Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ICU4                            <---------At5g28300      <---------YAB1                            <-----------GT1        --------->YAB1                        <----------DOF2           <---------YAB1                     <---------YAB1             <---------CCA1(2)  <---------YAB1                --------->YAB1                --------->YAB1     --------->YAB1                <---------ICU4               <---------YAB1      <---------ICU4                <--------HAHB4             --------->YAB1       <---------YAB1             --------->YAB1<-----------GT1 <---------ICU4     --------->YAB1            <-------TEIL------>ZmHOX2a(1) <---------YAB1   <---------CCA1(2)     ------->GAMYB<---------YAB1          --------->ICU4 --------->YAB1 ----bZIP60(1) --------->ICU4           --------->YAB1<---------ICU4 --->bZIP60(1) <---------YAB1        --------->WOX13(1) <---------YAB1<---------YAB1                -   tcatcaacagcatattcatcattatccttttaccctcatcagtcatcatcatatcattatcatatcatcatcactataacagaaaatttcaaacattttc  14557100                                                                                --------->CCA1(2)                                                                               --------->AGP1                                                                               --------->ARR14(2)                                                                               <---------ARR11(3)                                                                            <---------HSFB2a(2)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                       ==========================HOX2a_HOX2a                                                                       <------ZmHOX2a(1)                                                                  --------->LBD16         ===========                                                                <---------LBD16<---------ARR14(2)      <---------YAB1                                   <----------DOF2 ================HOX2a_HOX2a      --------->ICU4                          <-----------GT1 <---------ARR14(2)=====================    --------->YAB1                  ----------->GT1<---------ALFIN1<------NtERF2<------ZmHOX2a(2)   < -------->ZAT6                    ---------->DOF2--------->AtMYB61<---------RAP2.6(3)     ------>ZmHOX2a(2)   ttacactcatgattctaaatttcgaatcaaatttcagaaagaaaaaaaaaacctcacctttgagtagccggaaggattcgagatccaagtgatccactaa  14557200                                                                                        <----------DOF2                                                                                     <-----------ARR10                    XXXXXXXXXXXXXXXXXXXX>MIR415                                      <---------ARR11(1)                    <----------ID1                                                   <---------ARR11(3)        ------>ZmHOX2a(1)                                                            --------->ARR11(3)      ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)     <------ZmHOX2a(2)                                                           ===================HOX2a_HOX2a    --------->ARR11(3)                                         --------->ANAC58 --------->ARR11(3)    <---------ARR14(2)                                         --------->ANAC58 <---------ARR11(3)    --------->ARR14(2)                                         --------->ANAC46--------->YAB1 ==============HOX2a_HOX2a                ----------->GT1  <----------DOF2  ---------->DOF2 ==============HOX2a_HOX2a   --------->YAB1    ---------->DOF2 --------->ANAC55(2)  <---------CCA1(2) ---------LBD16  ---------->DOF2       ---------->DOF2     <---------DAG2 <---------ATHB12   ------>ZmHOX2a(1)   ttttcggatcctgaacaaaaaaagaacaaaatcagaacatcaaaagataaaaagactgaaactttacgaaacccaaatcaaagatcatatctttcctatt  14557300             <-------TEIL            --------->ARR14(1)            --------->CCA1(2)           <---------GLK1(2)           --------->ARR11(1)           --------->ARR14(2)           <---------ARR14(2)         ----------->ARR10                 --------->AHL20(2)     --------->YAB1                     --------->AHL20(2)    <---------YAB1                      <---------AHL20(2)   <---------ARR11(3)                  --------->AHL20(2)   --------->ARR11(3)                  --------->ICU4  --------->YAB1              <---------DAG2--------->AHL20(2)           --------->ARR14(2) --------->ICU4            --------------->AGL15                         <---------ARR14(2)        <- <---------ATHB12          <---------------AGL15 --------->MYB52(1)   <---------ANAC46    <----------ID1   ccaatgatcataagattcgatttcaatgtccaatttttgtaataaataaaaaaacgaaaacgactcactgggtcgtatttgaagactgtaacgagacaaa  14557400                                                                           --------->At4g35610                                                                           *TSS                                                                      ----------->RAV1(2)                                                                     ------->TEIL                                                           ------->GAMYB   <---------ZAT2                                                          <---------MYB52(2)                     <---                                                         --------->At4g35610                    <----                                                         <---------At4g35610                  <------                                    <---------ANAC58   <---------WRKY38(1) --------->ZAT2     -------         ----------->GT1            <---------ANAC58   <---------WRKY12    <---------At4g35610------- ---------ID1    --------->TOE2(3) <-------TEIL --------->YAB1    <---------ATHB12         ----------   aaaaacaaaacttgaaaattcttaaatagagaacatgttcgtgttcgtaagaataagtcaactcaccaatgagcctgagctggagacaacgctgagaatc  14557500                                                                                                 <---          --------->ARR14(2)                                                                     <---          <---------ARR11(3)                                                                   <-----          --------->ARR11(3)                                                              <---------AHL20(2)          <---------ARR14(2)                                                              --------->AHL20(2)         <---------GLK1(1)                                                                <---------AHL20(1)         --------->GLK1(1)                                   <---------YAB1              --------->AHL20(2)       <------ZmHOX2a(1)                                     <---------AHL20(2)          <---------AHL20(2) ------LBD16       <---------YAB1                       <----------DOF2               <---------ICU4 -----LBD16       <-----------GT1                      <---------DAG2                 --------->ATHB51 ---ARR14(2)  ------>ZmHOX2a(1)                     <-----------GT1    ------>ZmHOX2a(1)<---------YAB1 -->GLK1(2)<------ZmHOX2a(2)                     <---------ICU4  <---------ICU4       <--------HAHB4 -->ARR14(2)------>ZmHOX2a(2)                   --------->ICU4<-----------GT1        <---------YAB1 ->ARR10----------->ARR10   <---------MYB52(1)--------->TOE2(3) <---------YAB1       --------->ICU4   ggggaagaaggagatcctattttcattttcgttttttttttttttttgccttaattacctttttttattattcctcgttttttgttcattattaaatttg  14557600                                                                           <---------ANAC58                                                                 <---------------AtSPL8                                                                 <---------------AtSPL3               ------>MYB46(1)                                   --------->ALFIN1               ------>MYB83                                     <---------ZAT14       <---------At4g35610                                      --------->ZAT18       <---------ZAT18                                         --------->ALFIN1       --------->At4g35610                                   <---------ANAC58  --------------------->WRI1                         <---------ANAC58      <---------ANAC58  <---------ANAC46                                   <---------ANAC58    <---------ARR14(2)  <---------ANAC58    <-----------GT1                <---------bZIP60(2) --------->ARR14(2)  <---------ANAC58  <----------TaMYB80               <---------ANAC46--------->SPL7 ------ANAC58<---------MYB111(1)                  ----------->HVH21<---------SPL7 ------ANAC58<---------MYB111(2)               ------->TEIL  <---------ANAC58               <-------- ------GT1   <---------MYB46(2)           <---------AtLEC2   <---------ANAC46              <---------AHL20(2)   cctgccttgtgctcacctacttatatacccttccatagtatttggcatgaacgtgacttggtagagtgtggtacggttcttgtctcggactatttaagta  14557700                      <---------ANAC55(2)                      <---------ANAC55(1)                      --------->ANAC55(2)                      <---------ANAC58                      <---------ANAC58                    --------->MYB52(1)                 --------->ANAC58                 <---------ANAC55(2)                 --------->ANAC55(2)                 --------->ANAC55(1)                 --------->ANAC46         ----------->GT1     --------->ARR11(3)                            ------->TEIL   --------------->AGL15<---------ANAC58     <---------ARR14(2)                   <---------ALFIN1        <---------------AGL15<---------ANAC58     --------->ARR14(2)                <---------PCF5            ----------------->AGL3<---------ANAC46     <---------ARR11(3)        --------->ATHB12 <---------YAB1 --------->GLK1(2)      <-------TEIL     <---------GLK1(2)<---------ANAC46<---------ZAT18       <---------ANAC55(2)     <-------MYC3 -------AtSPL8   --------->ANAC58     --------->ZAT18       --------->ANAC55(2)     ------->MYC3 ----   cgatgcagattttgtaaaaacgtaacgtgtttttgatttgtggaccacttatgaatcttatcaagtatctaaaattagacatttcatgtgcgtagatgtc  14557800                                                                              <---------ANAC46                                                                         <---------ICU4                                                                         -------->HAHB4                                                                        <---------ATHB51                                                                      <---------ICU4  <---------ANAC58                                                   --------------->AGL15  <---------ANAC46                                                   --------->ICU4  <---------ANAC55(2)                                               <-----------------AGL2  <---------ANAC58                                                  <-----------------AGL3  <---------ANAC55(1)                                        <---------AHL20(2)  --------->ANAC55(2)           --------->ARR11(3)     <------ZmHOX2a(1)--------->ICU4  ----------->GT1 ----->WOX13(1)    <---------TOE2(3)                   --------->YAB1<---------------AGL15 <---------AHL20(1)   aattacttgtttctaagaattaagaaacatataagttattgtttctgaaatcgtgtaggataatttatctactaattatggagtattgtatagtatattt  14557900                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                               ------                           ----------->GT1                                                    <------                       --------->ARR11(3)             --------->LBD16                         <------                       --------->AHL20(1)            <-----------RAV1(2)                     <-------                 --------->ANAC46                  ------>MYB83                        <---------AHL20(2)    --------->ANAC46   <---------AHL20(1)          ------>MYB46(1)       <---------MYB52(1) <--------   ggattcaaacaactcatttacgaaaaatattgaaaattcaaaattagtctaccttccaggttatcaagttcgaccgctagtcaattgattttttttaacg  14558000  Previous    Next  AGI:  At5g36880.1    Description:  acetyl-CoA synthetase, putative / acetate-CoA ligase, putative. similar to acyl-activating enzyme 17 (AAE17) [Arabidopsis thaliana] (TAIR:AT5G23050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49143.1); similar to acetyl-CoA synthetase [Solanum tuberosum] (GB:CAA67130.1); similar to H0502B11.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66525.1); contains InterPro domain Acetate--CoA ligase; (InterPro:IPR011904); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 14551930    to: 14557475    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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