46(2)--------->ARR11(3)< ---ANAC55(2)   --------->ANAC58        --------->ANAC58        --------->MYB111(1)                -- ---ANAC58    --------->MYB46(3)        --------->ANAC58      <---------MYB52(1) <---------CCA1(2) -- --------->DOF2 --------->ANAC58      --------->MYB46(3) <----------DOF2<---------RVE1(1)          --   gtaaaagaacccaaaaacaaccaaactcattttttttaaaacaaccaaactcttatggtctttagttaggttcgatattttatatatctggtcagtataa  14904500              <-----------GT1          --------->KAN4(2)         --------->KAN4(1)         <---------HSFC1(2)         --------->HSFC1(2)         <---------HSFB2a(1)         --------->HSFB2a(1)         <---------KAN4(1)        <---------KAN4(2)  --------->MYB52(1) ------->ANAC55(2)                               --------->LBD16         --------->ARR11(3) --------ANAC55(2)                              <---------ANAC58         <---------ARR11(3) ------->ANAC58                      ---------->DOF2                     <---------AHL20(2) ---------MYB52(2)         <-----------GT1      <---------LBD16          <---------AHL20(1)         < ------->ANAC55(1)    --------->AHL20(2)        <---------ANAC58         --------->AHL20(1)      ---- ------->ANAC58       <---------AHL20(2)        <---------ANAC46         --------->AHL20(2)   <------ ------->ANAC46-------->P --------->AHL20(2)   <---------LBD16<-----------HVH21  ----------->GT1 ----   caagtaacagaacattctaccagtttaattaacttgtacaaaagtattttgcgggataaaactccatcacatcaatatattcagagtaaattgacacatt  14904600                                                                              <-----------GT1                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)                                                                          <---------ICU4                                                                          --------->YAB1                                                                          <--------ATHB1                                                                          --------->ATHB51                                                                          <--------HAHB4           --                                                                         --------->AHL20(2)       <--                             <---------GLK1(2)                           <---------ATHB51         ---     <----------DOF2 <------------CBF                                    --------->ICU4      -------- -----------GT1    <---------AHL20(2)                                    <---------ATHB12    -------- ----->YAB1        --------->AHL20(2)                                ------------>CBF      -------->P ---GLK1(2)        --------->AHL20(1)       <------------CBF       <---------ZAT18        --------->MYB52(1) ----->TOE2(3)    --------->AHL20(2)<----------DOF2                --------->ZAT18      <---------MYB52(2)   cttaacccttttacaaaaaaaaaaattgacacattcttctttgtaacattgacaaaaactgagatttagtccacaataattaactacagaactaacctca  14904700         --------->At4g35610        *TSS        --------->MYB52(1)                                                                       <---      <---------ATHB12      <---------ANAC58                                                    <---- ----->GAMYB        <----------DOF2                                    --------->ANAC46        <----- -------MYB52(2) <---------ARR11(3)                                   ------>MYB46(1)          ------ ------>MYB46(3) --------->ARR11(3)        ----------->GT1            ------>MYB83          ------>MYB46(1) ->TOE2(3)   ---------->DOF2<---------ANAC46                         ----------->RAV1(1)    ------>MYB83 ->TOE1(3) ------->GAMYB    <---------ANAC58         <-----------GT1--------->AtMYB61     <---------MYB59   acgaactaatcaactgaaagttcttttattccttgaaaaattcaatggtcaaaagtttccagtccctagaccaacacaacttgcaaattagacctaatta  14904800                                                                                                   --                                                                                            ------->GAMYB     ------>ZmHOX2a(1)                                                       <---------AHL20(2)    --    --------->TOE2(3)                                                       --------->AHL20(1)   <---  ------>MYB46(1)                                                           <---------AHL20(1)   ----  ------>MYB83                      --------->MYB46(3)                      --------->AHL20(2)   ---- --------GT1                       ------>MYB46(1)                         --------->YAB1 -------->P -------GT1                        ------>MYB83                        <---------AHL20(2) >>>>>>>>>MYB98 ----AHL20(2)              <---------ICU4                              --------->AHL20(2) ------>MYB46(1) --->AHL20(2)  <----------DOF2    ----------->RAV1(1)              <---------ANAC55(2)    ------>MYB83   aaccttcctcattctctcttttcccctaattttgaccaacaaatattgacttagaaaaaaaaaaccattacatataaatataatctcatcccaacccaaa  14904900                                ------->GAMYB                               --------->MYB46(3)                             --------->WOX13(1)                            <---------WRKY12          --------->ANAC58 --------->DOF5.7(2)                                                   ----          --------->ANAC58<-----------HVH21                                                    ------ ------->TOE2(3)         --------->bZIP60(1)                                                  <------ZmHOX2a(2) ------->TOE1(3)         --------->O2     --------->DAG2                                      ------- ------ARR11(3)          <---------O2    ---------->DOF2                                     <------- ----->ARR11(3)          <---------bZIP60(1)  <-----------GT1 <-----------GT1                -------- ----->GLK1(2)    <---------YAB1--------->AtMYB61  <---------YAB1     --------->TOE2(2)      --------   atcttaaaacccaagtcaatactattgacgtcaaccaaaacaaaaaagtcactatttttgcattttacaaaacatgggttttttatggagaacgagatct  14905000                                            --------->LBD16                                          <---------LBD16                                        <---------ARR14(2)                                        --------->ARR14(2)                                     --------->YAB1 ----->MYB52(1)                  <------NtERF2 >ZmHOX2a(2)                    --------->LBD16 -->CCA1(2)                    --------->RAP2.6(2) --ARR11(3)      --------->LBD16<------NtERF2 ->AGP1  <---------ARR11(3)   <---------LBD16  <-----------HVH21    --------->LBD16 ->ARR11(3)    <---------LBD16----------------->AGL1              <---------LBD16   aacgagaagaagataactccggttttgagttggccggaatcagaaccggagtcagagataacaattccaccggagtttcaatgtccaatctcgatcgatc  14905100                --------->YAB1                <---------ICU4               --------->ICU4             --------->YAB1          ----------->GT1       <------ZmHOX2a(2)       --------->CCA1(2)      --------->ARR11(3)         <---------ANAC58                         ----------->RAV1(1)      <<      --------->ARR14(2)         <---------ANAC58                      --------->ANAC58          ----      <---------ARR14(2)  --------->ANAC58                             --------->ANAC46      --------      <---------ARR11(3)  --------->ANAC58                             --------->ANAC58      --------      --------->AGP1     ------->GAMYB         --------->ANAC58<------ZmHOX2a(2)             <-------  ---------->DOF2  --------->TOE2(3)           --------->ANAC58<-----------------AGL1    <-----------HVH21   taatgaaagatccagtaataatctcaacaggcattacttacgaccgcgtaagcatcgaaacatggatcaattcaggcaacaaaacatgtccagtcacgaa  14905200  Previous    Next  AGI:  At5g37485.1    Description:  other RNA Range:  from: 14903423    to: 14904209    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g37490.1    Description:  U-box domain-containing protein. similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G66160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42397.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 14904708    to: 14906381    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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