Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               ------>ZmHOX2a(2)                                       =============HOX2a_HOX2a                                       <------ZmHOX2a(1)                                    ================HOX2a_HOX2a                             ------->MYC2   --------->CCA1(2)                             <-------PIF5  <---------AGP1               =====================================HOX2a_HOX2a               ====================================HOX2a_HOX2a               ------>ZmHOX2a(1)    <------ZmHOX2a(1)               =======================bZIP_DOF               <----------DOF2      ===============HOX2a_HOX2a            ==================================HOX2a_HOX2a           --------->ARR14(2)<-------MYC4  <---------ARR14(3) -----------HVH21            ------->PIF5  --------->ARR14(3) ---->MYC2 <---------ARR11(3)------->MYC4  <-----------ARR10 -----MYC2 <---------GLK1(2)<---------ANAC46<------ZmHOX2a(2) ---->MYC3 --------->ARR11(3)<-------MYC3  --------->GLK1(2) -----MYC3--------->GLK1(1) =======================================MYC_MYB ------ANAC58==============================HOX2a_HOX2a ------O2 <---------GLK1(1) --------->O2   --------->ARR11(3)    <-------GAMYB ------bZIP60(2)            <---------TGA1a<---------ARR14(2)   <---------MYB46(3) ------TGA1a<------ZmHOX2a(2)<-------MYC2  --------->ARR14(2)  <------NtERF2 ----->TGA1a===============================HOX2a_HOX2a       <---------DEAR3(1) ------ANAC55(2)            <---------ANAC55(2)            <-------GAMYB<---------ARR11(3) ----->ANAC55(2)            <---------O2   <---------ARR11(3)<---------MYB46(3) ------ANAC46=================================HOX2a_HOX2a <---------DEAR3(2) ------ANAC58------>ZmHOX2a(2)--------->ALFIN1         <-----------HVH21--------->ARR11(3) ----->O2----------->ARR10  --------->TGA1a--------->AGP1<---------DEAR3(1) --ARR11(3)--------->AGP1   =======================================MYC_MYB               <---------ATHB12 ->ARR11(3)<---------ARR14(2)------->MYC3----------->ARR10<---------MYB46(3)    --------->ETT(2)   cgtgtcacgagcagatcctttgatgaagacacgtggaaggaggaagatctgggtaatcgtcggtcgtcgttgaagatgtttgtcgactccaatgaaaccc  14839600                                                                                             ------>ZmHOX2a(2)                                                                                             ========                                                                                            <------ZmHOX2a(2)                                                                                            <--------                                                                                            =========                                                                                            ---------                                                                                           <---------ARR14(3)                                                                                           <---------ARR14(2)                                                                                           --------->ARR11(3)                                                                                           <---------ARR11(3)                                                                                           --------->ARR14(2)                           --------->ANAC58         <-------TEIL                           --------->ARR14(3)                           --------->ANAC58     <---------TOE2(3)                         <---------GLK1(1)                       ------>ZmHOX2a(2)   --------->WOX13(1)                    <---------YAB1                 --------->YAB1          <------ZmHOX2a(2)      --------->MYB52(1)        --------->GLK1(1) --------->MYB46(3)<---------YAB1       <---------ARR14(2) --------->AHL20(2)    --------->ICU4     <   aaaaccactggaatatgtatgatgatcgcaagtcaaatcgtcgatccatcaaggttcacaataaactaatggtagcaattgtcaatattgggagatctcc  14839700                                                                  ------->MYC3                                                                  <-------MYC3                                                                  <-------MYC2                                                                  ------->MYC2                            ===============================================bZIP_DOF                            <----------DOF2                       <-------PIF5                          <---------YAB1                          <-------MYC4                         <---------ARR11(3)                       ------->PIF5                         --------->ARR11(3)                       ------->MYC4                         <---------AHL20(1)                      <---------O2                         --------->AHL20(1)                      <---------TGA1a                  ----------->GT1                                --------->O2   --------->TOE2(3)    --------->CCA1(1)                        <---------ANAC46 --------->ARR11(3)     --------->RVE1(1)                        --------->TGA1a                 <--- <---------ARR11(3)<------ZmHOX2a(1)                           <---------ALFIN1                  <--- =========================HOX2a_HOX2a                         <---------REM1(2)           ----------- -GLK1(1)    <---------AHL20(2)                       <---------ANAC58             <---------GLK1(2) =========================HOX2a_HOX2a                 <---------ANAC58       --------->TOE1(3)   ---- >GLK1(1)   --------->AHL20(2)            <------ZmHOX2a(1) --------->ANAC46 --------->TOE2(3)   ---- ---------CCA1(2)----------->GT1        --------->MYB59    ------>ZmHOX2a(1) <---------MYB59    -----   atatatcttagctataaaataggaaaatatctttgtggagattaggaaattgtatagcttcctctccacgtgtagttaacctaaatattctcttgtaaat  14839800 ------AHL20(1)                                                                                  <--- ------ARR11(3)                                                                               ------- >GT1                                                                                         ------>ZmHOX2a(2) ----->ARR11(3)                                         <----------DOF2           <---------ANAC58 ----->AHL20(1)      <---------ATHB12             ------>MYB83                    <---------ANAC58 ---->AHL20(2) <---------TOE1(2)      <-------TEIL------>MYB46(1)  <---------REM1(2)    <----------DOF2   