Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   xx                                                                                                  <xx                                                                                                  xxx                                                                                                  <xx                                                                                                  xxx                                                                                                  <xx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  <xx                                                                                                  xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                            ---------                                                                                            ------>NtERF2                                                                                           --------->ANAC46                                                                                          <---------MYB55(2)                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                       <---------ALFIN1                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <---------ARR11(3)xx                                                                                 --------->ARR11(3)xx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                              --------->AHL20(2)<xxxx                                                                              <---------AHL20(2)<xxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                            --------->AHL20(2) xxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <---------AHL20(2)<xxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         --------->AHL20(2)--------->ANAC58                                                                         --------->AHL20(1)------->GAMYB                   --------->ALFIN1                                      <---------AHL20(1)--------->ANAC58                   <---------ANAC46                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->ALFIN1                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->DAG2                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             ---------->DOF2                                   <---------TOE2(3)<---------CCA1(2)xxxx   <---------AHL20(2)              <---------YAB1    <---------YAB1     --------->AHL20(2)--------->MYB46(3)  --------->AHL20(2)             <-----------GT1   <---------ICU4       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2)     <------ZmHOX2a(2)     --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   taaattaaatatcagaaaagtgtgtggatcactatttactattcaaattttaaatattatcgattaatatttgaataaatttatatcttacacccgccta  14711300              xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <----------DOF2       ----------------->AGL2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <------NtERF2     ------>NtERF2     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC58   <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(fl3) >LBD16----------------->AGL1 xxxxxxsmallRNA(i) xxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(le3) xxxxxsmallRNA(le3) xxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(le3) xxxxxxsmallRNA(si3) xxxxxsmallRNA(le3) xxxxxxsmallRNA(le3) xxxxxxsmallRNA(si3) xxxxsmallRNA(fl3) xxxxsmallRNA(le3) xxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxsmallRNA(le3) xxsmallRNA(le3)              <---------ICU4 xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xsmallRNA(le3)          --------->AHL20(2)                      ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(fl3)                                --------->ANAC58 xxxxxxxsmallRNA(i)      <---------AHL20(2)                    --------->ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(1)  <---------HSFB2a(2)          --------->GLK1(2)   aataggcgggccttatctagtatctatataaataaggacttatagagacttattccataagactcaagaaagacataagagagaatcgagagaggtttaa  14711400                                                           <-----------RAV1(1)                                                    ---------->DOF2                                                 --------->YAB1                                              --------->YAB1             --------->ARR11(3)--------->ATHB12 <---------YAB1              <----------DOF2     <----         ---------->DOF2      <---------YAB1 <---------ATHB12      <----------DOF2              -----   gagagttgttctaaagacctagagatttagttttgattagtttctaaatcataataaagaaatgttgctctttattctcttttgttcttgaatcacatct  14711500                                                                                                  <--                                                                                                  <--                                                                                         <---------ANAC55(2)                                             <------MYB46(1)                             --------->ANAC55(2)                                   --------->ATHB12                                      <---------ANAC58   --------->WOX13(1)        <------MYB83 <XXXXXXXXXXXXXXXXXXXXMIR845A              <---------------AtSPL3 <---------ATHB12            <------MYB46(1) <------MYB83                    --------->ANAC58     <-- -----HSFB2a(2)              <---------DEAR3(2)                              --------->ANAC58  <----- ---->HSFB2a(2) <-----------HVH21 <---------YAB1                         --------->ANAC46<---------ANAC58   cgaatcattcagagactaagtcagagcaagtcggttttgatttgagttggtatcagagcttaagttgcagactctaggcaagacatgtagtacgtgactt  14711600            <---------ANAC46         --------->TOE2(2)            <---------ANAC58         --------->TOE1(2)            <---------ANAC58  ------->GAMYB                  <---------TOE1(2)  --------->ANAC58           --------->MYB46(3)   --------->GLK1(1)  --------->ANAC58        --------->MYB46(3)   ------------>CBF -------ANAC58          --------->ANAC46 <------ZmHOX2a(1)  --------------------->WRI1 -------ANAC46<------NtERF2 --------->ANAC58  --------->ANAC46                                 <----- -------ANAC58------>NtERF2 --------->ANAC58  --------->ANAC58                              <-------- -----DOF2 <-----------------------TaNAC69(2) --------->ANAC58                             <---------   