Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   <-   <---------MYB46(2)         <---------WOX13(1)     <xxxxxxxxxxxxxxxxsmallRNA(se3)              ----   <---------MYB111(2)     ------>ZmHOX2a(1)   <-----------GT1                              ---------   cattaactacctagttgtactacttgttcctgaatgaccattcacaaatttacgacctagttgtactacttgttttatctgaagcaccattcacaaatcc  14850700 -------->ATHB12 --------HAHB4                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              < -------->YAB1                ------->TEIL       ------->GAMYB  <---------MYB59           --------->MYB46(3) ---------ICU4        ------>ZmHOX2a(1)         <------------MYB.PH3(1)       <---------ICU4  ------- --------ATHB12      --------->TOE2(3)        <-----------GT1<---------CCA1(2)--------->YAB1--------- ----->WOX13(1)   --------->ARR11(3)          --------->MYB52(1)--------->TOE2(3)<---------ICU4     - >GLK1(1)         <---------ARR11(3)     --------->AHL20(2)--------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   aatcatttaccaatgcataatatcctaaaacgagcctaatccaaaaaataacggtcttctctcataccttatttgctccatcatcatgttgaacaactgc  14850800                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                 <----------DOF2                                     <---------------                              <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxx                           --------->GLK1(2)                                      xxxxxxxxxxxxxxxxxxx                           --------->ARR14(2)      --------->TOE2(3)        <-------GAMYB      <-----                          <---------GLK1(2)       ------>ZmHOX2a(2)       <---------ANAC46     <-----                   <---------ZAT14               <------ZmHOX2a(2)        <---------ANAC58    <------          ------>ZmHOX2a(1)<---------ARR14(2)   --------->ARR11(3)        <---------ANAC58    <------     <---------ANAC58   --------->ANAC58        <---------ARR14(2)       <------NtERF2<xxxxxxxxxxxxxx     <---------ANAC58   --------->ANAC58        --------->ARR14(2)      ------>NtERF2----------------  <---------MYB52(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------DEAR3(1)     ------- ---------MYB46(3) --------->ZAT14              <---------ARR11(3)     --------->DEAR3(1) --------->ARR14(2) >GAMYB------>NtERF2  xxxxxxxxxxxxxxxx>smallRNA(s)----------->GT1      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >At4g35610        --------->ZAT18          ---------->DOF2           --------->ATERF1(1) <---------ARR14(2) -------->MYB52(2) <---------ZAT18        ----------->HVH21         ----------->HVH21----------------   attcgttgcctcctcttcttctgcacaagaatcggcatttgggtctgaaagatcgtcaattgaatcccatgcgacggcgtttgaattacccaaatcggcg  14850900      --------->MYB46(3)  <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------NtERF2 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----------HVH21 ----------TGA1 ---->NtERF2<-------GAMYB ------>O2  <---------MYB52(1)                                                                    <xx ------>bZIP60(1)                                                                              <----- -------bZIP60(1)                                                                            <------NtERF2 ------>bZIP60(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   -------- ----->ATERF1(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     -------- ---NtERF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            <------- ----->RAP2.3(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    ------>NtERF2 ----->RRTF1(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <-------- -----RAP2.6(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <-------- -----RRTF1(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       <-------- ->NtERF2  <---------DEAR3(2)                                                               <-------- -----ATERF1(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <-------- -----DEAR4(2)--------->MYB55(2)                                                            <-------- -----ORA47(2)xxxxxxxxxxxxxxxx>smallRNA(i)                                                  <-------- -----RAP2.3(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <---------RAP2.6(2) -----ERF1<---------DEAR3(1)                                                               <---------DEAR3(1) ----RAP2.3(3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       --------->ATERF1(2) --->DEAR3(1) <---------REM1(1)                                                            <---------RRTF1(3) xxxxxxxxxsmallRNA(le3)         ------>NtERF2                                              <---------RAP2.3(2) xxxxxxxxxsmallRNA(s2)        <---------LBD16                                              <---------ATERF1(2) xxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------RRTF1(2) --AGL1   