Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------->TEIL                                 --------->ARR11(3)                                 --------->ARR14(2)                                 <---------ARR14(2)                                <---------CCA1(2)                              --------->ALFIN1                           --------->LBD16 -------->GLK1(2)         <---------ANAC58                                            =============== ---------YAB1            <---------ANAC46         --------->GLK1(2)                  ------>ZmHOX2a(2) ------->KAN4(2)          <---------ANAC58        --------->ARR14(2)                <---------ARR11(3) -------GLK1(1)          <---------LBD16          <---------GLK1(2)                 --------->ARR11(3) ------ARR14(2)       <---------ANAC58 <---------ANAC58                          <------NtERF2 ----->ARR14(2)       <---------ANAC58 <---------ANAC58                  <---------ALFIN1   atattcttggtccaagttgcataggcttgcgggtgtatcttgggtacttagagattctctgagtaatgtagttctccacagtcgtcgatcttattctcaa  14288200                      <------ZmHOX2a(2)                      ==================HOX2a_HOX2a                     <---------ARR11(3)   <---------At4g35610                     --------->ARR11(3)   --------->At4g35610                  <---------YAB1               <---------At4g35610        <---------ZAT2                       <----------DOF2      =======================HOX2a_HOX2a  <-------GAMYB                   ----------->GT1      ------>ZmHOX2a(1)                  <---------MYB46(3)              --------->DAG2      -------- ============HOX2a_HOX2a         <------ZmHOX2a(1)                      ---------->DOF2      <-------   gttgtgtccttgtttgaagctaagatcaagagctaggaatgggcagttgagagtatgaagagtttacatgttcaaaaagtgatttttggagccactacaa  14288300                                           --------->YAB1                                          <---------ATHB12                              <---------ARR14(2)                                                <----                              --------->ARR14(2)                                             <------MYB83                             <------ZmHOX2a(1)                                               <------MYB46(1)       --------->YAB1        --------->ATHB12                                                <-------  <---------ARR11(3)       <---------TOE2(3)         <---------GLK1(2)     <---------ANAC46<---------WOX13(1)  --------->ARR11(3)      --------->MYB52(1)   --------->ANAC46       <---------ICU4 --------->ATHB12 ->ZAT14       --------->AtLEC2       <---------ATHB12            --------------->AGL15  --------->ATHB12 --ZAT14---------->DOF2 --------->TOE2(2) <---------ATHB51       <-----------------AGL2<---------WOX13(1)   tggagataatcaaagccctgcataaacctaaggattggccatcaataataagtcacattctcccaatgctagttatggctgatggaatgactgattggtt  14288400                 <---------ANAC58                 <---------ANAC58                <---------MYB46(3)             ------>MYB46(1)             ------>MYB83                                                            --------->At4g35610             --------->MYB52(1)       <---------AHL20(2)                             <---------At4g35610 <---------AHL20(2)      ---------->DOF2                                <---------ZAT18 --------->AHL20(2)     --------->MYB46(3)                              --------->ZAT18 <---------AHL20(1)     <---------MYB52(2)            <-----------GT1   --------->ZAT14 ---TEIL ------->TEIL ----------->RAV1(1)          <---------ZAT6       <---------ZAT14  ---------->DOF2 --MYB46(3)<---------MYB59           --------->AHL20(2)     ----------->HVH21       ------->TEIL   --   cattttatttgaacctaatgggtgcaacaaaggagcctataaaatagccaagagtgttacctctgacataagagtgaactcttatgtagctcaaagctat  14288500                                                                                            ---------                           <------ZmHOX2a(1)                                                -------->HAHB4                         <---------TOE2(3)                                                 --------->ICU4                  <---------------AGL15             <------MYB83                           <---------YAB1              <---------GLK1(1)                    --------->MYB59                      <---------YAB1              --------->GLK1(1)                <---------ZAT6                     <------ZmHOX2a(1)             --------->ARR11(3)          <---------ETT(2) <---------TOE1(2)    *TSS   ----------->GT1             <---------ARR11(3)     <------------CBF<------MYB46(1)           <<<<<<<<<MYB98--------- ---->ZmHOX2a(1)  --------------->AGL15  --------->ETT(2)------>ZmHOX2a(1)  <---------TOE2(3)    <---   cctagatggatgaaagatttcttcattaaggagaaatgtattgtcgatagtattaggtcctaagttttttttagttttaagttaggagttgtaattatag  14288600                --------->HSFB2a(2)                <---------HSFB2a(2)           <------MYB83                                                                         <----     --------->AHL20(1)                                                                  ----------->GT1     <---------AHL20(1)                                                               <--------ATHB1     <---------AHL20(2)                <---------HSFB2a(2)   <---------ARR11(3)       --------->ATHB12     --------->AHL20(2)------>ZmHOX2a(1)                     --------->ARR11(3)       --------->YAB1 >YAB1     <------MYB46(1)        <---------AHL20(2)         <---------GLK1(2)       <---------YAB1 >AHL20(2)--------->MYB59 <----------DOF2      <-----------GT1     ---------->DOF2   --------->ICU4 ------ANAC46   >>>>>>>ZML2   <---------AHL20(2)       --------->MYB59               <---------ATHB12   agtgtattttattaggttctaggtccttctttttatttattccagtaattttctagttagatagatttttaaagagattacttcgcaatgatagaaaaaa  14288700                     <---------ZAT6                  <---------HSFB2a(2)     <---------YAB1      <---------ARR11(3)               --------->ICU4 <---------LBD16                        <-------      --------->ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------CCA1(2)      <---------YAB1  ---------->DOF2 --------->HSFB2a(2) <---------TOE2(3) --------->LBD16   <----------DOF2    <------- ------ID1     ------>ZmHOX2a(1)<---------MYB46(3)<----------DOF2------->TEIL   <----------DOF2    <-   aacaaaaagatttagtccttctagacttaagcggtggattaatgtttatagtcttttctggggtttgaatctttgactttagctttcttacaattaaggt  14288800                                                                                   <------ZmHOX2a(1)                                                                                  ----------->GT1                                                                             --------->ATHB51                                                                             <---------ICU4                                                                            --------->ICU4                                                                            <---------YAB1                                                                           <---------------AGL15                                                                          <-----------------AG                                                                          <-----------------AGL1                                                                          --------->YAB1                                                                          ----------------->AGL1                   ------>ZmHOX2a(1)         <----------DOF2              ----------------->AG       --------->ANAC55(2)                 <---------At4g35610         <----------DOF2      --------->HSFB2a(2)    --------->AHL20(2)                     <---------TOE1(3)      <---------HSFB2a(2)   --------->AHL20(2)               ------->TEIL----------------->AGL3   =====================HOX2a_HOX2a        --------->At4g35610  <----------DOF2   <----------ID1   ------>ZmHOX2a(1)        <---------AHL20(2)               <---------ARR11(1)  --------->MYB59 --TOE1(3)       ==========================HOX2a_HOX2a       <---------ARR11(3)--------->ICU4 --TOE2(3)  <---------WOX13(1)      <------ZmHOX2a(1)       <---------CCA1(2)<--------HAHB4 ----------GT1   ------>ZmHOX2a(2)--------->MYB59         ------>ZmHOX2a(1)--------------->AGL15  ---   ttctccttctcgtaattgatcctagagtatataaattaggaagtctgctttctcttagtcctgtatctttaagctttcataattaggaaaaaaaaaaaaa  14288900                                             ----------->RAV1(1)     <---------ARR14(2)                                          --------->AtLEC2          <------ZmHOX2a(1)           <----                                     --------->ANAC58         <---------ANAC58           <---------CCA1(2)                                     --------->ANAC58         <---------ANAC58    <---------CCA1(2) <            <--------P               --------->ANAC46     <---------TOE2(3)   <----------DOF2   <---- ------->DOF2                       --------->SPL7        --------->MYB59     <---------DAG2  <------   aaaagagagaaggggtagcgatgagtgatgaattgtggaacgccatacaacatatggatttaggtcgtgaggagcctgaactttatatcccatatcatgc  14289000                                                                                                <----                                                                                            ---------          <---------MYB52(1)                          ------>ZmHOX2a(1)                     <-------- -----ANAC58  <---------ANAC58                       --------->TOE2(3)                      --------- -----------RAV1(1)                               --------->ARR14(2)                      -------->P- -----ANAC58  <---------ANAC58                    <---------ARR14(2)   ---------->DOF2 <---------At4g35610 ---YAB1 <-------GAMYB                     --------->GLK1(1)  ---------->DOF2          --------->At4g35610   ttatgttggagcgttggcttctaacagattaagtctccttggaagaattctaaatcctcaaactcaaagcgttgaaagagctatcttggagctaccttat  14289100  Previous    Next  AGI:  At5g36226.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 7.7e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 14285800    to: 14288236    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g36228.1    Description:  nucleic acid binding / zinc ion binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25600.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) Range:  from: 14288579    to: 14290488    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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