Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  >>>>>>>>>>>>>>>>>LFY   <---------ATHB12                                                         ----------->GT1          --------->ANAC58    --------->LBD16                               ----------------->AGL1          --------->ANAC58 ----YAB1                                         --------------->AGL15           --------->ANAC46 --ICU4                                           ----------------->AG         ------>ZmHOX2a(1) ->YAB1      ------>ZmHOX2a(1)                --------->At4g35610        --------->MYB52(2)        <- -YAB1 --------->DAG2                         <---------At4g35610  --------------------->WRI1      -- >ICU4---------->DOF2                   <<<<<<<<<TBF1  <---------ATHB12  <---------MYB46(3)       <--   actctccgaaaagtcctccaaacaaatcgaacaagtggtttcttcttcatctcccaaatcagtaaattccattgtttgttcctcaagcaatctttgaaac  14775400                                                                            <------MYB46(1)            ---------->DOF2                                     --------->ANAC58        --------->ANAC58                            --------->ANAC55(2)     <------MYB83        --------->ANAC58                            --------->ANAC55(1)    --------->ALFIN1        --------->ANAC46           --------->ARR11(3)           --------->ANAC58 ---------->TaMYB80     <---------ETT(2)              <---------ARR11(3)   ---------->DOF2   --------->ALFIN1     --------->ETT(2)        --------->YAB1         --------->ANAC58      <--------P --------ARR11(3)        --------->DOF5.7(2)        <---------ANAC55(2)--------->DAG2  --------->At4g35610 ------->ARR11(3)        --------->At5g28300        --------->ANAC58   <---------TOE2(3)        ----- -------CCA1(2)         ----------->GT1             --------->ANAC46 ---------->DOF2   --------->ZAT18   atatctctcgacggaacagcaatagacggtaacataacatctcttgtgactctcacgtaaaaggagacgctaaaaggttggggaatatgagcacaatcca  14775500                                                              <---------WOX13(1)                                                 <-----------HVH21     <---------ANAC46                                             ------->TEIL  <---------YAB1                <---------MYB46(3)      <----------DOF2             --------->ARR11(3)   <---------ARR14(3)            <---------YAB1      ------>ZmHOX2a(1)           <---------ARR14(2)   --------->ARR11(3)            --------->ICU4   <------ZmHOX2a(2)              --------->ARR14(2)   <---------ARR11(3)   <---------ANAC46 ----->DOF2     --------->MYB46(3)<---------ARR11(3)   --------->ARR14(3)   <---------TGA1a   aagcgatcctttcgctcaacaatcgacaaaactcaatatctgtgatgaactcgtcaaggtcttgatagatgtgatgtgaagtgagacatgatggtttcaa  14775600                            --------->KAN4(2)                           <---------HSFB2a(1)                           --------->HSFB2a(1)                           <---------HSFC1(2)                           <---------KAN4(1)                           --------->KAN4(1)                           --------->HSFC1(2)                          <---------KAN4(2)                      --------->LBD16                      ------>NtERF2                      --------->ARR11(3)                     --------->RAP2.6(2)            <---------MYB52(1)                    <------NtERF2               ------>NtERF2                    --------->ATERF1(1)        <---------ALFIN1                   <---------At4g35610      <---------TGA2(1)             --------->WRKY45                  <---------ARR14(2)        --------->bZIP60(1)           --------->WRKY12                  --------->ARR14(2)        <---------bZIP60(1)           --------->WRKY38(1)                  --------->TCP20           --------->ANAC46        >>>>>>>>>AtLHY                  --------->TCP16(1)        --------->TGA2(1)       >>>>>>>>>AtCCA1        <---------WOX13(1)               --------->ALFIN1            --------->RAP2.6(3)  <---------At4g35610   --------->REM1(2)           <---------YAB1 --------->SPL7 ----------->TGA1<---------ARR11(3)<---------WRKY18(1)           --------->ICU4 ------->TEIL <---------ANAC55(2)      --------->At4g35610<---------ANAC46         --------->YAB1<---------MYB52(2)----------->HVH21 ------>ZmHOX2a(2)  <---------ALFIN1   ttcgattttagtcataagtggagccgcgaacgttcccaaacacatgacgacaccgttttgatcttcagctaactcgttgaccacatcgtgtagattgacg  14775700                                   <---------ICU4                                   --------->ATHB12                                  <------ZmHOX2a(2)                                  <---------YAB1                                 --------->ARR11(3)                                 <---------ARR11(3)                                <------ZmHOX2a(1)                               <------MYB83                               <------MYB46(1)                             <--------P                          <---------AtMYB61                      =================HOX2a_HOX2a                      ------>ZmHOX2a(2)     <---------REM1(1)                    --------->ARR11(3)    <-------GAMYB  --------->ZAT14        ------->TEIL        >    --------->ALFIN1<---------ARR11(3)   <-----------RAV1(1)         <---------ATHB12           <----   aacacggtgtttctaaacccttgatcttgtggtaggatcattgctgttgtagtaatctctacagactcccaattactatatgtatccatggtggaagagg  14775800                                                                              <---------ZAT6                                                                       --------->AHL20(2)                                                                       <-----------TBP                                                                       <---------AHL20(2)                                                                     ----------->TBP                                          ----------->GT1            --------->AHL20(2)                                        >>>>>>>>>ARR2               --------->AHL20(1)      <--------                                        <------------CBF            <---------ARR11(3)    <---------ANAC58                                        >>>>>>>>>ARR1          ------------>CBF           <---------ANAC58        <-------TEIL<----------DOF2   <---------YAB1           <------ZmHOX2a(2)         <---------TOE2(3)       --------->CCA1(2)              <---------TOE2(3)       <---------ARR11(3)   <------MYB83    <- >>>>>>>>TBF1 --------->TOE2(3)     --------->CCA1(2)         --------->ARR11(3)   <------MYB46(1) -- --ZmHOX2a(1) --------->TOE1(3)   --------->CCA1(2)---------->DOF2  <---------AHL20(1)  <-----------GT1   aagaagaagattcaaaccctaacttttgatatgaagagataagattgtgaaatcaaagagaagagatcaatatatatatagagataggttttacgtttgg  14775900                                           --------->DAG2                                          ---------->DOF2                                      ----------------->AGL1                                     <-----------------AGL1                                        --    ----------->GT1                  <-----------------AG    <------MYB46(1)  ----------->GT1  <----- -MYB52(1)                 <---------AHL20(1)       <-----------GT1     <---------TOE2(3)------->TEIL --------ATERF1(1)         <---------AHL20(2) ----------->GT1<------MYB83    ----------->GT1   ------ ---->NtERF2---------->DOF2--------->AHL20(2)----------->GT1--------->MYB59---------->DOF2   <-------   ccgactcagtaaaaaaaaggaaaacataaaaaatttgttgacgaaaaagggaaataactaatttggtcgaatttaagaaaaggaaaatatgaatttagtg  14776000                            ------->GAMYB                          <---------TOE2(3)        ---------->DOF2<---------ATHB12      --------->YAB1   <---------MYB52(2)      --------->AHL20(2) <-----------GT1                                                --------->AHL20(2)     ----------->TBP --------->WOX13(1)                                                 <---------AHL20(2) ------------>CBF  ------------>CBF              ----------->GT1            <---------TOE2(3)       - <---------ATHB12  --------->MYB46(3)    <------------CBF                   <---------TOE1(3)      <- ------->WOX13(1) --------->ANAC58     <---------YAB1                      ---------->DOF2     <----- ----ZAT6         --------->ANAC58     <---------TOE2(3)                 --------->DOF5.7(2)<-------- ----->GT1  <------ZmHOX2a(1)          <---------TOE1(3) <---------TOE2(3) <---------DOF5.7(2)<------ --ANAC46  <----------ID1--------->MYB52(1)   ---------->DOF2 <-----------GT1          --------->AHL20(2)   taaatcaataaaaaggacacaaccaattaacgctcgagtttaagattgaaaaggaaatttagattaacaaaacgcgttaaagtttttcatttaattttta  14776100     --------->AHL20(2) <---------AHL20(2)                                                                          -------- --------->AHL20(2)                      <---------MYB46(3)                              <---------HSFB2a(2) -------->AHL20(2)            --------->ARR11(3)                                         --------->LBD16 --------AHL20(2)             <---------ARR11(3)                                         --------->HSFB2a(2) ----AHL20(2)                <---------CCA1(2)                   <---------GLK1(2)      <---------TOE1(1) -ICU4--------->MYB52(1)   --------->ANAC55(2)              --------->SPL7   --------->MYB46(3) ---YAB1  --------->ZAT14  <---------ANAC55(2) --------->ZAT6 <---------ALFIN1    --------->ZAT14   ttttaaattaactgaagtcagggaacattacatatctctgtattggttaactctcaaaaccgttccacattcttttgaaaccaatgtagtccgagaaaag  14776200                             ----------->GT1                          --------->CCA1(2)        <---------------AGL15                         --------->ARR14(2)        --------------->AGL15                         <---------ARR14(2)       ----------------->AGL3                   <---------ALFIN1               ----------------->AGL2                  <---------WRKY38(1)             ----------------->AG                  --------->ZAT14        --------->LBD16                  <---------WRKY12      --------->ANAC46                  <---------ZAT14      <---------LBD16                         ------>MYB46(1)                 --------->PCF5       --------->MYB52(1)  ----------->GT1      ------>MYB83             --------->At4g35610     <-----------GT1    ---------->DOF2       ----------->RAV1(1) -->DOF2    --------->MYB52(1)    --------->YAB1<-----------GT1             --------->MYB46(3)   gaaaacataaaaaccagcggtccactggatatggtttaataaccggaatttaaccaaaaaaagaaaattggaaccgaaaccaacaaaatagtttgacaat  14776300  Previous    Next  AGI:  At5g37270.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G37230.1); similar to hypothetical protein OsI_036181 [Oryza sativa (indica cultivar-group)] (GB:EAY82222.1); similar to Os12g0140600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066123.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 14775163    to: 14775789    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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