Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ------>ZmHOX2a(2)                                    --------->GLK1(1)                                    <------ZmHOX2a(2)                                    <---------GLK1(1)                                   --------->ARR11(3)                                   <---------ARR11(3)                                   --------->ARR14(2)                                   --------->ARR14(3)                                   <-----------ARR10                                   <---------ARR14(3)                          --------->ANAC58                          --------->ANAC58                                                    <------                          --------->ANAC46                                         <---------AHL20(2)     ------>ZmHOX2a(1)  ---------->DOF2                                            --------->ATHB12 >ANAC58             <-----------HVH21  <---------ALFIN1                          <---------AHL20(2) >ANAC58          <----------DOF2  <---------ARR14(2)    <----------DOF2          --------->AHL20(2) >ANAC46     <----------DOF2    --------->YAB1   <---------At4g35610           --------->ATHB12   tcgactcctctaggcctttcctttgtcaaagcaataagatctccacattttggctgatacttttctctaatactcaatgcatcatttattgacatatcgt  14653800                                                                                                 <---                                                                                                 ----                                <----------DOF2                                             <--------                     <---------ALFIN1           --------->ANAC46                     --------->CCA1(2)                <---------HSFC1(2)              --------->ANAC58         <----------DOF2    <--------                --------->HSFC1(2)              --------->ANAC58  --------->CCA1(2) <---------ARR11(3) ---ANAC46      --------->At4g35610 <---------YAB1           ---------->DOF2        --------->ARR11(1)   agaacaacttgtttgataagcttccacttgattcctttgtcattgtctccaaggaactaatttcaaagagatgagcttttgacaaagatttgaagcttgt  14653900                                                            ------->GAMYB                   ------>ZmHOX2a(1)                       --------->ANAC46 ------ZAT18   --------->ARR14(2)                        --------->MYB52(1) ----->ZAT18   <---------ARR14(2)                        <---------DOF5.7(2) -ANAC58    <---------ANAC58    <------ZmHOX2a(1)     --------->TOE2(3) -ANAC58    <---------ANAC58  <---------------AtSPL8--------->ICU4                   <----------DOF2-   ggacaactcggttcgcgtttcctccagtagatgaggaacaaaacacttcaagtattcattaacggaactaaacttgtctggtatagtctttatctgttac  14654000                                                                                              <------                                                                                             ------>ZmHOX2a(2)                                                                                           --------->AGP1                                                                                           <---------ARR11(3)                                                                                           --------->ARR11(3)                                                                                     --------->REM1(2)                                                                                  <---------AtLEC2                                                 <---------ATHB12                 <---------ANAC58                                                <---------TOE2(3)                 <---------ANAC58                                             <---------MYB52(2)                   <---------ANAC46   --------->YAB1                       <-----------HVH21     ---------->DOF2<----------DOF2<------ZmHOX2a(2) -------->YAB1  <---------YAB1       <---------ICU4      ----------->GT1    <---------DAG2<---------GLK1(1)   aagaataatagactattgattatagctataagtctctaaacatgtcaactaatgaagaaaggttaaaagaaatgaaaaccttttgcttgtagagatcttt  14654100                     --------->ANAC58      --------->ARR11(3)      <---------ARR14(3)      --------->ARR14(3)      <---------ARR11(3)      <-----------ARR10   --------->ARR11(3)                           <----------DOF2      --------->ARR14(2)  <---------ARR11(3)                     <---------YAB1      <---------ARR14(2)  --------->AHL20(1)                     <---------ATHB12          <---------     --------->RVE1(1)    <---------AHL20(1)              <---------ANAC58     --------->WRKY45     --------->CCA1(1) --------->AHL20(2)                 <---------ANAC58   <----------DOF2    ----- ----DOF2            --------->ANAC58              <-----------GT1 <---------GLK1(2)   <----------DOF2   gttgagaatatcttccatagaccaagaaaatattctatcaagtagacttgttttctcgtttcgttccatgattctttcactttgactaactttctttcct  14654200                                <-------TEIL                             <------MYB83                             ----------->GT1     <---------ARR14(2)                             <------MYB46(1)     --------->ARR14(2)                            <---------------AtSPL8                            --------------->AtSPL8                          <------------CBF     --------->ANAC58                  --------->ANAC58     <---------AHL20(2)  ----------->GT1                         <-          ---------->DOF2--------->ATHB12      --------->ANAC58            ---------->DOF2    <------ -DOF2<----------ID1  ---------->DOF2  ----------->TBP    --------->ARR11(3)                  ------- ->ZmHOX2a(1)     --------->ANAC58   ----------->TBP      <---------ARR11(3)             --------->ARR11(3)   gcaagattaagacaaagaagaagcaaaagattggtacatatataaaaacaagaaccgagagatgttaatagctctcttaaagaagtcgaaaggtctagct  14654300                                                    <---------YAB1                                                   <---------AHL20(2)                              --------->HSFB2a(2)  <---------AHL20(1) --------GLK1(2)              <---------HSFB2a(2)<---------YAB1 ---STY1(2)           <-----------GT1    --------->TOE2(3)                   ----------->GT1 -->STY1(2)        <-----------GT1    <-----------GT1               ---------->DOF2    --------->YAB1   agaatttgaagagtttttttttttctacagttccagtaatttacattaactattattttttaaaaacaaaaaaagaagttggagaaaaatgagaatacca  14654400                       ------>ZmHOX2a(2)                     <---------AGP1                     <---------ARR14(2)                     --------->ARR14(2)                     --------->ARR11(3)                     <---------ARR11(3)                <------------CBF                                                               ------              <---------MYB52(1)                                                               ------             <-------GAMYB                             <---------AHL20(2)        --------->ZAT14    -           <-----------------AGL3                      <---------YAB1<-----------GT1           ------ <---------CCA1(2)  <---------CCA1(2)                  --------->AHL20(2)        <---------ZAT14  ---   cttctatcttcggtctgttattggatcttagtctaatacagtaatctatctatacatataattagagagtttttctctccatctacagtgtccatctaag  14654500                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   --------->AHL20(1)                              <-----------GT1                                     --------->AHL20(2)         <---------YAB1      <---------AHL20(2)                                   <---------AHL20(2)       <---------AHL20(2)    --------->AHL20(2)                            --------->AHL20(2)      --------->AHL20(2)<---------AHL20(2)                                --------->AHL20(2) --->ANAC58            --------->AHL20(1)                                 <---------AHL20(2)    ----- --->ANAC46            <---------AHL20(1)                             <---------AHL20(2) ----------->GT1 -------->ZAT6         --------->AHL20(2) <---------At5g28300         --------->AHL20(2) <---------ANAC55(2) --->ANAC58            <---------AHL20(2)<-----------GT1   --------->At4g35610 --------->AHL20(2)<--- -------->RAV1(1) --------->AHL20(2)<-------TEIL           <---------At4g35610--------->AHL20(2)<----   caacactatttattatacacttaaataaaatttaaacattcatttactgcatatttatgtcatctaaaaattttaaataaataaaaaaattatgtaaaat  14654600                                                            <---------AHL20(2)                                                            --------->AHL20(2)                                                           --------->AHL20(2)                                                           --------->YAB1                                                        <--------HAHB4                                                        --------->ATHB51                                                        --------->YAB1                                                        <---------ICU4                                                        -------->HAHB4                                                       <---------YAB1                                                       --------->ICU4                                                       --------->AHL20(2)                                                       <---------ATHB51                                                     <---------ICU4                                                    <---------YAB1                  ---------->DOF2                   --------->ICU4            --------->AHL20(2)                    <---------ICU4           --------->YAB1                        --------->ICU4                                 -----         --------->AHL20(2)                      <---------YAB1                  <---------AHL20(2)      ----------->GT1 --------->ARR11(3)       --------->YAB1                    --------->AHL20(2)     ----------->GT1  <---------ARR11(3)  <---------YAB1<--------ATHB1  ----------->GT1   <---------YAB1 ---->AHL20(2)   <---------AHL20(2)    <---------AHL20(2)  <---------AHL20(2)--------->ICU4--------->YAB1 ------AHL20(2)  --------->AHL20(2)    <---------YAB1--------->YAB1 <-----------GT1     --------->YAB1 -----AHL20(2)--------->YAB1        --------->ICU4--------->YAB1  <---------AHL20(2) <---------ICU4   aaatgagatgttaaaataataaaagataatgctatgaaatttttattagtaataataataattaaaattttaacaggtaaaaattaaaaattatcataca  14654700  Previous    Next  AGI:  At5g37030.1    Description:  tRNA-splicing endonuclease positive effector-related. similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT5G37150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69347.1); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1 (PTHR10887:SF27); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) Range:  from: 14651844    to: 14654169    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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