xxxxxxxxxxxxxxxx>smallRNA(i)                                                     --------->DEAR3(1) xxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  --------->ATERF1(1) xxxx>smallRNA(fl3)--------->At4g35610 ------>ZmHOX2a(1)      ------>NtERF2               <---------ABI4(1) ----RAP2.3(2)<---------MYB46(3)--------->LBD16<---------MYB46(3)                         <------NtERF2 ----DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->ANAC58            <xxxxxxxxxxx ---LBD16<---------LBD16    <-----------GT1  <-------GAMYB   --------->ANAC58           <---------DEAR3(1) ---ABI4(1)<---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <---------ARR14(2) xxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC46       --------->GLK1(2) ->AG<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <-----------RAV1(1)         <---------CCA1(2)<xxxxxxxxxxx -->ATERF1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ALFIN1    <---------LBD16<------ ->AGL1------->GAMYB<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-----------ARR10   <----------DOF2<---------RAP2.3(3)   gcgtcacaatcgccggttgtaggctgaatttctccggcttcctcttctgttgttagaagctctacgccttcttcatctctttggggaatctcggcggcgg  14851000         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       ----------->HVH21 xxxxxxxxxxxxxxsmallRNA(i) ----DEAR3(2)                                                                                       < ->ATERF1(1)                                                                                        - ->At4g35610                                                                                      --- --At4g35610                                                                                     <--- -RAP2.3(1)                                                                                      <--- -ATERF1(1)                                                <---------At4g35610            --------->AHL20(1) -RAP2.6(1)                                              <-----------RAV1(2)              <---------AHL20(1) -RRTF1(1)                                         <---------ARR14(2)                     --------->AHL20(2) -ORA47(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------AHL20(2) -ERF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------GLK1(2)         >>>>>>>>>>>>>>>>>LFY<--- -DEAR4(2)                           ------->GAMYB --------->ARR14(2)   --------->ZAT6   <---------AHL20(2) xxxxxsmallRNA(s)         <-----------HVH21     --------->YAB1     <----------DOF2     <xxxxxxxxxxxxx xxxxxsmallRNA(i)        <---------DEAR3(2)    <-------TEIL--------->At4g35610 --------->ATHB12 <---- ---DEAR3(1)   <------ZmHOX2a(1)     --------->TOE2(3)<-----------GT1 <-----------GT1*TSS--------->AHL20(2)   tctcttcgactgatggaggaatttcgccggtcacttcaaccctagttgattcatattctccagatgagtcttttactctatccattggaaaataaatttg  14851100                                                                                    <------NtERF2         <----------ID1                                                           <---------DEAR3(1)     ---------->DOF2                                                           <---------bZIP60(1)   <---------YAB1                                                              <---------ANAC58 --------->GLK1(1)                                                             <---------ANAC58 --------->CCA1(2)                                                             <---------ANAC46 ---------ARR14(2)                                               --------->LBD16 <------NtERF2 -------->ARR14(2)                                               ----------->GT1<-----------HVH21 ------>LBD16                                                  <---------LBD16 <---------O2 ------ANAC58             --------->MYB52(1)                 <-----------GT1   --------->bZIP60(1) ------ANAC46         --------->ANAC58                <---------WOX13(1)      <------NtERF2 ------ANAC58         --------->ANAC58               <------------CBF  <------------CBF xxxxxxxsmallRNA(l2)--------->MYB52(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------O2 -----LBD16  ---------->DOF2        ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------TGA1a   cggatatgaaagagacaaagacgaacgaaaacggagaagaaagaagaagagaagagattgatttttccggtgaaattggtgtcgtcggagacgagagaag  14851200                                                                                               xxxxxx                                                                                            xxxxxxxxx                                                                                         <xxxxxxxxxxx                                     --------->DAG2                                     --------->AHL20(2)                                    --------->DAG2                <-----------GT1      <---------AHL20(2)                                   ---------->DOF2         <---------TOE1(2)          xxxxxxxxxxxxxxx                         --------->HSFB2a(2)               <---------TOE2(3)       xxxxxxxxxxxxxxxxxx                <------ZmHOX2a(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           --------->At5g28300  ------>NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------TOE2(2)     ----------->GT1 --------->DEAR3(1)      <---------HSFB2a(2)          <-----------GT1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   acgacgacggagagaagaggaagaagtcgagaagttgaaaaggggaagaacattttttacttaggttttttctgtagtttctagggtaaataatataact  14851300                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->ATHB12                 <---------AHL20(2)         <-----------GT1                                     <---------ANAC58         <---------AHL20(2)                                  <---------ANAC58     <---------ANAC58      <---------ICU4                                        xxxxxxxxxxxxxxxx>smallRNA(i)    --------->ARR14(2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ------>ZmHOX2a(1)    <---------ARR14(2)     <---------MYB59          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->TOE2(3) xxxxxxxxxxxxxxxxx>smallRNA(le3)                  <---------ANAC58                <---------ANAC58 xxxxxxxxxxxxxx>smallRNA(le3)                     <---------ANAC46<---------ARR14(2)   ------>ZmHOX2a(1) xxxxxsmallRNA(i)<---------YAB1                   <---------ANAC58--------->ARR14(2)   <----------DOF2 xxxxxxxx>smallRNA(si3)  ------>NtERF2           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)---------->ID1 xxxxx>smallRNA(si3) <-----------RAV1(1)    <---------TOE2(3)<---------ANAC46   <-----------GT1   <--   ggggcgaatatttacattttttattggtgcctaaatctaacaaattaagttttcttgtagttttcgtggtttcgcaagagtttttcgtcctttcctcatt  14851400                                                 <---------ICU4                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------------->AGL15                             ----------------->AGL2                    --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(s)                   <---------ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->YAB1<---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->AHL20(2) <-----------------AGL1 <-----------GT1       --------->YAB1--------->AHL20(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------YAB1--------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------GLK1(2)     --------->AHL20(2) <---------AHL20(2)      <---------YAB1     <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------AHL20(2)<---------AHL20(1)       --------->ICU4     <xxxxxxxxxxxxxxxxsmallRNA(i) ---------GT1  ------------>CBF    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ALFIN1   tttcgattttaataaaaatcaataatattattccaagaatggcacgagtgattatttcttctcaaatagtggcataagaggtgagccttccaaattcttc  14851500                             --------->GLK1(2)                            --------->ARR11(3)                                           ----------->HVH21                            --------->ARR14(2)                                         --------->LBD16                            <---------GLK1(2)                                        <---------LBD16                           --------->HSFB2a(1)                                     --------->GLK1(2)                           <---------HSFB2a(1)                                     <---------ARR14(2)                           --------->HSFC1(2)                                --------->ARR14(2)                           <---------HSFC1(2)                              --------->HSFC1(2)                          ----------->ARR10                       ------------>CBF --------->ARR14(2)                       --------->LBD16                   --------->HSFB2a(2) --------->GLK1(2)            <---------ATHB12<---------ARR14(2)           <---------HSFB2a(2) <---------ARR14(2)    ---------->DOF2   <---------HSFB2a(2)               <---------LBD16    <---------HSFB2a(1) --------->TOE2(3)    --------->HSFB2a(2)              <---------LBD16     --------->HSFB2a(1) --------->TOE1(3)   <---------LBD16       ----------->GT1--------->LBD16  <---------HSFC1(2)     ---   aacccttaaacccattcattttctccagaagattctgagacgaagaggcaaaattttctcgggaaaatggcaatggaagaatccgattccggtgaaacag  14851600  Previous    Next  AGI:  At5g37390.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 14848662    to: 14851085    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g37400.1    Description:  binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37650.1); contains InterPro domain Protein of unknown function DUF577 (InterPro:IPR007598) Range:  from: 14851573    to: 14853576    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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