tcgtaagcaagatggcggacaaaaatccacaaccaaaaaccaaggacctcgcaattccattcccatgttgacatcgacaaactacatggtttgggcgatg  14711700                                                      --------->At4g35610                                                      ----------->RAV1(2)                                                      <---------At4g35610                                                    ------>ZmHOX2a(2)                                                   --------->ARR14(1)                                                   <------ZmHOX2a(2)                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                                  <---------ARR11(3)                                                 ==================HOX2a_HOX2a         <---------ANAC58                        <------ZmHOX2a(1)                     <---------ANAC58         <---------ANAC58                      --------->LBD16                         <---------ANAC58        <-------TEIL                          <---------LBD16                     <---------DEAR3(1)       --------->ALFIN1 --------->ZAT14     <------ZmHOX2a(2) ---------->DOF2     <---------AtMYB61 ----ANAC46     --------->LBD16          ------>ZmHOX2a(2)  ------>ZmHOX2a(2)     --------->ALFIN1 -DEAR3(1)<----------DOF2        *TSS----------->HVH21--------->LBD16       --------->ALFIN1 ------------WRI1       <---------ZAT14  ===============HOX2a_HOX2a       <---------bZIP60(2)      <-   tgaatcaaggtgcttctccgagttagtgaagtatgggatgtgatcgatccaggatccgctgatccaaagagaaacgatgtggcgatggtgcttctcttcc  14711800       ---------->DOF2                          <---------ATHB12                       --------->ZAT14      ------>ZmHOX2a(1)                  --------->ANAC58                              <---------ZAT14    ----------->RAV1(2)                  --------->ANAC58                              --------->ZAT18   <------ZmHOX2a(2)                     --------->ANAC46                           <---------ANAC46  <---------ARR14(2)                     <----------ID1                      ------>NtERF2 --------ATHB12                  --------->At4g35610 <----------DOF2        --------->ANAC46 <-------   aatcgatcctgaagccctaatacttcaaatcggtgagcaaaacacgacaaatcaactttgggacaccatcaagtctcgacaccatggagtagactgggtg  14711900                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                     <---------GLK1(1)                                                                                     --------->GLK1(1)                                                                                    <---------ARR11(3)                                                                                    <---------ARR14(2)                                                                                    --------->ARR14(3)                                                                                    <---------ARR14(3)                                                                                    --------->ARR11(3)                                                                                    --------->ARR14(2)                --------------->AGL15                                           ---------->DOF2                <---------------AGL15                                        --------->LBD16               <-----------------AG                                         <---------ANAC58               <-----------------AGL1                                       <---------LBD16               ----------------->AGL2               <----------ID1          <---------ANAC46       --  --------->ANAC58                        <---------TOE2(3)                 <---------ANAC58     <---  --------->ANAC58  --------->MYB52(1)   <---------DOF5.7(2)     ----------->HVH21----------->ARR10<- --ANAC46     -------->P                --------->WRKY12   --------->YAB1  <---------LBD16      <----   aaggaagcaaggcttcaacccctaatggcaagtctagacaagttgacgatgagggagacaaacacaattgacgagtttgcgggaaagatctccagtatcg  14712000                            ------>ZmHOX2a(2)                                                   <----                           <---------------------WRI1                                           <---- ------->At4g35610      <---------YAB1                                                         ------ ------RAP2.6(2)      --------->At4g35610            --------->AHL20(2)                    <---------REM1(1) -----NtERF2          <---------At4g35610  ----------->GT1                            --------->YAB1 -----LBD16--------->At4g35610        ---------->DOF2<---------AHL20(2)          <-------TEIL  <-----   cggctcaatcggcatctctaggggagatgatcgatgaaacaaaagttgtgaataattttttgaagggacttccaagaaccaagttcattcatattgtagc  14712100                                                                                  ----------->GT1                                                                                 <-------------------                                                                               <------MYB46(1)                                                                               <------MYB83                                                                              --------->MYB111(1)                                                                             <--------P                                                                             --------->ALFIN1                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                       --------->ARR11(3)           --------->ARR11(3)                                          --------->ARR14(2)           <---------ARR11(3)                                   --------->At4g35610    --------->GLK1(1) <----------DOF2                                      <------ZmHOX2a(1)<---------ARR14(2) -----ANAC58                                          ==========================HOX2a_HOX2a -----ANAC58         ---------->DOF2              <---------ANAC46     <---------ARR11(3) --->At4g35610     --------->TOE2(3)     --------->ARR11(3)<---------TOE2(3)<---------MYB52(1) ----At4g35610     --------->TOE1(3) ---------->DOF2  =========================HOX2a_HOX2a  ---------   ttcctttgaacaagttcttaacctaaagtcgatgggattcaaagacattgttgggaggattaaggcatatgaagatcgggtagggggagaaacccaaagt  14712200  Previous    Next  AGI:  At5g37145.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.9e-29 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) Range:  from: 14711733    to: 14713337    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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