Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             <-------                                 <-------TEIL                                               <--------                   <----------DOF2        ---------->DOF2                  --------->REM1(1)---------           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               ---------->DOF2      <---------AHL20(2)   tttgtacagaattagagacttctttataactaagtttcatgttcaaaagagagtaaggcaagagggaaagaagacttacatcatatttaagtggaatatc  14866600        <---------ANAC58        <---------ANAC58 -------->ATHB12 --->ZmHOX2a(1) --------DOF2 ----->TOE2(3) -->ARR14(2)                             <---------ARR14(2) ---ARR14(2)                  <---------ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->ARR11(3)                 --------->ICU4 --------------->AGL15 ---ARR11(3)             <---------RAP2.6(3)<----------DOF2   --------->At4g35610 --KAN4(1)               --------->LBD16 --------->ARR14(2) --------->DAG2 ->KAN4(1)               --------->At5g28300<---------------AGL15 ->HSFB2a(1)            --------->RAP2.6(2)<-----------------AGL1                  --------->CCA1(2) --GLK1(1)              <---------ANAC46<---------MYB52(1)  <xxxxxxxxxxxxxxxxsmallRNA(i) ->GLK1(1)              <---------ANAC55(2)----------------->AGL3                 --------->ARR14(2) --HSFB2a(1)            --------->ANAC55(2)<-----------------AGL3   --------->MYB46(3)           ---- -KAN4(2)               ----------->GT1--------->LBD16     ---------->DOF2        <---------ARR14(2) ->TaMYB80       --------->ALFIN1    <---------LBD16<------ZmHOX2a(1)       <----------DOF2  xxxxxxxx   ctttattgaagcttgggaagtggatgccgtaatattcactccggttcttttataggaaccaaaaagctgaaccatcttctttcagatatgagccaagttt  14866700                                                                             <--------ATHB1                                                                             --------->YAB1                                                                             <------------ATHB5                                                                             --------->ATHB51                                                                 <---------------AtSPL8                                                      <---------ANAC58       --------->ATHB12                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                      <---------ANAC58       <---------ICU4                                                   <-----------GT1           -------->ATHB1                            --------->YAB1        <---------GLK1(1)         <---------ATHB51                            <-----------GT1       --------->GLK1(1)         --------->ICU4                           <---------YAB1        --------->ARR14(2)         <---------ATHB12                         --------->YAB1          ---------->TaMYB80         <---------YAB1                        <---------YAB1           <---------ARR14(2)       --------->YAB1                       --------->AHL20(2) <---------GLK1(1)      <---------------AtSPL3                    --------->YAB1    <---------HSFC1(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->HSFC1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ---- ----->ATHB12  <------ZmHOX2a(2)      <---------HSFB2a(2)      <------ZmHOX2a(2)      <---------GLK1(2) xxxxxxxxxxxxxxx>smallRNA(fl3)        --------->HSFB2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---   gatttgatggtttatggatcaagaatattataacaatattctagaaatgcgaatttccgtctcggatcaagtactacaataattgcaagaatgtcgctaa  14866800                                                                                          xxxxxxxxxxx                                                                ---------->DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <---------ATHB12    <xxxxxxxxxxxxxxxxxxxxxx                   <---------ARR11(3)                   ------>ZmHOX2a(1)    ------>ZmHOX2a(2)              --------->YAB1                            ============================HOX2a_HOX2a             <---------YAB1       ------>ZmHOX2a(1)--------->YAB1          --------->ARR11(3)         <---------ANAC55(2)  --------->ARR14(2)   --------->KAN4(2)       <---------ARR11(3)xxxxxxxx         --------->ANAC55(2)  <---------ARR14(2)  <---------KAN4(1)      <---------YAB1  xxxxxxxxxxxx        <---------ICU4       <---------CCA1(2)    --------->KAN4(1)   xxxxxxxxxxxxxxxx>smallRNA(i)<--    ------>ZmHOX2a(1)    <-----------HVH21       <---------KAN4(2)   <-----------TGA1xxxxxxxxxxxxxxxx ----->ARR11(3)    --------->ARR11(3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx ------ARR11(3)   <---------CCA1(2)         <-----------GT1--------->ZAT6--------->ICU4  xxxxxxxxxxxx   atcttcctaatacttatcatatatctcggtcatatcctctaccattttacgaataatcctatcactaaaagcgtcatgatctcttagccagtatttagtc  14866900  <---------ALFIN1  --------->REM1(1) <---------ZAT14     <---------MYB46(3) xxxxxxxxxxxx>smallRNA(fl3) xsmallRNA(fl3)  <---------YAB1                                                 <-----------HVH21 xxxxxxxxxxxxxx>smallRNA(i2)                                          <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxx>smallRNA(fl3)                                        --------->MYB52(1) ----NtERF2--------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxx>smallRNA(fl3)  --------->ATHB12                       <---------At4g35610 xxxxxxxx>smallRNA(fl3)<---------YAB1                ----------->GT1 ----------->GT1 xxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->At4g35610         