Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->ANAC58                            <<<<<<<<<TBF1                                                      ------                       <----------DOF2       ----------->GT1                                  <------                   ------>NtERF2     --------->AtLEC2           --------->YAB1                ------- ---->TEIL         <---------ALFIN1  --------->ANAC58       <---------YAB1                    <------ ----YAB1         --------->LBD16    --------->ANAC46  <---------ICU4             ---------->DOF2  <-   aatgctatgttcttaaaatcccgacctttcttcttccccatgcaatttggaaaatcaacattacaattgtaactcgtaaacaaaaaaagagaagtaatga  14722300                                                       ---------->DOF2                                                    --------->ANAC58                                                  >>>>>>>>>>AtWER                             --------->ZAT6     --------->ANAC58     ----------->GT1    <---------ICU4          --------->ANAC46                                   <- --->ATHB12           <---------ARR11(3)        --------->ANAC58                                 ---- ---ATHB12            --------->ARR11(3)    <----------DOF2                    ------>ZmHOX2a(2) <--- -->ICU4            <---------AHL20(2)      <---------DAG2                   --------->ARR11(3)  ---- ---YAB1           --------->AHL20(2)   <-------TEIL--------->ANAC58         <---------ARR11(3) <---- --------AHL20(2)--------->YAB1        --------->DOF5.7(2)              <-------TEIL            -----   tttaaaatggtttaaacaaaaataaatctttacactaatacgttcactttacgcatgcaaagtctcatacatggttcatgatctctacataattcaaatt  14722400                                   --------->GLK1(2)                                   <---------YAB1                                 <---------RVE1(1)                                 <---------CCA1(1)          --------->CCA1(2)     --------->ARR14(3)       <---------TOE2(3)        --------->ARR11(3)       <---------YAB1           <---------ARR11(3) -----------CBF                 --------->ARR14(2) ----->AHL20(2)                 <---------ARR14(2)                                                 <- ------AHL20(2)                 <---------ARR14(3)                                       <-----------GT1 ----->AHL20(1)           <-----------GT1                  --------->bZIP60(1)        <----------DOF2 -----AHL20(2)        --------->WOX13(1)                   <---------bZIP60(1)<----------DOF2   <---- ---->AHL20(2)      ------------>CBF                <---------AHL20(2)        --------------------->WRI1   aaattgactaagatagaagaagttcaattaacaagatattcttggaaaatgtttttatttgacatcattttccaaagtctctttggacctttcaccttct  14722500                                            ------>ZmHOX2a(2)                                           <---------GLK1(1)                                           --------->GLK1(1)                                    <----                                           <------ZmHOX2a(2)                                    -----                                          <---------ARR14(2)                   --------->ARR14(2)                                          <-----------ARR10                    ------>MYB83----------                                          <---------AGP1                       <---------ARR14(2)  <-                                          --------->AGP1                     --------->MYB46(3) <----        <---------TOE2(3)                 --------->ARR14(2)                 --------->AtMYB61  <----   <----------DOF2                        --------->ARR11(3)                ------------>CBF    <----  ==============================MADS_MADS <---------ARR11(3)             <---------ZAT18  --------->DAG2  <---------DAG2                         <---------CCA1(2)       <---------GLK1(2) ------>ZmHOX2a(1)  --------------->AGL15         <-----------HVH21              <---------ATHB12------>MYB46(1)  <---- ----------GT1----------------->AGL1--------->ANAC58         <------------CBF<---------ALFIN1 <------ ------DOF2   ----------------->AG  --------->ANAC58    ---------->ID1   --------->ZAT18 ---------->DOF2   tttaccttttaagtttaccgaaactgatagtgagagtcacaccagatctctcttcttcgtctccattgattcttctgcaccaatcctctaaaaaagttac  14722600                                                                      --------->ANAC58                                                                      --------->ANAC58      <---------ANAC58                                                --------->ANAC46      <---------ANAC58                                               <-------TEIL -----ANAC55(2)                                 <----------DOF2     --------->CCA1(2) ---->ANAC55(2)               --------->ANAC55(2)    <---------WOX13(1)     --------->ARR11(3) ->GT1<---------ANAC46        --------->YAB1   <---------ANAC58     --------->ARR14(1) ----------HVH21             ---------->ID1    <---------ANAC46    --------->ARR11(1) -----ANAC58              <----------DOF2      <---------ANAC58    <---------ARR14(2) -----ANAC55(1)     ---------->DOF2         <---------MYB52(1)     --------->ARR14(2) -----ANAC46     --------->ANAC58          <-------GAMYB          --------->CCA1(2)         --------- -----ANAC58     --------->ANAC58       <---------At5g28300  ---------->DOF2<---------ARR11(3) -----GT1 ---------->DOF2<---------DAG2<-----------GT1   --------->ZAT6 ---------->DOF2     ---------   ttgtcatgtcttgaaagacaagtaaagccttttcgtaatttctaccgttgctttgatggacactaaagagatacgaaagctcttggaaaaaaacgagcaa  14722700                                                      ------>ZmHOX2a(2)                                                     --------->GLK1(1)                                                     <---------GLK1(1)                                                     <------ZmHOX2a(2)                                                    --------->ARR14(2)                                                    --------->ARR14(3)                                                    <-----------ARR10                                                    <---------ARR14(3)                                                    --------->ARR11(3)                                           ==================HOX2a_HOX2a                                           ------>ZmHOX2a(1)                                          --------->ANAC46                                          --------->TOE2(3)                                          --------->TOE1(3)                                       --------->ARR11(3)                                       <---------ARR11(3)                                       --------->ARR14(2)                                       <---------ARR14(2)            --------->ARR11(3)                                      <---------GLK1(1)              <---------ARR11(3)                                      --------->GLK1(1)          ---------->DOF2                                      --------->RVE1(1)      --------->ANAC46                                     --------->ARR11(3)      --------->ANAC58  <----------DOF2                                     <---------ARR11(3)      --------->ANAC58 ------>ZmHOX2a(2)                                 ---------->DOF2    <---------ARR11(3)      <---------ARR11(3)    <----------DOF2           --------->ANAC58      <---------AGP1 --------->DAG2 >ANAC58                      --------->ANAC58      <---------ARR14(2)      --------->ARR11(3) >ANAC58                  <-----------HVH21=================HOX2a_HOX2a <----------DOF2  <-----------GT1   acaagtcttttcgctagactatgttcttggtcactcaaagatatcctcaacgaagatctctccaaggaaaaggtctttgatcttttttttttaaccattt  14722800                                                                                   <---------YAB1                                                                               <---------MYB52(1)                         --------------->AGL15                               <---------ANAC58          <---------ARR11(3)<---------YAB1                    --------->ANAC46<-------GAMYB       <----------DOF2   <---------------AGL15       --------->YAB1          <---------ANAC58       <---------DAG2   --------->ANAC55(2)       <---------ICU4             <---------ANAC46       -   cttcagtagctttatcttcagtacttacttatttttgtatttttgtaacagataatgacaataccagacagatttagttccgttgatgaatactctcagt  14722900                                                       <----------DOF2                                                      =======================HOX2a_HOX2a                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                     ========================HOX2a_HOX2a                                                     <---------RVE1(1)                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                    <---------ARR14(2)       --------->ANAC58                          --------->ANAC58          <---------AGP1           --------->ANAC58                     <---------ARR14(2)             --------->AGP1     <-----------HVH21          ---                     --------->ARR14(2)  --------->HSFB2a(2)    <---------ARR11(3)           <-------                    <------ZmHOX2a(1)    <---------HSFB2a(2)   <---------GLK1(1)    <----------DOF2--       ------>ZmHOX2a(1)  --------->ANAC58          --------->ARR14(2)------>ZmHOX2a(1)    --------->REM1(2) -------------->AtSPL8    --------->ANAC46         <---------CCA1(2)----------->RAV1(2) <---------ANAC46   gttttgttcctcatttactcgaggaaacacgaactgagttgttctcgagcttcagatctttatcgaaatctcctgtctcacgaatactttctgtggagac  14723000                                                      --------->MYB52(1)                                                    --------->AHL20(2)                                                 <---------AHL20(1)                                                 <---------AHL20(2)                                                 --------->AHL20(1)                                                 --------->AHL20(2)                                            --------->ARR11(3)     <---------WOX13(1)                     <---------ARR11(3)                               --------   --------->ATHB12          <------ZmHOX2a(2)  --------->AHL20(2)                  --------->AHL20(1) ------->DOF2          <---------WRKY12    --------->YAB1                     --------->ANAC58     -- ---ID1             <------MYB46(1)<---------MYB46(3)<---------AHL20(2)       --------->ANAC58   ---- ------->DAG2       <------MYB83  --------->ALFIN1  <---------AHL20(2)----------->GT1--------->CCA1(2)   aaaagtgattgaatatagtggaaggtcatcgatcaagtggttccatgatattaaattaatggattatgcagacgataaaaacgaaatatatgagccaaag  14723100            <---------ZAT18            --------->ZAT14            <---------ZAT14            --------->ZAT18        --------->ATHB12                                             <---------MYB52(1)       <---------AHL20(2)                                           <----------DOF2       <---------YAB1                                             ------>ZmHOX2a(2)     <---------RVE1(1)                                           <------ZmHOX2a(2) <---------ANAC55(2)     <---------CCA1(1)                                          <---------ARR14(2) <---------ANAC55(1)    <---------ARR11(3) --------->At4g35610                      --------->ARR14(2) --------->ANAC55(2)    --------->ARR11(3) ------>ZmHOX2a(1)                   <---------ANAC46        <---------ANAC46  ----------->ARR10    <---------At4g35610                 <---------ANAC58        <---------ANAC58 -->DOF2--------->ATHB51                           --------->GLK1(2)------>ZmHOX2a(1) ------->ALFIN1      --------->ZAT18       <----------ID1  <---------ANAC58  <---------TOE1(2) ------ ----->ALFIN1        <---------ZAT14    ---------->DOF2    <---------bZIP60(2)     <---------ANAC58--   tgtggagatattattgcactgagtcctctgagtttgacagaagaaaggccaagaatcgatgacttggatcctttacttctaggttacgttttctctgtgt  14723200  Previous    Next  AGI:  At5g37160.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37150.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G52090.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69346.1); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 (PTHR10887:SF27); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain P-loop containing nucleoside triphosphate hydrolases (SS Range:  from: 14722656    to: 14725606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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