Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------ANAC46                                                                      --------->MYB52(1)                                                                     ----------->HVH21                                                                  <---------AHL20(2)                                                                 <---------AHL20(1)                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                      --------->ZAT18----------->TGA1                                                <-------TEIL     --------->AHL20(1)                                           <---------ANAC46   <---------ICU4                -------->HAHB4             <---------ANAC58   <---------AHL20(2)               <---------YAB1              <---------ANAC55(1)<--------ATHB1               --------->ICU4              --------->ANAC55(2)--------->AHL20(2)          --------->YAB1   <-----------GT1 <---------ANAC58  --------->ICU4    --------->YAB1      --------->YAB1     <---------ANAC55(2)--------->ATHB51          --------->YAB1  <-----------GT1<---------GLK1(2)        <---------LBD16    <---------ATHB51           --------->TOE2(3) -------->AHL20(2)   ----------->GT1     --------->MYB52(1)  <---------ATHB12           --------->TOE1(3)   aatttaacatcatcaaaatgattctgttataacgactactaacttacgggttcaattgcaccaataatttaatgacggagtattttagaaccataaataa  14160800                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        --------->LBD16                                                       <---------ANAC58                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <---------LBD16                                                   <---------ANAC58           --------->AHL20(2)                                                   <---------TGA1a            --------->AHL20(1)                                                  <-------TEIL  --------------->AGL15                                                  xxxxxxxxxxxxxxxx>smallRNA(i)<---------AHL20(2)                                      ----------->HVH21<---------ANAC58       <---------ARR11(3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------ZmHOX2a(1)                                   --------->GLK1(2) --------->ALFIN1  <---------TOE2(3)                                  <---------GLK1(2)<---------ANAC58<---------YAB1                  --------------->AtSPL8      <-------TEIL      <---------------AGL15         <------              <-----------GT1   xxxxxxxxxxxxxxxx>smallRNA(s)   <-----------------AGL2         xxxxxxx     --------->ARR11(3)      xxxxxxxxxxxxxxxx>smallRNA(s)   <---------GLK1(1) <---------AHL20(1)    -     <---------ARR11(3)    <---------ATHB12 --------->LBD16 --------->GLK1(1) --------->ARR11(3)<----   ctaatgagatattgtttttccctgtaccaataactagattctgacccgtacatacgtgcgggatttcttattttaggaaatatattggaatacattttga  14160900                                        <---------ZAT14                                        --------->ZAT14                                   <---------LBD16                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                  --------->ANAC46                              <-----------GT1                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxx>smallRNA(s)                           <xxxxxxxxxxxxxxxxsmallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(i)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <---------ARR11(3)                         <---------GLK1(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->AHL20(1)  xxxxxxxxxxxxxxxx>smallRNA(s)             --------->AHL20(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->LBD16             --------->AHL20(1)      <---    --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------->GT1            <------    --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------TOE2(3)           -------    <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       ---------->DOF2              <------ ---YAB1----------->GT1 <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------AHL20(2)  --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(le3)  <---------LBD16            --------->AHL20(2)  <---------AHL20(2) --------->DOF2  <---------AHL20(2)--------->LBD16      <---------AHL20(2) <---------AHL20(1) ------- -----ANAC46  <---------AHL20(1) ------->GAMYB         --------->AHL20(2)<---------AHL20(1)  --------   gtgaaagatattgtaatatataaactagattttaacccgcggtataccgcgagacgatttatttttttaaagtaatatatattaaaatttgcaaatttta  14161000        --------->AHL20(2)       <---------AHL20(1)       <---------ARR11(3)       --------->AHL20(1)   <---------AHL20(2)       --------->ARR11(3)   <---------YAB1 ------YAB1          <---------TOE1(3)         ---------->DOF2                             <---------HSFB2a(2) ---AHL20(2)         <---------TOE2(3) --------->AHL20(2)                                  --------->HSFB2a(2) -->AHL20(1)        ---------->DOF2    <---------AHL20(2)               <---------DAG2   ----------->RAV1(2) ---AHL20(1)      <---------AHL20(2)  --------->AHL20(2)             <-----------GT1   xxxxxxxxxxxxxx -->AHL20(2)--------->AHL20(2)       <---------YAB1           ----------->GT1         xxxxxxxxxxxxxxx ->AHL20(2) <---------AHL20(2)    <---------YAB1            <---------ANAC46 <-----------GT1      ---   tttttaaaaaatatttatattttaaagtttataattgttattaaaaaaaaaaagaaactactgtgtgtaaaaaaccttttctctctcttccttctgggcg  14161100                            ------>NtERF2                            --------->ABI4(1)                         ------>ZmHOX2a(2)                           <---------ALFIN1                          <------ZmHOX2a(2)                           ------->GAMYB                            --------->ARR14(2)                           --------->DEAR3(1)                       <---------ARR14(2)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ARR11(3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ARR11(3)              <                   ------>MYB83                                     <---------AGP1                <--                   ------>MYB46(1)                                  <-----------ARR10           <----                 --------->DREB2C(2)                        ================HOX2a_HOX2a         <----                 --------->DEAR4(1)                         =================HOX2a_HOX2a     <-------                 --------->DEAR3(1)                         ------>ZmHOX2a(1)                --------              <---------ALFIN1                             --------------------->WRI1        <-------             --------->MYB46(3)                        <---------ANAC58                     <--------            ------>ZmHOX2a(1)                          <---------ANAC58 <-----------GT1    --------->ATERF1(2)         <------ZmHOX2a(2) --------->DREB2C(2)        ---------->ID1<---------ARR11(1)     <---------ATERF1(2)        <---------ARR14(2)--------->MYB46(3)      <----------DOF2  <---------CCA1(2)     ------>NtERF2        --------->ARR14(2)--------->ORA47(2)   ====================HOX2a_HOX2a<---------LBD16<------- xx>smallRNA(s)  ------->GAMYB                 ------>ZmHOX2a(2)   <---------ARR14(1)<xxxxxxxxxxxxxxx xxxxxxx>smallRNA(i2)   <---------ALFIN1     <---------ARR11(3) <---------LBD16  <---------MYB52(1) < ------>GLK1(2) --------->DEAR3(2)           --------->ARR11(3) <---------ZAT18 --------->LBD16 <----   attctacagcgatcctccaccgacttccaccgcctcaattttctggtgatctctttgtcgtcctagtgcggatcttactctccggtgtctctgccggtcc  14161200                                                                                              -------                                                                                      ------>ZmHOX2a(2)                                                                                      ===============                                                                                     --------->At4g35610                                                                                     <------ZmHOX2a(2)                                                                                     ================                                                                                    <---------ARR14(2)                                                                                    --------->ARR14(2)                                                                                    <---------ARR11(3)                                                                                    --------->GLK1(2)                                                                                    --------->ARR11(3) ---------ANAC58                                                                    <---------AGP1 -------MYB52(1)                                                                   <------ZmHOX2a(1) -----ANAC58                                                                    <xxxxxxxxxxxxxxxxxxxx -----DEAR3(2)                                                                 ------>ZmHOX2a(2) --MYB52(1)                                                                    ====================== ->ARR14(2)                                                                   ======================= ----HVH21           <---------MYB46(3)                                       --------->CCA1(2) -DEAR3(2)         <-------GAMYB                            --------->ANAC58  <------ZmHOX2a(2) --ARR14(2)   --------->WRKY38(1)                           --------->ANAC58 --------->ARR11(3)    -- xsmallRNA(s) --------->WRKY12                       <---------ICU4          <---------AGP1   <------ ---------ANAC58  <-----------RAV1(1)         ---------->DOF2                <---------ARR11(3)    -- -----ANAC58<----------DOF2                 *TSS    --------->ICU4           --------->AGP1   <------   