Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <<<<<<<<<TBF1                                                                <---               <----------DOF2                                                                   ----           <---------ALFIN1                                                                     <----           ------>NtERF2                               --------->AHL20(2)                       -----      <---------ARR14(2)                       <---------TOE2(3)                                <----      --------->ARR14(2)                     --------->MYB52(1)                      ---------->DOF2 ----DOF2 --------->LBD16                 <---------ICU4<---------AHL20(2)---------->DOF2---------->DOF2   gttctcaaaatcccgacctttcttcttccccatgcgaaaaatcaacattacggtttattaaatctctcttgaaataaaaagaaacacaaaagaaagtaat  14707300                                                       --------->MYB52(2)   <---------AHL20(2)                                 <-------TEIL         <------------CBF   --------->AHL20(2)                         ----------->HVH21    <---------ICU4 ------ICU4                     <---------AtLEC2 <---------bZIP60(2)  --------------->AGL15 ----->ATHB12             <----------DOF2 <---------ZAT14          --------->ZAT6 -----ATHB12              <---------DAG2  --------->ZAT14       --------->YAB1 ---->ICU4                ============================bZIP_DOF<---------WOX13(1) -----YAB1        ------->TEIL<---------YAB1<---------TGA1a --------->ATHB12                     ----   gatttttaaatgcaactctgtatgtagactttatgcatgagaactgaagtgacatgttcgtttcattgatcactacatattggaatctaaataaactttt  14707400                          <---------ANAC58                                  <---------ANAC58                          <---------ANAC46                      <-----------RAV1(1)                          <---------ANAC58                   --------->ARR14(2)                     <---------GLK1(2)                       --------->ARR11(3)                     <---------ARR11(3)                      <---------ARR14(2)                   ----------->ARR10                         <---------ARR11(3)                   <---------TOE2(3)             --------->ARR11(3)         <---------ANAC58               --------->YAB1  ---------->DOF2   <---------ARR11(3)      <----------DOF2 ------------    ------------>CBF --------->ARR11(3)     --------->AHL20(2)--------->CCA1(2)          ------------ ------>DOF2  --------->AHL20(2)   ----------->GT1<------ZmHOX2a(2)     <---------DAG2   <-----------   aaagaaaacaattccattaataagattttcttggaaagtgtcaaaatttaagatcatgctcaagatatgttggacctttcgtcttcgtcttcccttataa  14707500                                                                                  <----------DOF2                                 --------->ZAT14                                 <---------ANAC58                                 <---------ZAT14                                 <---------ANAC58                               <---------GLK1(1)                           <---------AHL20(2)    --------->WOX13(1)         --------->GLK1(1)   <---------CCA1(2)      --------->AHL20(2)  ------------>CBF   <---------ZAT14  <---------At4g35610         ------>ZmHOX2a(1)         --------- ----->AG            <---------ZAT18  --------->At4g35610      ---------->ID1<------------CBF --->AGL15           --------->ZAT14  --------->ZAT2       <---------ANAC58--------->AHL20(1)<------- ----AGL15           --------->ZAT18  <---------ZAT2       <---------ANAC58--------->AHL20(2)<-------   gtagaccaattagatagtgagagttcacttcggagttcagagctgtcttcttcatctcttgtcttgtcctctaaaaaaaaattgctttcttcttgtcgtt  14707600                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--        <---------ANAC58                                                                          <--        <---------ANAC46                                                           --------->HSFC1(2)    <---------ANAC58               <-------TEIL                                    <---------HSFC1(2)    <---------ANAC58          <---------AHL20(2)                              --------->ANAC58   <---  <-----------GT1             <-----------GT1                                 --------->ANAC58   ----  <---------AHL20(2)     <---------MYB59--------->HSFB2a(2)            --------->AtMYB61         ---- ->ID1  <---------ANAC58--------->ANAC55(2)                         --------->AtMYB61      <---------ZAT14 --ANAC58               <---------ANAC55(2)          <---------CCA1(2) --------------->AGL15   <----- --ANAC58             <-----------GT1   <---------HSFB2a(2)        --------->MYB46(3)      --------->ZAT14   ctattttcttgcttgtaaaccaagttacctatttacattcgtctagatcgatgtcttatcttgaaatggaccaccaattcaaggaaacttcacttcagtt  14707700                             <<<<<<<<<TAC1                           <---------ALFIN1                           --------->ZAT6                          -------->P                          ------>MYB83                               <---------ALFIN1                        --------->AtMYB61                     <------NtERF2                        ------->GAMYB                        <---------RAP2.6(3)                       <---------MYB52(2)                    ------>NtERF2        ------>ZmHOX2a(1)----------->RAV1(1)                 <------NtERF2 -------->ID1          <---------MYB55(2)                   --------->RAP2.3(3) -------ANAC58         --------->MYB46(3)                   --------->DEAR3(1)                    --- -------ANAC58        --------->ANAC58                      --------->ATERF1(2)                   <-- ----MYB46(1)         --------->ANAC46                      --------->RAP2.3(2)            <--------- ----MYB83            --------->ANAC58                      <---------ATERF1(2)      <---------ZAT14 -------ANAC46       ------->GAMYB           <----------DOF2--------->RAP2.6(2)      <---------ZAT18 ------AtMYB61      --------->MYB46(3)    --------->ANAC58 --------->RAP2.3(1)       --------->ZAT18 ----->MYB111(2)  <-----------GT1 --------->ARR14(2)       --------->ATERF1(1)--------->YAB1  <------ZmHOX2a(1) ----->MYB46(2) --------->AHL20(2)<---------ARR14(2)      <---------ATERF1(1)<---------ATHB12-------- ----MYB52(1) ------->TEIL------>MYB46(1) --------->ANAC58------>NtERF2--------->ANAC46  <----------DOF2   tggtgttttcctcatgaatttaacaaccaacactcgaatttggaacgctttgcacaacgaggccgccaattccaccctaatcaagagtgtgcttcaggaa  14707800         <---------ANAC58         --------->ANAC55(2)                                                    <----------DOF2         <---------ANAC58                                                 --------------->AtSPL8         <---------ANAC46                                                 --------------->AtSPL3         <---------ANAC55(2)   <---------AHL20(2)                 <---------ANAC55(2)      <---------MYB52(1)      <---------AHL20(2)                  --------->ANAC55(2) ------>ARR14(2)         <----------DOF2                          ----------->GT1 -------ARR14(2)      --------->GLK1(2)                  --------->YAB1 --------->ARR11(3) --RAV1(2)        --------->YAB1          --------->TOE2(3) --------->AHL20(2)------->TEIL        <-- ->LBD16<-------TEIL --------->YAB1 <-----------GT1     <---------YAB1  <---------ARR11(3)     ------   aatactctggtacgtgataacaataatctttttttattttacattcttaaaactgttgatcataaaatatgtaatatctgtactttctctcttcgtagca  14707900                             --------->ANAC55(2)                             <---------ANAC55(2)                        <---------ANAC58                           <---------ZAT14                     ------->GAMYB                           --------->ZAT14        <---------YAB1        <---------ANAC58<---------At4g35610 -------ICU4              <---------MYB52(1)<---------YAB1  ----------->RAV1(1)     --------->ALFIN1 --->YAB1         <---------YAB1  <---------WOX13(1)        --------->MYB52(1)  ---------->DOF2    --   taatcacatagttttgttttatgcttcagttaagtgatagatagttatgcttatgtttcagacaacagaacaatgcgtttgtgaaagtggtgctcatggt  14708000                           <---------At4g35610                       --------->TOE2(3)                           --------->LBD16                      --------->ZAT2--------->ANAC58                       --------->ARR14(2)                       <---------ZAT2--------->ANAC58                       <---------ARR14(2)                       <---------At4g35610               --------->AHL20(1)                               --------->At4g35610               --------->AHL20(2)                          --------->YAB1   --------->CCA1(2)               <---------AHL20(1)                  --------->ZAT2    <----------DOF2          -------          <---------ANAC46 --------->At4g35610     --------->At4g35610   <---------TOE2(3)    -------          <---------YAB1--------->SPL7             <---------At4g35610   <---------YAB1   --------->YAB1 --------->HVH21       <---------MYB52(1)         --------->GLK1(2)------>NtERF2<------ZmHOX2a(1)<---   tctgaccgtgttacgaatataatccgttccgctaaattgaactcttcacaagaagctgcaatcttgagctgccttaagataaggaactgtaatcacaagc  14708100                         --------->LBD16                         ------>ZmHOX2a(1)                        <-----------------AGL1                                                <------                       ----------->RAV1(2)                                                   <-------       --------->At4g35610                                                       <---------At4g35610       <---------At4g35610                                                       <---------ZAT2 <---- -->ANAC58        <---------PCF5                                                 --------->At4g35610 -->ANAC58 <---------ARR14(2)                                               <---------At4g35610 <---- ------ZAT14--------->CCA1(2)           ---------->DOF2       <----------DOF2    --------->ZAT2 <----   acagtgtgaagctgatatggggacctcctggtactggcaaaacaaagacggtcgctactcttctcttttgccttcttaagctaagctgcaaaacagttgt  14708200  Previous    Next  AGI:  At5g37140.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37150.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G52090.1); similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69345.1); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 (PTHR10887:SF27); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain P-loop containing nucleoside triphosphate hydrolases (SS Range:  from: 14707666    to: 14710081    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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