Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                            <--------                                                        <---------AHL20(2)   <-----------HVH21      -                                                        --------->AHL20(2)  ----------->GT1----------                                            --------->ZAT14              ---------->DOF2 --------->ALFIN1 ---->At4g35610  <---------CCA1(2)--------->YAB1  <---------TOE2(3)  <----------DOF2--------->YAB1  <   ctagacaaaacataaacttatatccaaaatttccaaacacaatccctatactaagaatttatataagagctctttcaaaggtcaaatcagagtgggacag  14809800                        <---------HSFB2a(2) ---------ZAT18 <---------HSFC1(1)                                    =============================== -PCF2          ------>ZmHOX2a(1)                                     ---------->DOF2 -------->ZAT18 --------->HSFC1(1)                              --------->YAB1                      = ->HVH21        --------->HSFB2a(2)            --------->WOX13(1)----------->GT1  <----------DOF2   < ---------ZAT14 <---------HSFB2a(2)         --------->TOE2(3)--------->YAB1       ===================   agtgctcaagataagttcctagaaatcgagaaacagagttcaatttcgtcaatctcgagagaataataagaaaaaaggaacttactttgatatcaatttc  14809900                                                                                             --------                                                                                            <------ZmHOX2a(1)            --------->GLK1(2)                                                            --------->At4g35610            --------->ARR14(2)       <---------At5g28300                          --------->ANAC58  =            <---------ARR14(2)       -------->P                               --------->ANAC58   ---- =========bZIP_DOF                  --------->MYB52(1)                 --------->ZAT14--------->At4g35610 =============================================MYC_MYB    <---------ANAC58     --------->ANAC58  ----- ---------TGA1a             --------->ANAC58             <---------ANAC58   <-----------RAV1(2) ----- =========bZIP_DOF          --------->ANAC58 ---------->DOF2       <-----------GT1--------->ANAC58  -   tgatgtgagaagcgaatatgtgtatcaaacaagaaaacttaccgagtaaaagagacaatgcttgaaattttactaaactcaggcaagaagcagaggacac  14810000                                                   ------->MYC3                                                   <-------MYC3                                                  <---------ANAC46                                                  <---------ANAC55(2)                                                  <---------ANAC58                                                  <---------ANAC58                                                  <---------TGA1a                                                  --------->TGA1a                                                  <---------O2                                                  --------->ANAC55(2)                                                  <---------ANAC55(1)                                                  =====================bZIP_DOF                                        <-------MYC3                                        ------->MYC3                                        ------->MYC2                                        <-------MYC2                                        ------->PIF5                                        <-------PIF5                                       --------->O2<-------MYC2                                       =====================bZIP_bZIP       <---------HSFC1(1)              ================================bZIP_DOF       --------->HSFC1(1)              <---------O2------->MYC2       --------->HSFB2a(2)             --------->TGA1a  *TSS <---------HSFB2a(2)             --------->bZIP60(2)  --------->ARR11(3)                   <---------TGA1a                                          -----  <---------ARR11(3)                   --------->ANAC46                                         ----- ->ZAT18   --------->MYB52(1)        <------------OsbHLH66                             ----------->GT1 ================================================bZIP_DOF                             <---------MYB46(3) ----->DEAR3(1)                      <---------ALFIN1                              <-----------HVH21- ---->ANAC58                        --------->TOE1(2)                     <---------CCA1(2)  -------- ---->ANAC58                       --------->DEAR3(2)       <----------DOF2    <---------LBD16------- --------->DOF2               >>>>>>>>>TBF1       --------->O2      <------------CBF <---------ANAC46   cgaagagctctagaaacggcgagagagttgaagaagaacccacgtgagcatcacgtgtttgtcttttgtttattgtttatcttcgggtcgggtaaaccaa  14810100       --------->DEAR3(1)       --------->DREB2C(2)                                                 <---------MYB52(1)       --------->ANAC46                                               <---------O2      --------->MYB46(3)                                              <---------bZIP60(1)     <---------At5g28300                                              --------->bZIP60(1) ->MYB83------>NtERF2                                                 --------->O2 ->MYB46(1)             <-----------HVH21                          --------->ANAC46 ----->ZmHOX2a(1)    <---------ANAC58                         --------->TOE1(3) ---->CBF            <---------ANAC58      <-----------GT1    --------->TOE2(3)             --------- -->AtMYB61    <------------CBF       ----------->GT1         <---------MYB59          ---------->DOF2   tcctactcaccgccaagaattgttcttgtccggtctggtttagttaaactgttcaaaaccgaaacctaaacgacgtcgttttgtctgagtaaagaaaagg  14810200                                        <-------GAMYB                                       <---------MYB46(3)                                       --------->MYB111(1)                                       --------->MYB52(2)                                        ----                                       --------->MYB55(2)                                     -------                                      <--------P                                              <------                                      <---------MYB55(1)                                     <-------                                   <---------ATERF1(2)                                       --------                                   --------->ATERF1(2)                                  <---------ARR14(2)                                  <---------LBD16                                <-------GAMYB-------                                  <---------ANAC46                              --------->MYB111(2)                                  <------NtERF2                                 --------->MYB52(2)                                 ------>NtERF2                                  --------->MYB46(2)                                 <---------RAP2.3(1)                            --------->MYB111(1)                                <---------DEAR3(1)--------->ANAC58              <---------MYB46(3)                                --------->DEAR3(1)--------->ANAC58              --------->MYB55(2)                        <---------GLK1(2)         --------->ANAC46          <---------ZAT6  ------>NtERF2                 <<<<<<<<<TBF1<-----------HVH21  --------->LBD16            <---------AtMYB61<-------              *TSS  <---------At4g35610--------->MYB111(2)           <------ZmHOX2a(1)  --------->ARR14(2) ->DOF2----------->GT1<---------YAB1 <---------MYB52(1)      ----------->HVH21 <--------P --------->MYB46(3)   gttttcgactggtgaattcttcttctgattctcgtcgccggtagttgtttccacgaaaaacaagtgatggaggaagtagtggtagttgcagagccaccac  14810300                                                                     <---------GLK1(2)     --------->KAN4(2)                                              --------->At4g35610 ----->DEAR3(1)                                                     <---------At4g35610 -->AtMYB61                                                     <-----------TGA1 ---ALFIN1                                                      <-----------HVH21             <------ --ABI4(2)                                           ------>ZmHOX2a(2)--------->GLK1(2)     --------- ->MYB46(3)                                ----------->TGA1 <----------DOF2                <---------YAB1 -->DEAR3(1)                  <---------ARR11(3)   --------->ARR11(3)<---------ARR14(2)<---------ARR11(3) --MYB55(2)<----------DOF2    --------->ARR11(3)   <---------ARR11(3)--------->ARR14(2)--------->ARR11(3)   cgaagattactccctttgtggaatacgaagaagagcttgaagatgatgacgatgatctctcgctttcgtcagattccgatatcgctgaagctcttgattg  14810400                                     <----------DOF2                                    <---------ANAC58                                                <                                    <---------ANAC58                                 --------->ANAC58                                   <------NtERF2                                     --------->ANAC46       ---------->DOF2           <---------RAP2.6(2)                                 --------->ANAC58     --------->At5g28300       <---------MYB46(3)                        <---------ETT(2)           <    ----------->GT1           --------->ALFIN1                           <---------ZAT18            - ---WOX13(1)                  <---------AtMYB61             ------>ZmHOX2a(1)    <-----------HVH21  - >ATHB12                  <---------WOX13(1)          ---------->ID1    --------->ALFIN1     --------   gctagacggtaaagacgatgacgagctaattggtggtggcttttctcttcatgctcgtcgtcctaatgctcacggtggacatggttcacgccctaactct  14810500                                            ==========================bZIP_DOF                                            <---------TGA1a                                <---------HSFC1(2)                                --------->At4g35610               <---------SPL7                                --------->HSFC1(2)  <---------ANAC58       <---------ANAC58                              <---------GLK1(2)     <---------ANAC58    <---------MYB52(1) ---------ZAT14            <-----------RAV1(2)  <---------ANAC58--------------->AtSPL3 ---------ZAT18            --------->HSFB2a(2)  <---------ANAC58<---------------AtSPL3 -------->ZAT14            <---------HSFB2a(2) <-------TEIL<----------DOF2 <---------ANAC58 -------->ZAT18      ---------->DOF2        --------->TGA1a--------------------->WRI1 ->ZAT6              =================================bZIP_DOF  <---------------AtSPL8             --   agtgctcttcagcctatttcaaataaggcccagaagcttactagtcacgttcgtgcttctcctttggaggtaccgtttcttatcgaatttttgtttagaa  14810600                                    <----------DOF2                                   ------>ZmHOX2a(2)                                   <---------ICU4                                 --------->ARR11(3)                                 <---------ARR11(3)                            --------->ARR11(1)                            --------->ARR11(3)                                       ------->TEIL          --------->At4g35610--------->CCA1(2)                                       <---------YAB1    ---------->DOF2         <---------ARR11(3)                             --------->At4g35610 --------->GT1          ---------->DOF2               --------->At4g35610  <---------At4g35610   tttgaaaaaagcttctgaatttcttataaagatatgatctttacatttgaaatagcttctgaattgctcatagtctctgctcaaatgaacattgagttta  14810700  Previous    Next  AGI:  At5g37340.1    Description:  zinc finger (ZPR1-type) family protein. similar to zinc finger (ZPR1-type) family protein [Arabidopsis thaliana] (TAIR:AT5G22480.1); similar to Os08g0471900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062017.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71442.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ68962.1); contains InterPro domain Zinc finger, ZPR1-type; (InterPro:IPR004457) Range:  from: 14804497    to: 14810002    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g37350.1    Description:  RIO1 family protein. similar to RIO1 family protein [Arabidopsis thaliana] (TAIR:AT2G24990.1); similar to RIO kinase [Nicotiana tabacum] (GB:BAD12556.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68298.1); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain RIO kinase; (InterPro:IPR000687); contains InterPro domain Serine/threonine-protein kinase Rio1 (InterPro:IPR017407) Range:  from: 14810214    to: 14813257    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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