Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <------ZmHOX2a(2)                                                                                   --------->ANAC55(1)                                                                                   --------->ANAC55(2)                                                 <--------ATHB1                    <---------ANAC55(2)                                                 --------->YAB1                   <---------LBD16                                                 --------->ATHB51              ------>MYB83                   --------->ANAC58              -------->HAHB4                ------>MYB46(1)                   --------->ANAC58              <---------ICU4              --------------->AGL15                   <---------ANAC55(2)           --------->ATHB12            <---------MYB59                   --------->ANAC55(2)           <--------HAHB4              <---------------AGL15                   --------->ANAC55(1)          <---------ATHB51            <-----------------AGL1                   --------->ANAC46             <---------YAB1              <---------ANAC55(2)              <---------AHL20(2)                --------->ICU4              --------->ANAC55(2)              <---------ICU4                  --------->YAB1                ----------------->AG              --------->AHL20(2)           ----------->GT1                  <-----------------AG             --------->AHL20(2)         ----------->RAV1(1)                 ----------------->AGL3  -     --------->AHL20(2)                --------->AtMYB61                    ----------------->AGL1<--     <---------AHL20(2)            <---------ETT(2)                       <-----------GT1         <--   agtctaataaaactaattaatacgcaactagaagaggtagaccaccagtaataattaggggattagagacatgttcttacctaatacggatcaatacatt  14769900                                  --------->YAB1                             ------>MYB46(1)                             ------>MYB83                            --------->ORA47(1)                                              ---------                           --------->DEAR3(1)                                    ----------->RAV1(1)                           ------->GAMYB ======================RAV             ------>MYB46(1)                          --------->MYB46(3)                                ----------->RAV1(2)                          --------->DEAR3(2)                                =================RAV                         --------->MYB52(1)        ----------->RAV1(2)    <-----------GT1  <---------KAN4(1) --------->DOF2         --------->MYB52(1) --------->ANAC46              <-----------GT1  <---------KAN4(2) -------YAB1           --------->MYB46(3)----------->RAV1(1)    --------->ZAT6 ------>MYB83--------->KAN4(1) -------TOE2(3) <----------DOF2--------->YAB1 <---------ICU4  <-----------GT1 --------->ANAC46   aagaaagaagtaatctctctttaaaacaaccgaccataatatcccacataatcgcctggtctattaacacaatttttaacctgccacaatcgaataatct  14770000                                                                                      ----------->GT1                                                                                     --------->MYB59                                                                                     <---------TOE2(3)                                                                                     <---------TOE1(3)                                                                             --------->TOE2(3)                   ---------->DOF2                                           --------->TOE1(2) >YAB1  <---------ARR11(3)                          <-----------GT1          --------->TOE2(2)   tcagttccaagttctctcagacaaagagattaaacttgaaattagataacaaaataacctattttctctcggacataaacctaagtttaggttaaatctg  14770100                                                             --------->YAB1     ------>ZmHOX2a(2)                                                <---------YAB1                 <------ZmHOX2a(2)                              --------->At5g28300        ---------->DOF2      <---------ARR11(3)                             ----------->GT1--------->ARR11(3)                --------->ARR11(3)                    --------->YAB1          <---------ARR11(3)                <---------AGP1       <-        --------->ANAC46  ----------->RAV1(1)<------ZmHOX2a(2)     ---------->DOF2                 --   tctggattccacaagacttgaaacataacaacagtaacaaaaccaagatcaagattgcataaagaataacaaagaagatagatctcaaacctgcatagcc  14770200                                           --------->GLK1(1)                                           <---------GLK1(1)                                       ------>ZmHOX2a(2)                                      --------->CCA1(2)                                      <------ZmHOX2a(2)                                     --------->ARR11(3)                                     --------->ARR14(2)                                     <---------ARR14(2)             >>>>>>>>>TBF1           --------->AGP1          >>>>>>>>>TBF1              <---------ARR11(3)            ---------->DOF2    <---------HSFB2a(2)              <---------AGP1          >>>>>>>>>TBF1    --------->HSFB2a(2)        --------->CCA1(2)          >>>>>>>>>TBF1                       <------MYB83 --------MYB46(3)             <---------ARR11(3)   <---------At4g35610                        <------MYB46(1) ------->ATHB12 >>>>>>>>>TBF1 --------->ARR11(3)   --------->At4g35610                   <---------TOE2(3)   atggttgcagaagaagaagaagaagacttgaagatttaagatctgaaatctgaagctgaagaagaagaataaagagagagagaattgttttgagattggt  14770300                                                                          --------->YAB1                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                    --------->ANAC55(1)                                                                    <---------O2                                                                    --------->bZIP60(2)                                                                    --------->ANAC58                                                                    <---------ANAC55(2)                                                                    --------->ANAC55(2)                                                                    <---------TGA1a                                        <----------DOF2             --------->TGA1a                                        ======================================bZIP_DOF                                        --------->TOE2(3)           --------->ANAC46                                    <--------P                      --------->ANAC58                                    ==========================================MYC_MYB          <-----                             <---------WRKY38(1)                    --------->O2              -------                             <---------WRKY12                       ==============================bZIP_DOF                      --------->At4g35610                      --------->ANAC58          <-----------TBP                  *TSS<---------At4g35610   ---------->DOF2    --------->ANAC46        --------------                ---------->DOF2   ----------->GT1              --------->ANAC58      ---------->ID1              <---------YAB1--------->WRKY18(1)              --------->CCA1(2)      <-----------GT1     <---------MYB46(3)    <-----------HVH21==================================bZIP_DOF <----------DOF2   gagagagttgttgtttatgaaaggagcagagtcaaggggttactttaaaagagcaagaagaagataagccacgtaagcataatgtttttctttttataaa  14770400                                                                                   --------->GLK1(1)                                                                                   <---------GLK1(1)                                                                                  <---------ARR14(2)                                                                                 <XXXXXXXXXXXXXXXXXXX                                                                            --------->ALFIN1                                                                           ------->PIF5                                                                           <-------MYC3                                                                           ------->MYC3                                                                           ------->MYC4                                                                           <-------MYC4                                                                           ------->MYC2                                                                           <-------MYC2                                                                           <-------PIF5                                                                          ===========================                                                                          --------->TGA1a                                                                          --------->O2                                                                          ===========================                ---------->DOF2                                           <---------TGA1a   <---------ANAC58                         <---------O2  ---------->DOF2 ===========================   ----------->GT1                          <-----------RAV1(1)           <---------ANAC46   <---------ANAC58          <---------HSFB2a(2)          ==========================bZIP_DOF   <---------ANAC46          --------->HSFC1(1)      ----------->GT1      <---------ANAC55(2)  <----- ----AHL20(2)----------->GT1 --------->HSFB2a(2)    <---------TOE1(3)----------->HVH21     ---------- -->YAB1  --------->DAG2     <---------HSFC1(1)    <-----------RAV1(2)    <---------O2  <<<<<<<<<TBF1 ->AGL15 ---------->DOF2    <---------ANAC46===================RAV <---------ICU4<------ZmHOX2a(1)   aatttgggtgaaaaagcgtaaagaggggtttcgagaaactagtatcatgtggctcaggttaaaagatgctaatgacacgtggaggatttcttcttcgctt  14770500                     <---------CCA1(1)                     <---------RVE1(1)                    <---------YAB1            <---------ANAC46                              <---------AHL20(2) <----------DOF2    <---------ARR14(2)                <---------RVE1(1) <---------DAG2     <---------ARR11(3)               <---------ARR11(3) XXMIR2933A/B--------->LBD16                         --------->ARR11(3)          ---------->DOF2 ==================bZIP_DOF                       <------NtERF2               <---------HSFB2a(2) ===========bZIP_DOF--------->ARR11(3)          --------->ETT(1)              --------->HSFB2a(2) =====bZIP_DOF    ----------->ARR10           <-----------HVH21       <---------AHL20(2) -----DOF2 <---------LBD16       <----------DOF2<---------ANAC46  --------->AHL20(2) >ID1   <----------DOF2  <-----------GT1 --------->ARR11(3)       <---------AHL20(2)        ---------   tcacttttgtctttgcggagaagatattatctgttctttgttaaatcttgtcggagatttttaattgtttaatttatctactagaaagtttttttaaaga  14770600                                                   <-----------GT1                                            <---------ANAC58                                            <---------ANAC46                                         <---------CCA1(2)            --------->ATHB12            <-------MYC2            <---------ICU4              <-------MYC3                                          -------           --------->ICU4               ------->MYC3                                        <--------           <---------YAB1              <---------ANAC58                 --------->ANAC46 <---------YAB1         <---------ICU4                <---------ANAC58                -------->P ---------->ID1        --------->ICU4    ----------->HVH21 <---------ANAC58          <-----------GT1    <---------AHL20(2) ->DOF2 <---------YAB1  --------->ANAC46------->MYC2           <-----------GT1  <-----------RAV1(1)   agctcatttcatgattattgccaaactcgcgactggtgagcgcgtgtcttgtttaacaacgttgtttacttcttaccccattttgttgttttttattaat  14770700                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                      <---------AHL20(2)                           <---------------AtSPL8                                     --------->AHL20(2)              <---------AHL20(2)                                                      --------->AHL20(1)     <---------WOX13(1)    --------->MYB59                                   --------->AHL20(2) <----    <---------ANAC58       <---------TOE2(3)                             <---------TOE2(3)--------->AHL20(2)    <---------ANAC58 <---------TOE2(3)    <---------WOX13(1)             <---------YAB1  <---------AHL20(2)   --------->ATHB12  <---------TOE1(3) <---------AHL20(2)          --------->AHL20(2) <---------AHL20(1) -->WOX13(1)  --------->AHL20(2)       --------->AHL20(2)       <---------HSFB2a(2)  --------->AHL20(2) -YAB1       --------->AHL20(2)<-------TEIL  <---------TOE2(3)  --------->HSFB2a(2)  --------->YAB1   caagttgattgcatatttaattttaggtttaggtacagtatttaattgaagttgagaaatacagttccataaaataagattaaacaattatattatttat  14770800  Previous    Next  AGI:  At5g37260.1    Description:  CIR1/RVE2 (CIRCADIAN 1); DNA binding / transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G17300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22193.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 14768574    to: 14770318    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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