Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ANAC55(2)                                                                   --------->ANAC55(1)                                                            <-------TEIL   ------->TEIL                                                      <---------AHL20(2)----------->GT1            --                                                  --------->ATHB12 --------->ANAC55(2)             --                                                 <---------YAB1    --------->ANAC58                --                                   XXXXXXXXXXXXXXXXXXXX>MIR837-3P  --------->ANAC58              <---                                  ----------->GT1--------->ICU4--------->AtLEC2            <---------DAG2                                  <----------ID1 <---------ATHB12  --------->ANAC46        <---------             <---------GLK1(2)  ---------->DOF2 <---------TOE2(3) ------->TEIL  <---------YAB1 <-----   cattactagttgacataatctctcgctaaaaaaaaaaagaaaaaaaaactaatgatttaaaatgcatgcacgtaatgtaactctgaatgcagactttatg  14718200                                          --------->AHL20(1)                                          <---------AHL20(1)                                          <---------AHL20(2)                                          --------->AHL20(2)            <---------ANAC58                                         --------->AHL20(2)             <---------ANAC58                                         <---------AHL20(2)             <---------ANAC46 ------->ANAC58                      --------->AHL20(2)          <---------AHL20(2) ------->AtLEC2               --------->AHL20(2)    ----------->GT1   <---------AHL20(2) ------->ANAC58         <---------ANAC55(2)   <---------AHL20(2) --------->AHL20(1)              <--- ------AtLEC2           --------->ANAC55(2)   --------->AHL20(2)--------->YAB1   ----------->GT1----- -DOF2             <---------ICU4    <---------AHL20(2)         --------->AHL20(2)              <---- ----YAB1   --------->ATHB12  <---------AHL20(2)  ---------->DOF2<---------AHL20(1)        --------->AHL20(2)   catgcaaattcaattcattggtcattacatatttaaattttaaataaattaaaaaagaaaatcgaattatattttcttggaaacggttgaaaatttaaga  14718300                                     --------------->AGL15                                     <---------------AGL15                    --------->HSFB2a(1)              ------>MYB46(1)             --------------------->WRI1              ------>MYB83 ---ZmHOX2a(2)      <---------HSFC1(2)             <---------MYB59             --------->GLK1(1) ---->ARR11(3)      <---------HSFB2a(1)            --------->AtMYB61 <---------ZAT14          <------ -----ARR11(3)      --------->HSFC1(2)<----------DOF2--------->MYB52(1)        <---------GLK1(1)   tcattttcaaagtttttttggacccttcgtcttcgtcttcctttttaagtagaccaaactgatagtgagagtttacttcagatttctcttcttcgtcttt  14718400                                                                         <---------TOE2(3)                                                                     ------->TEIL                                                                  <---------ANAC58                                                                  <---------ANAC55(1)                                                                  <---------ANAC46                                                                  <---------ANAC58                                                                  --------->ANAC55(2)                                             <---------ANAC58     <---------ANAC55(2)            <---                                             <---------ANAC58   <-----------GT1               <------      ------>ZmHOX2a(1)                    <-----------GT1   --------->ANAC58                 <------  <---------ARR14(2)             --------->WOX13(1)     --------->ANAC58 <---------TOE1(3)   <-------  --------->ARR14(2) <----------DOF2     <---------AHL20(2)  --------->ANAC58       ---------->DOF2-- ----DOF2  ---------->DOF2     ------------>CBF         --------->ANAC58 --------->MYB59     ========   gttgaatcctctataaagcttagctttctacttgtcaatctattttttcgtgcctactaagccaagttacgtatttaggttatttccaaagtaactcagg  14718500                  <---------ANAC58          <---------MYB52(1)         <-------GAMYB   <---------ANAC58   <---------ANAC58 --------->ARR11(3) -----P <-----------RAV1(1)                                                                        <- ---TOE2(2)   <----------DOF2                                <---------At4g35610                   <- ---TOE2(3)  <---------ANAC58                                --------->At4g35610                 <--- ----RAV1(2) <---------ANAC58--------->KAN4(2)         <---------ICU4                         <------ ------->MYB52(2) <---------ANAC58     ---------->DOF2<---------YAB1                          ------- ===================RAV     <---------KAN4(1)         --------->ICU4                 --------->ETT(2)   ttagttcttgctgttgctttgcttcgatgaataatctcacagaaagacgaagggtcatcatggagcagaacgagaaaacaagtctggtcgatagagtatt  14718600                              --------->GLK1(1)                             --------->ARR11(3)                         --------->YAB1              --------->ARR11(3)              --------->ARR14(2)          ---------->DOF2---------->DOF2                                                     <-------      --------->WOX13(1)<---------ATHB12                                           --------->TOE2(3) --------ANAC58    --------->TOE2(3)        --------->DAG2                   --------->ARR11(3) --------ANAC58<---------RVE1(1)          ---------->DOF2                    <---------ARR11(3) ------AHL20(2)<---------CCA1(1)  <---------HSFB2a(2)                  <----------DOF2 <---------YAB1 ---ARR14(2)  <---------ARR11(3)  --------->HSFB2a(2)                  --------->TOE2(3) <---------AHL20(2) -->ARR14(2) --------->YAB1  <---------ARR11(3)     ---------->ID1<----------DOF2  --------->YAB1   ttcttggtctatcaaagatattctcaataaagatttctacaaacaaaaggttttgttctcttctaactcttttctttaatatctatcttattattttgat  14718700                                                           <-------TEIL                                                           ------>ZmHOX2a(2)                                                         <---------ARR14(2)                        --                                                         --------->ARR14(2)                       <--                --------------->AGL15                    --------->AGP1                           ---                <---------------AGL15        --------->LBD16         ------->TEIL               -----               <-----------------AGL3        ----------->HVH21    <---------YAB1                -----               ======================================================================================               ----------------->AGL3      <---------LBD16<------ZmHOX2a(2)<---------YAB1     <------          <---------ANAC58    --------->At4g35610      ----------->ARR10<---------YAB1        <------ --YAB1   <---------ANAC58<-----------GT1 --------->MYB52(1)  <---------MYB52(1)          ------>ZmHOX2a(1)   atttagagattagcgtttctatattttgtaacagttgaagacagtaccggacaagtttagatccgttgatgaatattatcaatgttttgttcctcaccta  14718800   ---------->DOF2 ------->ATHB12                                                                              <------- -------------AGL15                --------->GLK1(2)                                        --------- ------------>AGL15                --------->ARR14(2)                                       --------- ->MYB46(1)                        <---------ARR14(2)                                   --------->ANAC58 ->MYB83                          <---------CCA1(2)            <---------ARR14(2)       --------->ANAC58 =============MADS_MADS    --------->ANAC58          <----------DOF2        <----------ID1 --------->WOX13(1) ---MYB111(1)              --------->ANAC58   <---------GLK1(1)--------->ARR14(2)   <---------------- ---MYB46(2)--------->MYB52(1)--------->TOE2(3)<---------ARR11(3)<-------TEIL   ---------->DOF2   ---   ctcattgaagcacataccgagttgttctcaagcctcaaatctgtatcgaaatctccttttgttcaaatacgttctatggagacaaagacgaagcaatcaa  14718900                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                    <---------ARR14(2)                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                                    --------->ARR14(2)                                                                      ------>MYB46(1)        <-------                                                                      ------>MYB83 --------->GLK1(1)   --------->At4g35610                     ----------->RAV1(1)       --------->ANAC46     <---------WOX13(1)   <---------At4g35610                  --------->ANAC58             --------->ANAC58<------ZmHOX2a(2) --ATHB12                             ---------->DOF2                --------->ANAC58--------->CCA1(2) >ANAC58                          --------->TOE1(3)                 --------->MYB46(3)------>ZmHOX2a(2) >ANAC58                          --------->TOE2(3)               --------->MYB52(1)--------->AGP1 -----WRI1                --------->YAB1--------->ANAC46       --------->ANAC58    <---------GLK1(1) ------>ALFIN1           <---------YAB1 --------->ANAC58       --------->ANAC58--------->ALFIN1 -----   gtggaagctcatcaaacaagttgttctatgatataacattaaaagccacagagagtttaagtgccaagtaccagccaaaatgtggagatctaattgcttt  14719000                                                                                --------->RVE1(1)        --------->ANAC58            <----------DOF2                      ------>ZmHOX2a(2)        --------->ANAC58        ------->TEIL                           --------->ARR11(3) ----DOF2                  <---------ANAC58                            <---------ARR11(3) --ANAC46                  <---------ANAC46                        <------MYB83--------->ARR11(3) --ANAC58                  <---------ANAC58                  <---------LBD16   <---------ARR11(3)<xxx --ANAC58               <---------ATHB12       <---------ANAC58    <------MYB46(1)              ----- ------>HVH21       <------ZmHOX2a(2)          <---------ANAC58   <---------AtMYB61           xxxxxxx   gacaatggataagccaagacggatcaatgacttgaaccctttacttcttgcctatgtattctcttcggatggtgatcttaaaatctctgttcatttgtct  14719100  Previous    Next  AGI:  At5g37150.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G52090.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37160.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69345.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69346.1); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 (PTHR10887:SF27); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); con Range:  from: 14718560    to: 14721792    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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