Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->MYB46(3)                                                                                       --------->ANAC46                                                                          --------->HSFB2a(1)                                                                          <---------HSFC1(2)                                                                          --------->HSFC1(2)                                                               --------->YAB1        --------->At4g35610                                   <-------TEIL                ----------->GT1       <---------At4g35610      ---------->DOF2            --------->ARR14(2)       <------ZmHOX2a(2)    <---------ANAC58 --------ATHB12                  <---------ARR14(2)   <---------WOX13(1)  <---------HSFB2a(1)<------- >MYB46(3)                 <---------GLK1(1)   --------->ARR11(3)        <---------------AtSPL8 -ATHB12      --------->YAB1     <---------GLK1(2) <---------YAB1<---------YAB1<---------ANAC58   aatgaaacaaaagaaatcaaaaccctaagaattcagattcactgggaaatatgttgatagatcaatggtgataagaaggtaccttgcatcagccactcac  14254900                 <-------TEIL                --------->CCA1(2)               --------->ARR14(2)               <---------ARR14(2)            <---------ARR14(2)             <---------MYB46(3)          <---------At4g35610            <---------TOE1(2)      ------>ZmHOX2a(1)           <---------MYB52(1)    ----------->RAV1(2)   <---------ANAC58 --------->ANAC58  <---------ZAT14                 --------->ARR11(3)   <---------ANAC58 --------->ANAC58  --------->ZAT14    --------->ANAC58   <---------ANAC46 --------->ANAC46 --------->ALFIN1    --------->ANAC58 --ATHB12 <-------GAMYB    <-----------GT1   --------->ARR14(2)<---------LBD16   tggtttcgttttcgttggatacactcaagttactctcctgtgcagcgaatactactgaaacgaaattcggaagaaattggtttacacaaatttgaaatct  14255000                                             <---------AHL20(2)                                            --------->AHL20(2)                            --------->ARR11(3)         <------ZmHOX2a(1)      --------->DAG2    <---------TOE2(3)       <---------ARR11(3)        <----------ID1         ---------->DOF2---------   aaaattgaagttggagcgagagggagagaagaacttactgggcgaattaaaacgagaggacgaagagaaattgggaagagaaagcgggagtgagagacgg  14255100                                                                         <-----------HVH21                                                                         <---------SPL7               <------MYB46(1)                                 --------->DEAR3(2)               <------MYB83                                    --------->SPL7               <---------MYB46(3)                       <---------HSFB2a(1)             --------->At4g35610              <---------AtMYB61                 <-------GAMYB --------->MYB52(1)        <---------ZAT2            <-------GAMYB                      <---------MYB46(3)    --------->ALFIN1   <---------At4g35610           <-----------RAV1(1)              ------>NtERF2    ------>NtERF2            <---------ZAT18           --------->MYB111(2)             <---------LBD16  --------->DEAR3(1)      <-----------HVH21           --------->MYB55(2)      --------->MYB59      --------->HSFB2a(1)      <-------------------           <---------MYB46(3)      <---------TOE1(3)    --------->HSFC1(2)   --------->HSFB2a(2)       <------MYB46(1)   --------->At4g35610--------->LBD16 ----------->HVH21<---------HSFB2a(2)       <------MYB83   ---------->DOF2     <---------LBD16   <---------ETT(1) --------->LBD16 >CCA1(2)  --------->MYB52(2)      <---------TOE2(3)    <---------HSFC1(2)  <---------TOE1(1) -------   agaagagggaggtttgttggtcgaagaagcagaagtttaggttttccggcgattgcgaaactccgaccggcgaggggtccgagaacggtgagctccatgg  14255200                                                                       --------->TGA2(2)                                                                      <-----------HVH21                                                                     --------->bZIP60(1)                                                                     <---------bZIP60(1)                                                                     --------->bZIP60(2)                                                                     <---------TGA1a                                                                     --------->TGA1a                                                                     ===============================bZIP_DOF                                                                     --------->O2                                                                     <---------O2                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                     --------->ANAC55(2)                                                                     <---------ANAC55(2)                                                                     --------->ANAC46                                                                    <-----------STF1                                                                   <---------ALFIN1                                                                --------->ANAC46                                                              <---------ZAT2                                                              <---------At4g35610                                    ===========================================bZIP_DOF                                    <----------DOF2     *TSS  --------->ZAT2                     <---                <----------DOF2<XXXXXXXXXXXXXXXXXXXXMIR168A/B --------->At4g35610              <-----       --------->At4g35610     ----------->HVH21       ---------->DOF2<-----------TGA1      --------- --WRI1<---------At4g35610 --------->GLK1(1)           ========================bZIP_DOF  ---------->DOF2 -->AtLEC2 ---------->DOF2 <---------GLK1(1)        --------->AtLEC2<-----------bZIP910(1) ----------   acatgtttctgctcaaagcttttcttcagatttctgacctttgccaagttatccatacaaagctagcagccacgtcatcagttttaagtataaaagttaa  14255300            <---------AHL20(2)            --------->AHL20(2)                                                                   <---        <---------AHL20(2)                                                          ---------->DOF2       <---------AHL20(2)                                                 --------->AHL20(2)  -------       <---------AHL20(1)                                                <---------AHL20(2)   <------       --------->AHL20(1)                                                --------->AHL20(2)  <-------       --------->ARR11(3)                       <---------WOX13(1)     --------->YAB1--------->DAG2 ---------CBF                            ---------->DOF2 <---------ARR11(3)       <---------------AGL15 ----AHL20(2)    <------------CBF    <---------TOE2(3)   --------->ARR11(3)       =================== -->GT1--------->AHL20(2)           ---------->DOF2<---------TOE2(3) --------->AHL20(2)  ----------->GT1 ->GT1 <---------ARR11(3)  <---------AHL20(2)  <------------CBF ----------->GT1   --------------->AGL15   attgtggaatatatttaaaaattgggtttttaatggattaaagaaaagagattgacgaagatagtaatgaaaaaaataatttttcaaaaagtagtatatc  14255400                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                             --------->AHL20(2)                                                             <---------AHL20(2)                                                            --------->AHL20(2)                                                            <---------AHL20(2)                                                            <---------AHL20(1)           --------->LBD16                               --------->AHL20(2)          --------------->AGL15                          <---------AHL20(2)        <---------AHL20(1)         <-----------------AGL2                         <---------AHL20(1)         --------->AHL20(1)         ----------------->AGL2                     --------->ICU4                 <---------ARR11(3)         ----------------->AGL3                     --------->AHL20(2)             --------->ARR11(3)    <---------AHL20(2)                              <---------AHL20(2)           --------->AHL20(1)    --------->AHL20(2)                              <---------ATHB51             <---------AHL20(1) -------DOF2                                    <---------AHL20(2)               --------->ARR11(3) -->ARR11(3)                        <---------AHL20(2)  --------->AHL20(2)       <---------ARR11(3) ---ARR11(3)                       --------->AHL20(2)   <---------AHL20(2)    --------->AHL20(2)  <-- --CCA1(2)<---------------AGL15<---------YAB1   --------->AHL20(2)<---------AHL20(2)              <-- =========================MADS_MADS<---------AHL20(2)<---------ICU4  --------->AHL20(2)   --------->TOE2(3)   ttttaaaaaattccacaaatagtactacaagtttttattaaatactaaatataaataattaatttaattaaataaacaaaaaaaatatttttcgtcaaaa  14255500                                                                                      <---------ARR11(3)                                                                              <-------TEIL                                                                          --------->AHL20(1)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                          <---------AHL20(1)       --                                            <----------DOF2              --------->YAB1  <---------AHL20(2)                                      --------->ARR11(3)             --------->AtMYB61--------->AHL20(1)        --------->DAG2                <---------AHL20(1)           ------>MYB83--------->YAB1<-------       ---------->DOF2                <---------ARR11(3)           ------>MYB46(1)    --------->ARR11(3) --------DOF2                         --------->AHL20(1)          --------->ANAC46    <---------AHL20(1) -------DAG2      --------->AtMYB61  --------->YAB1              --------->MYB46(3)  <---------AHL20(2)   cttttttaaaaaagtttccaccaaaacatttcccatcaaaaatattcttttttttttttggtcaaaacccaccaaaaatattcataaatattttttcacc  14255600                                                                          <---------ANAC55(2)                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          --------->ANAC55(2)                                             <---------GLK1(1)           <-----------------------TaNAC69(2)                                             --------->GLK1(1)       <---------ICU4                 <               <---------ICU4         ----------->HVH21             --------->AHL20(1)              -      <-------TEIL                --------->ATHB12                  --------->AHL20(2)  <------------ --------->AHL20(2)         --------->HSFB2a(2)            <---------LBD16<---------ANAC55(1)  ------ ------->AHL20(2) <-----------GT1--------->ICU4    <------ZmHOX2a(1)<---------AHL20(2)  --------->LBD16 ----GT1--------->TOE2(3)   <---------HSFB2a(2) <---------LBD16    --------->AHL20(2)   ------>ZmHOX2a(1)   aaaaaatatacatcaaatttttacaaaattcgagaatgatttgacagaattcaggaagaatttcggaaaaaaaattacgtgaaacccttcctgaatttag  14255700                                    --------->ATHB12                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <---------WOX13(1)                      <---------LBD16                        --------->YAB1                                   <---------LBD16       <-----        --------->TOE2(3)    --------------------->WRI1      --------->ARR11(3)           <xxxxxxxxxx     ------>ZmHOX2a(1)  <---------ICU4                       <---------ARR11(3)  ----------->GT1  <-- ---------GLK1(1)       -------->HAHB4                      --------->RVE1(1) xxxxxxxxxxxxxxxxxxxxxxx -------->GLK1(1)      <---------YAB1                     --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx ---AGL15------>ZmHOX2a(1)<---------YAB1          --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->GT1             --------->ICU4            <-------TEIL--------->GLK1(2)xxxxxxxxxxxxxxxxxxxxxxx   tgaaatccttcctaaatttcagaaaatgattatttgaatgattcgccaaaattcataaaaaaaaatctacaaatttcagggaagggtttcatgaaattca  14255800  Previous    Next  AGI:  At5g36170.1    Description:  HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor. similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT1G56350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22933.1); contains InterPro domain PCRF (InterPro:IPR005139); contains InterPro domain Peptide chain release factor 2; (InterPro:IPR004374); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352) Range:  from: 14253106    to: 14255256    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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