Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <---------ANAC58                                                            <---------ANAC46                                                            <---------ANAC58                                                         <-----------------------TaNAC69(2)                                                       --------->ALFIN1                                                      <------NtERF2                                                      <-----------HVH21                                                     <---------DEAR3(2)                                                     <---------MYB46(3)                                                    <---------DEAR3(1)                                                   <---------ABI4(1)                                                   <------NtERF2                                                   --------->ATERF1(1)                                                  <---------RAP2.3(1)                                                  <---------ORA47(2)                <----------DOF2                                                 <---------DREB2C(2)              <---------At4g35610                                                 --------->ETT(1)                 <---------ZAT2                                                 <---------DEAR4(1)           ------>MYB83                             <---------HSFB2a(2) <---------DEAR3(1)           ------>MYB46(1)                             <---------YAB1    <-----------HVH21             --------->ANAC46                             --------->HSFB2a(2)<---------ORA47(1)           --------->ANAC58                   <-------GAMYB              <---------MYB46(3)             --------->ANAC58               --------->STY1(1)          --------->ALFIN1<---------ANAC46  --------->MYB46(3)               <---------STY1(1)  --------->ATHB12<---------ATERF1(1)    --------->AtMYB61<---------At4g35610 -->NtERF2<---------ALFIN1<---------ARR14(2) <---------AtMYB61<------NtERF2 <---------MYB55(2)  <----   gcccatccagccaaaccctagggttgaagttctgaaagattggagtgatggtcggcggtgaggcgtagagggagaccaccagccagcttttgagctcgtc  14106700                                                                                                  <--      <---------DEAR3(1)                                                                          <--      --------->DEAR3(1)                                             <---------LBD16           <<<<<<      <---------ETT(2)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <------      --------->ETT(2)                         <---------ARR11(3)  --------->ARR14(2)        <-------     --------->ATERF1(1)                       <---------ARR14(2)  <---------ARR14(2)        <-------     <------NtERF2                             <---------GLK1(2)------->GAMYB                <-------    ------>NtERF2              <---------At4g35610    ------>ZmHOX2a(1)                      <-------   --------->DEAR3(1)       ------->TEIL       --------->ARR14(2) --------->GLK1(1)         <------NtERF2   <---------ANAC46--------->LBD16             --------->ARR11(3) <---------GLK1(1)       <---------DEAR3(1)   --------->ATERF1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->ANAC46      --------->MYB52(1) -----ANAC46     <---------LBD16 ----------->HVH21  ----------->RAV1(2)--------->LBD16 <-----------RAV1(1)   gtgtgccgtcgacgttctcaccggaaaatgcacatctgatggtccaagagatactcctgccatcaacgaaatccggtgagaaggaactaatggtggcgtt  14106800                                                                                <---------ARR14(2)                                                                                <---------ARR11(3)       --------->AGP1                                                           <---------AGP1       <---------AGP1                                                           --------->ARR11(3)       <---------ARR14(2)                                                       --------->ARR14(2)       --------->ARR14(2)                                           --------->ZAT14       <---------ARR11(3)                                           <---------ZAT14      <---------CCA1(2)                                            ----------->HVH21 -------ANAC58                                                   <---------At4g35610 -------ANAC58                                                   --------->At4g35610 <<<MYB2<------ZmHOX2a(2)                                       --------->DEAR3(1)    <---------YAB1 -GAMYB--------->ARR11(3)                                ---------->DOF2       <---------CCA1(2) --ANAC46                                            <---------TOE2(3)     <---------ANAC46 --ANAC58                                            <---------TOE1(3)  <-----------RAV1(1)       <-- --ANAC58------>ZmHOX2a(2)                     <---------YAB1   --------->RAP2.3(2)  <--------------- --bZIP60(2)      ---------->DOF2     xxxxxxxxxxxxxxxx>smallRNA(i)<----------CDC5 ------>ZmHOX2a(2)   gctagtccagatctagagcctaaagataaatcgatgaagacttgctctgatgtttgaggtaaagagccgctgaactgttgtggatcttctgattttggtt  14106900                                     ------>NtERF2               ------>ZmHOX2a(2) ------>ZmHOX2a(2)              <------ZmHOX2a(2) <------ZmHOX2a(2)             ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ------->MYC3 ----------->HVH21  <---------ARR11(3)  ---------->DOF2             <-------MYC3 -------LBD16--------->ARR14(2)--------->ARR14(2)           >>>>>>>>>TBF1       <---------ARR14(2) --AGL2      <---------ARR14(2)<---------ARR14(2)   <-----------RAV1(2)  ---------->DOF2--------->ATHB12   tcagggacagagatggatccaaggtctgagacagatcggagccaaagaaaaccctcagggaagaagaacacatgggaaagggaatttggatgtttggaga  14107000                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                         --------->SPL7                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                     <------NtERF2                                                                                    <----------------                                                                                    ------>NtERF2                                                                                   <---------DEAR3(1)                                                                            --------->HSFB2a(2)                                                                            <---------HSFB2a(2)                                                                          <------ZmHOX2a(2)                                                                         --------->AGP1<---------SPL7                                                                         --------->ARR11(3)        <-               >>>>>>>>>TBF1             --------->ANAC46                --------->ARR14(2)    ------      --------->ICU4             ------>MYB83  ---------->DOF2           <---------ARR14(2)    <-----      <---------ATHB12           ------>MYB46(1)                      <---------WOX13(1)--------->MYB52(1)   gaattgaaatcatggaagaagaatcaaacgagaccaagcttatacagaacaaagagaggctgaatagagttgatagatccagacgctggcgaacggaagc  14107100                                                   <------ZmHOX2a(1)                                                 --------->ALFIN1                                               <---------O2          --------->At4g35610                  <---------bZIP60(2)          <---------At4g35610                  <---------ANAC46       <------NtERF2                         --------->REM1(2)      ------>NtERF2                         ----------->TGA1      <-----------HVH21                     ----------->HVH21     --------->TGA1a                       --------->LBD16    --------->RAP2.3(1)                   --------->ANAC55(2)  --------->DREB2C(2)                     <---------ANAC55(2)  --------->DEAR3(1)                      <---------ANAC55(1) --------->DEAR3(2)                       <---------ANAC46 --SPL14<-----------RAV1(2)               <---------ANAC58 --------ALFIN1      *TSS                 <---------ANAC58        ---------->DOF2 --->At4g35610    --------->ATHB12       <---------LBD16     ----------->GT1                 -------- ----At4g35610   <---------YAB1       <---------GLK1(1)  <----------DOF2               --------->ANAC46   tccaccggcgtcagaaggcatgaatggtgagagtgtctcgatttccgtgacgaggagcgtttttagtaaaaagctcgcctacttaataaacaccatattt  14107200                   --------->AHL20(2)                 --------->AHL20(2)                --------->YAB1              --------->AHL20(2)               <---------AtLEC2          <---------ZAT6               --------->AHL20(2)                      <-----------GT1          ----------->GT1              <---------AHL20(2)      --------->TOE2(3)   --------->GLK1(2)                  --------->AHL20(2)       --------->TOE1(3) --------->ANAC46 ->ARR14(2)----------->GT1         --------->ATHB12 ------->TEIL    <-----------GT1   tctaaaatctgagagttaaaataatatagtctaccattgatttaatttttcatgaacatactaaaccttataacccgatataaacccaattctatatcaa  14107300                                                                                            <--------                   ----------->GT1                                                          <--------                 <-------TEIL<---------YAB1                                            <------ZmHOX2a(2)              <---------ANAC58                                                        <---------AGP1              <---------ANAC58                                                        <---------ARR11(3)              <---------ANAC46                                                        --------->AGP1              <---------ANAC55(1)                                                     --------->ARR14(2)              <---------ANAC55(2)                                                     <-----------ARR10              --------->ANAC55(2)      <---------GLK1(2)                              <---------ARR14(2)          <---------DAG2   --------->YAB1       <----------DOF2                       --------->ARR11(3)          <----------DOF2 <---------YAB1--------->GLK1(2)                            <---------CCA1(2)       <-----------GT1    <---------AHL20(2)    <---------DAG2           <----------DOF2------>ZmHOX2a(2)   tgtttttttttactttacgtgcagttatattataaatgtaagattctaaacttttttggtctcgtttgaagtattcttttaatcttcagatctacttttt  14107400                                                                                              -------                                                                                  -------->HAHB4                                                                                  <--------ATHB1                                                                                  <---------ICU4                                                                                  --------->ATHB51                                                                                 --------->AHL20(2)                                                                                 --------->ICU4                                                                                 <---------YAB1                           <--------HAHB4     <---------At5g28300                <---------AHL20(2)                          <---------YAB1 --------->AHL20(2)                  --------->AHL20(2)                    <---------ARR11(3) <---------YAB1                       --------->YAB1<---------ZAT2                    --------->ARR11(3)<---------AHL20(1)          <---------AHL20(2)      --------->At4g35610                 <---------TOE2(3)    <---------AHL20(2)         --------->AHL20(2)       <---------At4g35610                ---------->DOF2     <---------YAB1    <---------YAB1  ----------->GT1 <-----------HVH21 -DAG2        <---------YAB1 <---------YAB1  <-----------GT1    <---------YAB1 --------->YAB1<-------TEIL --DOF2      --------->YAB1--------->YAB1<---------AHL20(2)    --------->AHL20(2)<---------ATHB51   ttgtttgacttacaatattaaagatactattattatctattatttttttactgtttaatattgaatattatatagaaataaaaataattgtcagctacat  14107500                                                                                       --------->LBD16                                                                                      <---------ANAC46                                                                                      <---------ANAC58                 <---------ARR11(3)                                    --------->YAB1 <---------ANAC58  <---------ANAC58          --------->DAG2              <---------RVE1(1)            <---------LBD16  <---------ANAC46        ---------->DOF2              --------->ARR11(3)       <----------DOF2     <  <---------ANAC58<------ZmHOX2a(2)                    <---------GLK1(2)<---------AHL20(2)  <-------- -->REM1(1)      --------->ARR11(3)                    <---------ARR11(3)      <---------DAG2       <   cgatgcttataacttataagatcgatgcgaaagggagacaattagataactaagaaagatttttaaaaacgaataaaaatgccttttcccgtgtgcatgt  14107600  Previous    Next  AGI:  At5g35935.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.0e-232 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 14100618    to: 14107121    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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