gttcgtgttgttctctttgactgttgttgtcttctctgaatccatggataaagaattatggcaagcgcttcaaaatttagatctaggatctgagagagct  14161300            --------->ZAT2            ----------->RAV1(2)            <---------ZAT2          <-----------RAV1(2)        <-----------HVH21      --------->ARR11(3)      <---------ARR11(3) -->GLK1(1) <---------At4g35610 =====HOX2a_HOX2a             <---------ANAC46 =====HOX2a_HOX2a             <---------ANAC58 xxsmallRNA(le3)              --------->ANAC55(2) =====HOX2a_HOX2a             <---------ANAC55(2)                  --------->ARR11(3) =====HOX2a_HOX2a             <---------ANAC58                     <---------ARR11(3) ---->ZmHOX2a(1)          --------->ATERF1(1)                  ---------->DOF2                   <--- ---At4g35610 ----------->HVH21                             <-----------HVH21                -------- ------->At4g35610   <---------DEAR3(1)               <---------MYB59                        <------- ---GLK1(1) --------->At4g35610   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ANAC46 --------   cctctgaagatgtcagctgaagcgaggcgctcgcgtgatatagataatcgtctcagcctaattgtcaaaggtctaaaccctcaacatcagaaaccagcag  14161400                                                                      <---------ZAT6                                                                --------------->AtSPL3                                                             ----------->TGA1                                                           <---------ICU4          <----------DOF2                                  -------->HAHB4         <---------ANAC58                                  --------->YAB1  ---------->DOF2                                         --------->ICU4 ---ZmHOX2a(1)                                            <---------ATHB12 ->ZAT2  <---------ANAC58                              --------->AHL20(2)              <---------TOE2(3) --ZAT2 <-------TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------TOE2(3)             <---------TOE1(3) ->At4g35610     ---------->DOF2        ----------->GT1<---------AHL20(2)          <----------DOF2---   gacttaaaggtgctttgcctaaagcttggagattggatggaagggttacaagtagaattaatgatgacggtactgttcaattcttctttaaggctgaaca  14161500                                                       <-------GAMYB                                                  <---------RAP2.6(2)         <---------ANAC58                                                <---------MYB46(3)          ------->TEIL                                                <------MYB46(1)          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                <------MYB83             --------->YAB1              --------->HSFB2a(2)      <---------YAB1  <---------At4g35610  --------->SPL7              ------>ZmHOX2a(1)      --------->ATHB51 <---------MYB46(3)--------------->AtSPL3      -              <---------HSFB2a(2)    <---------ICU4 <------NtERF2       <---------ATHB12            <              <---------HSFC1(1) <------NtERF2 <---------AtMYB61       ------>MYB83 xxxxxxxxxxxxxxxxx              --------->HSFC1(1)------>NtERF2<---------AtLEC2------>ZmHOX2a(2)<---------ANAC58     <- ------>AtMYB61                 ----------->RAV1(1)<---------MYB46(3)  ------>MYB46(1)   <-----------GT1   ccatctcatgtctgtcctagaaaatggcccttggcaccataatttttggatggtggctgttgatcgatggaccaatcgtaccttgtcaaattttctctct  14161600                                                                               <---------HSFB2a(2)                                                                               <-----------RAV1(1)                                                                               --------->HSFB2a(2)                                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            <---------ARR14(2)                                                                      =====================RAV                                                                      <-----------RAV1(2)                                                                     --------->At4g35610           ----------->GT1                <---------TOE2(3)          <---------ZAT14      <----------DOF2                --------->ARR11(3)              <---------At4g35610 -------->ARR14(2)              ------>ZmHOX2a(1)                    <---------ZAT2 -----------ARR10          --------->KAN4(2)                         --------->ZAT2 xxxxx>smallRNA(se3)      <----------TaMYB80<------ZmHOX2a(1)     xxxxxxxxxxxxxxxx>smallRNA(s) --------CCA1(2)   --------->GLK1(2) <---------ARR11(3)   <---------YAB1    --------->ARR14(2)   caaatctccttttgggttaaaattctgcatattcctcaagattttaggatagacccagttattagagagacagcaggggttctggggcatattgatgaaa  14161700  Previous    Next  AGI:  At5g36005.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 7.3e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 14161244    to: 14166424    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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