atatcaaggtgtaatcgtatgaaatcaataagagaaaacgttcatctaaacctagccgcttctagtttctacatggtatcagagccttgcctttgatcca  14839900                              <-----------GT1                             <-----------GT1                     ---------->ID1                    <-------GAMYB                   --------->MYB55(2)                   <---------MYB46(3)             <---------ARR11(3)                   --------->MYB52(2)        ------------>CBF ------TOE1(2)   <---------MYB52(1)          <---------ATHB12        ---------->DOF2 -->MYB46(3)   --------->MYB52(2)     ------>ZmHOX2a(1) <----------DOF2                    <---------CCA1(2)   acgttttcttctcttgttcgtttgttgttttttatctctccttacaaatcaatatgttctttggacttcatataagcccattcatcgaagcccatctcta  14840000                                 --------->ZAT6                            --------->HSFB2a(2)                            <---------HSFB2a(2)                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         --------->ARR14(3)                         <---------ARR14(3)                         --------->ARR11(3)                 <---------At4g35610                         --------->ARR14(2)          <---------ICU4                                 <                         <---------ARR11(3)         --------->ICU4                         --------->GLK1(2)                         <---------ARR14(2)      --------->AHL20(2)                        --------->ARR14(2)                        --------->GLK1(1)      --------->ANAC58                            <---------ARR14(2)                        <---------GLK1(1)      --------->ANAC58                       --------->ANAC58              *TSS  --------->ALFIN1           ----------->GT1                        --------->ANAC58   atactccccttcaagatggacagtggagatctcgaacactcatcttgccaagtaaatattgcaactgatttcgcccaagagccttggtaagaaaatcggc  14840100                      <---------ANAC46                    <-----------HVH21                    --------->REM1(2)                   --------->ALFIN1                  ------->MYC3                  ------->MYC2                  <-------MYC3                 <---------ANAC58                 <---------ANAC58                ------->TEIL             --------->ANAC58                                                                  ------             --------->ANAC58                                                              --------->ANAC58            <---------TOE1(2)                                                              --------->ANAC58            --------->SPL7                                                                <---------ZAT18          <---------SPL7                                                                  --------->SPL7         <---------ANAC46                 <----------DOF2            --------->GLK1(2)    <---------TOE1(2)         <---------ANAC58               <---------MYB52(1) --------->ANAC58             <---------SPL7         <---------ANAC58             <---------ANAC58     --------->ANAC58            <---------ANAC58       <-----------HVH21              <---------ANAC46<---------HSFB2a(2)              <---------ANAC46      <-----------RAV1(1)             <---------ANAC58--------->HSFB2a(2)              <---------ANAC58 ---------WOX13(1)<-------MYC2--------->ANAC46<-----------GT1    --------->YAB1       <--------------   taattgctctgtcgtacgaacgtgtcgagtagacacaattccgtcttttatcccatctcgaacgaaatgacaatctttctcaatgtgtttcgtacgctcg  14840200                                    <---------YAB1                              <---------At4g35610                              --------->At4g35610            --------->At4g35610 <----------DOF2        <---------GLK1(2)  <---------ZAT14                             --------->ARR11(3)        <---------ARR14(2) --------->ZAT18                             --------->ARR14(2)        --------->ARR14(2) <---------ZAT18                             <---------ARR14(2)      --------->LBD16      --------->ZAT14   <---------ATHB12 <---------HSFB2a(2)    <---------LBD16     <---------ANAC46--------->YAB1        --------->HSFB2a(2)   --------->MYB52(1) <---------ZAT14  <---------YAB1     <---------GLK1(2)----------->GT1 ----->GT1  <---------At4g35610 <---------DAG2--------->YAB1 <---------LBD16           --------->ANAC58 ---------TaNAC69(2)  --------->ZAT14--------->YAB1  --------->ATHB12 <------ZmHOX2a(1)--------->ANAC58   tgaaataccggattagctgcaatgtgtagtgcagctttattatcacaatgaagacttattgattctggatgaggaacttgaaaaatgagaagcaactcct  14840300                                                           ----------->GT1                                                  --------->At4g35610           <----------DOF2                                                  <---------At4g35610       <---------ANAC58                         --------->ANAC58         <---------LBD16           <---------ANAC58                         --------->ANAC46       <-----------RAV1(2)     <---------ANAC58                         --------->ANAC58     <-----------HVH21         <---------ANAC58                     --------->YAB1         --------->At4g35610 --------->GLK1(1)          --------->ARR11(3)                <---------At4g35610 <---------GLK1(1)         -----------   tgagccataagagttcttgataagtataagccatagctctgtattcagcttcagcggaagagagtgatacccgttcttgcttctttgttttccaacatat  14840400                                                                                                    <                                                                                                  <--                  ----------->RAV1(1)                                    <---------YAB1          <---        <---------ANAC46                                               --------->YAB1          ------   --------->GLK1(1)                                           --------->ARR11(3)             <------ZmHOX2a(2)   <---------GLK1(1)                     ------>NtERF2         --------->GLK1(2)             <-------  --------->ARR14(2)               <---------DOF5.7(2)         <---------ARR11(3)            --------  <---------ARR14(2)              --------->ZAT14              --------->ARR14(2)   --------->HSFB2a(2) >RAV1(1)------>NtERF2            <---------ZAT14              <---------ARR14(2)   <---------HSFB2a(2)   aggggatttgccgagtaagacaacataaccagacagtgaacgacgcgtttttggacatgtttgaaaatctgaatcacaataggcatctagatgaagatca  14840500  Previous    Next  AGI:  At5g37381.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 14840014    to: 14842872    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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