xxxxxxxxxx   gcctacacttgcataaaatatgtttgttattggataaacgaactagaaataagttttgtaatttcagcaaacggtttcaagaagtcacatataaacagtg  14867000                       ----------->RAV1(1)                     ------>MYB46(1)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     ------>MYB83                    --------->ANAC46                  ----------->RAV1(2)                  =================RAV                  --------->At4g35610                  <---------At4g35610                <-----------GT1                                                 --------->AHL20(2)             ------>MYB83                      <---------At4g35610              <---------AHL20(2)             ------>MYB46(1)              ------>ZmHOX2a(1)             --------->ICU4      ---------           <---------MYB46(2)      --------->AHL20(2)           <---------ARR11(3)      --------->ARR14(2)           <---------MYB59    <---------ARR11(3)                --------->AHL20(1)      --------->ARR11(3)           <---------MYB111(1)--------->ARR11(3)            --------------->AGL15       <---------ARR14(2)          --------->ANAC55(2) --------->AHL20(1) --------->GLK1(2)      <---------ATHB51<---------ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <----------DOF2   <---------------AGL15  ------------>CBF-- *TSS------->TEIL --------->ZAT2   <---------AHL20(2)      ------------>CBF<---------YAB1  <xxxxxxxxx xxxxxxxxxxxxx>smallRNA(fl3)  <---------AHL20(1)<---------GLK1(2)--------->CCA1(2)<-----------GT1  <-   tctaatgaactcacctaatcacctgccacaaatatttttaaatcctttcagattccattctaccaatatatgaaattatgaattaaacaatatctgctaa  14867100               --------->YAB1              <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               --------->TOE2(3)        --------->At4g35610                --------->AHL20(2)        ----------->RAV1(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------At4g35610     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <-----------HVH21         xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <xxx   --------->ANAC46         <---------ARR11(3)    --------->MYB46(3)                            ----- ---------->DOF2       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------ANAC55(2)                ------- >At4g35610    <---------ICU4<------ZmHOX2a(2)   ------->TEIL                                 <------ ------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->At4g35610                <------ xxxxxxxxxxxxxxsmallRNA(fl3)--------->ARR11(3)   >>>>>>>>>>>>>>>>>LFY                        <xxxxxxx --------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <-----------HVH21              <xxxxxxxxxxxxxx   attaaaagtcacctgaataatggcacaatagatcatatggcacaataaatgaaccattgtcacctaaactcttaaaacttcccagtttatgtagtctgca  14867200      ------>MYB46(1)      ------>MYB83    <---------MYB59 <-----------GT1 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>GT1                                             <-----------GT1 -->ZAT14                                         --------->ANAC58                                 -- ---At4g35610                                 --------->ANAC58                       <-----------GT1 ---ZAT14           ----------->RAV1(1)     ---------->DOF2                         <---------AHL20(2) xxxxxxxxxsmallRNA(i)             ----------->GT1 --------->ANAC58                 <---------AHL20(2) xxxxxxxxxsmallRNA(i2)         ---------->DOF2--------->ANAC58                     --------->AHL20(2)   gttaaaccaaactataccaaaacaacattgatcaaaagataaaaatcaaagcaagaatttaccaaaacaaatatgaaattctcaatttaatcttctaatg  14867300                                                             --------------->AtSPL3                                                            <---------At5g28300               ----------->GT1                    --------->ARR11(3)          <---------AHL20(2)                      <---------GLK1(2)          --------->AHL20(2)                      <---------ARR14(2)     --------->AHL20(2)                           --------->ARR14(2)     <---------AHL20(1)                           <---------ARR11(3)     --------->AHL20(1)                         ----------->ARR10     <---------ARR11(3)                      --------->ALFIN1--------------->AtSPL8   <---------ATHB12 ---->NtERF2 ---------->DOF2             ---------->DOF2   <-----------GT1     <----------ID1   cctccaaaatattaaaaaagaaaatcgaactaaatttgaacttcaaagtgtagattttcaattaccgtacttacatagaaaatgacaaatcaaacaagac  14867400                     --------->ATHB12                     --------->YAB1                     <---------ICU4                    <---------YAB1                    --------->ICU4               --------->bZIP60(2)               --------->ANAC58                          ------->TEIL               --------->ANAC46                     --------->At4g35610               --------->ANAC58                     --------->ZAT2              --------->At4g35610          <---------ARR14(2)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------->DOF2          --------->ARR14(2)               ----------->GT1    --------->ATHB12  <---------At4g35610   tcaagttgaacaaatccacgttatgattacaaaacaaaatataagttgtatataagctggaccttgattaagggcgagagttggctgaaaaagagtctat  14867500  Previous    Next  AGI:  At5g37442.1    Description:  transposable element gene. hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-44 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana) Range:  from: 14866147    to: 14867001    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version