Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->LBD16          <---------ANAC55(2)          --------->ANAC55(2)                                            <---------ANAC58       <---------MYB52(1)                                                <---------ANAC58    --------->SPL7                                            ----------->RAV1(2)   <---------MYB52(1)                                         --------->At4g35610  <---------SPL7   ----------->HVH21                   <----------CDC5<----------DOF2  <-----------HVH21----------->TGA1              ---------->DOF2----------->HVH21             <------   tctccgtccggtccgtaatagatgacgcaggcttcgatatcacagagtatgcaaagctctgagcctctgaagctttcttgaagatggtctcaagtctatt  14857100                                          --------->GLK1(1)                     --------->ARR14(2)                                        <------ZmHOX2a(1)                       <---------ARR14(2)                                      <---------TOE2(3)             <---------AHL20(2)                                 <------MYB46(1)                  <-----------TBP        <---------MYB46(3)        --------->HSFB2a(2)      <------MYB83                   <---------AHL20(2)      <----------DOF2        <---------HSFB2a(2) <---------ZAT6<---------GLK1(1)    --------->AHL20(1)      <---------ANAC58 ------CBF      ----------->GT1 --------->MYB59                <---------AHL20(1)      <---------ANAC58   gctcaaacttgtagaagcgagtgaatttgagagttaggtttaggaaacccttaagacatatcatatatatttatagactttggatttgggcttgttgggc  14857200                                                                   <---------MYB52(1)                                                         --------->AHL20(2)                                                         <---------AHL20(2)--------->LBD16                                         <---------RVE1(1)        <-------GAMYB                                         <---------CCA1(1)<---------AHL20(1)                                         --------->GLK1(1)--------->AHL20(2)                                        --------->ARR14(2)--------->AHL20(1)                      ---                                        <---------ARR14(2)<---------AHL20(2)                   ------                             ------------>CBF        <---------AHL20(2)  <---------LBD16       ------                        --------->AHL20(2)        ----------->GT1----------->GT1      ----------->GT1   caacttatactatgggctagtcccaaataaaaacaatgttcggatatttttggagttaattaaatttcggttaattccggtttatagtttgttaaaccct  14857300                                                                                         <---------HSFB2a(1)                                                                                         --------->HSFC1(2)                                                                                         --------->HSFB2a(1)                                                                                         <---------HSFC1(2)                                                                                        ------->TEIL                                                                                        <---------ARR11(1)                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                                                                                        <-----------ARR10                                               --------->GLK1(2)                       <---------ARR14(1)                                               --------->ARR14(2)                      <---------CCA1(2)                                               <---------ARR14(2)             <---------HSFC1(2)                                      <---------LBD16   --------->TOE1(2)     --------->HSFC1(2)                                      --------->HSFB2a(2)--------->LBD16      <---------HSFB2a(1)                                <---------ARR11(3)   --------->GLK1(2)        --------->HSFB2a(1)                    --------->MYB52(1)<---------HSFB2a(2)------>ZmHOX2a(1)   <---------KAN4(2)           <---------LBD16---------->DOF2     --------->RVE1(1)   ------------>CBF ------------------ ------->DOF2--------->LBD16    --------->ARR11(3)   <---------ARR11(1)      --------->ARR14(2)    -- --->TOE1(3)--------->HSFB2a(2)--------->GLK1(1)     --------->ARR14(2)      --------->GLK1(2) ------ --->TOE2(3)<---------HSFB2a(2)<---------GLK1(1)     <---------ARR14(2)    <------ZmHOX2a(1)  <------   taaacccatcttctccagaacaaaaccgaaaagaaatcttctcggaaaaaatccgaatcctgagaaatcgcaatggaggaatcttcttcgaatcttccgt  14857400                            ------->GAMYB                            --------->TOE2(2)                            --------->TOE1(2)                           --------->DEAR3(2)                           <---------MYB55(2)                           --------->MYB46(3)                           <---------MYB52(2)                                                       <                          -------->P                                                              <--                          ------>MYB46(1)                                                         <--                          ------>MYB83                                                            <--                          --------->ANAC46                                                        ---                          --------->ANAC58                                                        <--                          --------->ANAC58                                                      -----                     <---------ARR14(2)                                                        <----- --->WRI1     <---------ANAC58------>MYB46(1)                                                 <------ -------->DOF2<---------ANAC58------>MYB83                  <----------DOF2                   ------- --->LBD16  --------->GLK1(2)--------->MYB52(1)             <---------DAG2                ---------->DOF2 ---ANAC46 <---------GLK1(2)--------->AtMYB61    <----------DOF2     <-----------HVH21  <---------YAB1   cgaaagcgagagagattcttgtgaatccaaccaacgaagaaatagcgatgactttgaatcaacttttcatgcgtcaagactctcaacaatatcaaagatc  14857500       <-----------GT1    --------------->AtSPL8    <---------------AtSPL8 <---------ARR14(2) --------->ARR14(2) ---------CCA1(2) -------ANAC58 -------ANAC55(2) -------ANAC58 ------>ANAC55(2)        --------->YAB1           --------->ANAC58              ------------>CBF  <-- -------ANAC46 <---------LBD16                    --------->ANAC58          <<<<<<<<<TBF1       ----- ->ZmHOX2a(2)<---------ARR11(3)              ------->GAMYB            <---------ATHB12          <---- -ZmHOX2a(2) <---------ARR14(2)         ------>ZmHOX2a(1)            ------>MYB46(1)            <---- ---ARR11(3) --------->ARR11(3)        --------->TOE2(3)             ------>MYB83      <---------ANAC58 -->ARR11(3) --------->ARR14(2)        --------->TOE1(3)          ------------>CBF     <---------ANAC58   gcgtattttgtacaatatctgggtctctcataacccatcttccttaaccctcaagcttcttatggtctaccaatcttcttcttccaatagcgttctcaga  14857600         --------->WOX13(1)     --------->WOX13(1)   ------------>CBF   <------ZmHOX2a(2)  --------->AGP1 --------->At4g35610 <---------At4g35610           --------->MYB46(3)                                                ---- -----TEIL                   --------->MYB52(1)                                                 <---- ---->ARR14(2)            --------->TOE1(3)                                                    <----- -----ARR14(2)            --------->TOE2(3)                                ---------->DOF2     <----- -----GLK1(2)          <---------ALFIN1                           <----------DOF2    <---------YAB1--   ttcagatcaatctatcaactctcccaaaccctaaccgatgtcaagttcaaaccctctctcgactctctctttgaaatcaaaggggttttgattccatgct  14857700                                   --------->TOE2(3)                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                --------->ARR14(2)          <---------ANAC58                                <---------ARR11(3)          <---------ANAC58                                --------->ARR14(3)         --------->At4g35610          --------->CCA1(2)     <---------ARR14(3)         <---------At4g35610         <---------ARR11(3)     --------->ARR11(3)       <--------P         --------->ARR11(3)     <---------GLK1(2)  <---------ANAC46     ---------->DOF2            <---------ARR14(2) <---------ANAC58                   --------->ANAC58 ------->HVH21      --------->At4g35610            <---------ANAC58   <---------REM1(1) -----WOX13(1)     <---------ARR14(2)         <---------ANAC58     <-----------RAV1(1)--------->ANAC58 ----ANAC58        --------->ARR14(2)         <---------ANAC58 ------------>CBF     ---------->DOF2 ----ANAC58        --------->GLK1(2)------>ZmHOX2a(1)  <---------ANAC58    <-----------RAV1(1)      - ---------->CBF   <---------GLK1(2)--------->TOE1(3)   <---------ANAC58    <---------ZAT6      <-----   tgacaatgaaagataccaaagaatctgacttcaagatccttagaaaaatcgtgtcttgggtagcttacaatgttgtagtgttgcataaaagcaaatttca  14857800                      <---------ANAC58                      <---------ANAC58              <---------AtLEC2        <------------CBF                <-----------HVH21 -------->ZAT2  --------->ARR11(3)  --------->GLK1(2)                         --------->ZAT14 ------GT1----------->GT1    ---------->DOF2    <----------DOF2         ------>NtERF2         -------   cgagcttagcgattgtataatcttgctcgcagaaagagaacctgtcaaggcttttcatgtcttcatcgatttgccaccagtttacaatgagtttattgat  14857900                                                                    <---------ANAC58               >>                                   <---------ANAC58                 <---------ANAC58               >>                                   <---------ANAC58                <---------ZAT2                  >>                                   <---------ANAC46   <---------At4g35610                          >>                        <---------ZAT2 <---------ANAC58            --------->ZAT2                  -- <---------MYB46(3)     --------->ZAT2 <---------ANAC58    <---------YAB1                 <---------AHL20(2) --------->MYB111(2)    <---------At4g35610           --------->At4g35610             ----------->GT1 -->YAB1                --------->At4g35610  <---------ZAT18--------->ATHB12       <----------DOF2 <-   aagttgttggagacgattttacagagagctgagagtgtcttgcttagtccagttagagctgaagattggagcttggcatttcaaacttttgttaaaatgt  14858000  Previous    Next  AGI:  At5g37415.1    Description:  transcription factor. similar to AGL81/EMB3008 (EMBRYO DEFECTIVE 3008), transcription factor [Arabidopsis thaliana] (TAIR:AT5G39750.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 14856277    to: 14857531    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g37420.1    Description:  AGL105; transcription factor. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37410.1); contains InterPro domain Protein of unknown function DUF577 (InterPro:IPR007598) Range:  from: 14857373    to: 14859300    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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