Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <------------------SPL14                                           ------------------>SPL14                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      --------->ANAC46                                      ------->GAMYB                   <---------MYB52(1)                                      --------->DEAR3(1)             <---------RAP2.6(3)                                     --------->DEAR3(2)              <-------GAMYB                                     <------------AtMYB77           ----------->GT1                                     <------------MYB.PH3(1)     ------------>MYB.PH3(1)                                     --------->MYB46(3)     --------->YAB1                                   <---------ARR14(2)      <------ZmHOX2a(2)                            <---------ARR14(2)            --------->ARR11(3)                  >>>>>>>                           --------->HSFC1(2)             <---------ARR11(3)                <--------                           --------->HSFB2a(1)   --------->SPL7<---------ICU4               ---------                           <---------HSFB2a(1) --------->LBD16 ---------->DOF2              <--------       <---------LBD16     <---------HSFC1(2)  <---------SPL7 --------->ICU4                <--------   <---------ARR14(2) <---------TOE2(3)  <---------ALFIN1--------->GLK1(1)                 <---------CCA1(2)   --------->ARR14(2)---------->DOF2<---------At5g28300  <---------GLK1(1)                 <---------ARR14(1) --------TOE2(3) <------ZmHOX2a(1) --------->ARR14(2)  <------ZmHOX2a(1)                   --------->GLK1(1)   taagggatttggggagagaggattaaagaagtttcggtaaccgcctctccgtagggaggagatcataatgccgttattctctaatctaatagcatatcta  14043600                                                                                               ------                                                                                               ------                                                                                               <xxxxx       <-------TEIL                                                                            ------      --------->CCA1(2)                                                                <---------AHL20(2)     <---------ARR14(2)                                                               --------->AHL20(2)     --------->ARR14(2)                                                        --------->HSFB2a(2) >>RAP2.2                                                      <---------YAB1  <---------HSFC1(1) -ARR14(2)                                   ---------->DOF2 --------->YAB1    --------->HSFC1(1) >ARR14(2)                ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ZAT6 -ARR11(1)         <---------MYB52(1)       <---------REM1(1)<-----------GT1   >>>>>>>ZML2 <--------- -ARR11(3)      <-------TEIL   <----------DOF2           <------ZmHOX2a(1)     <---------HSFB2a(2)---   aaacctagatacaccaagtccattagcctaaagctttgatgagaagatgaagcacttgaggaattacaattggccagggttctagagataaaattacaca  14043700                                                           <---------LBD16                                                     <----------CDC5                                             <---------ATHB12                                          --------------->AGL15                            <---------At4g35610---------->DOF2 --->ANAC58             <----------DOF2   <---------------AGL15 --->ANAC58            <---------ANAC46  ----------------->AGL3 --------->GLK1(1) xxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1 --->ANAC46            <---------ANAC58  ----------------->AG   <---------GLK1(1)          --------->CCA1(2) --GT1       <----------ID1 <---------LBD16--------->WOX13(1)<------NtERF2               <xxxxxxxxxxx ------>AtMYB61        <---------ANAC58  <-----------------AGL2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)-   ccaaaaccattgaaatcgacaaatggcttaagcggagtccataaccaattaaggcgctaagtcgggatatcaattctaatgggctaattagagatttaag  14043800                                                                                               ------                                                                                          <----------                                                                                         --------->MYB46(3)                                                                                         ------------             <---------MYB59                                                            --------->ANAC58      ----------->RAV1(2)                                                               --------->ANAC46      <---------TGA1a                       --------->TOE1(2)                           --------->ANAC58     <---------ARR14(2)                  --------->ARR14(2)                           <---------ALFIN1   =============MYC_MYB                  <---------ARR14(2)                        --------->PCF2   -   ------->GAMYB                        ------>MYB46(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->MYB46(3)                    ------>MYB83         --------->CCA1(2)    <-----------TCP11(1) xxxxxxxxxxxsmallRNA(si3)             <---------MYB111(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <----- -------->MYB52(1)                    <---------MYB59--------->At4g35610     ---------->DOF2---------   agtaacagacctgggccaaactagtggagaaaatgggctaccaaatccaaggatgggctgaagataaacaaataggcccaaaagaggcccacccaaaagg  14043900                                              <------NtERF2                                             ------>NtERF2                                            --------->RRTF1(2)                                            --------->RAP2.3(3)                                            --------->RRTF1(3)                                            --------->DREB2C(2)                                            --------->RAP2.3(2)                                            --------->ANAC46                                            --------->DEAR3(1)                                            <---------ATERF1(2)                                            --------->RAP2.6(2)                                            --------->ATERF1(2)                                           --------->RAP2.3(1)                                           --------->ATERF1(1)                                           --------->RAP2.6(1)                                           --------->ERF1                                           --------->RRTF1(1)                                           --------->ORA47(2)                                           --------->DEAR4(2)                                          <---------ATERF1(1)                                         --------->ANAC46                                      <---------ALFIN1                                     --------->SPL7                                  <---------ANAC58                                  <---------ANAC46                                  <---------ANAC58                                 --------------->AtSPL3                                ------>NtERF2<---------ATERF1(1)                               ------------------>SPL14                               --------->DEAR3(1)                              --------->ATERF1(1)                             --------->At4g35610------>NtERF2     --------->WOX13(1)                             <---------At4g35610----------->RAV1(1)  ------------>CBF    --------->TOE1(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------------>CBF ----->GT1             --------->ALFIN1  --------->DEAR3(1)   --------->ANAC58 -----AGL15     <---------HSFB2a(2)  --------->ZAT14          --------->ANAC58 ----->AGL2     --------->HSFB2a(2)<---------SPL7         <------NtERF2 -------->GLK1(1)  <------ZmHOX2a(1) <---------ZAT14  <-----------HVH21                    <------ZmHOX2a(1) -----ID1 <---------GLK1(1)--------->ZAT18--------->ABI4(1) ---------->DOF2             <------NtERF2 ->DOF2 <------ZmHOX2a(1)<------ZmHOX2a(1)------>NtERF2 <---------DEAR3(1)       ---------->DOF2    <   agaaaccctaggaaacctctaggaagaggagcgctgccgtacaccgccgccaacatcgtcggagaagccaatccaatagaaaacaaagtcggaggagaag  14044000                                                                   ------>MYB46(1)                                                                   ------>MYB83                                                                 <---------MYB46(2)                                                                 <---------MYB111(2)                                                                 --------->MYB46(3)           <---------ANAC58                                      <---------MYB111(1)                -           <---------ANAC58                                      <---------MYB59                   --          --------->ATHB12                                     ------>MYB46(1)               <-------         <---------YAB1                                        -------->P                 <------ZmHOX2a(1)       --------->YAB1                                          ------>MYB83           --------->TOE1(2)       <---------ICU4                                         ------>ZmHOX2a(1)      <---------ANAC58      <---------ATHB12          <---------ANAC58         --------->KAN4(2)           <---------ANAC46    --------->YAB1              <---------ANAC58    <---------MYB46(3)--------->TOE1(2) <---------TOE2(2) --------->YAB1                <---------At4g35610 <---------TOE1(2)  --------->TOE2(2) <---------TOE1(2) ---------YAB1                 --------->At4g35610<---------MYB52(1) --------->YAB1  <---------ANAC58   ttttgataatcatgcttgggagagaaaccacttagcttactgatatagtctcgtttgtttattcctaccaaacatatgactatgttttcgtaggaaattg  14044100                           <---------ANAC46                           ----------->GT1                          --------->ALFIN1                   --------->ARR14(2)                   <---------ARR14(2)                                           --------->LBD16                   <---------TCP20                                             --------->ANAC46                   --------->PCF5                                              --------->LBD16                  <---------TCP16(2)                                          --------->HSFB2a(2)                  --------->ATERF1(1)                                         <---------HSFB2a(2)                  ------>NtERF2                                              <---------LBD16                  <------NtERF2                                           --------->KAN4(2)                 <---------SPL7                                          --------->HSFB2a(1)                <---------ANAC58                       <---------MYB52(1)<---------HSFC1(2)                <---------ANAC46                      <----------DOF2    --------->HSFC1(2)         x     <------MYB83----------->HVH21                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)              --     <------MYB46(1)     <-------MYC3         ----------->HVH21          <---------HSFB2a(1)       <-    --------->MYB59--------->PCF2           --------->At4g35610      ----------->GT1       ------>MYB83 -------->DAG2  <---------ANAC58            <---------At4g35610      --------->LBD16       ------>MYB46(1) -------->DOF2 <---------LBD16  ---------->DOF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------MYB59 -----CBF------------>CBF------->MYC3   <-----------HVH21          <---------LBD16      --------->ANAC46   gaaaagttggtcccaatggcggacccatgtggtgaaaagaggggtcatttgacaccctttagttttaaatcgggaaaattcccgaaaaaaacccaactta  14044200         --------->HSFB2a(2)         <---------HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->GLK1(2)--------->TOE1(3)   --------->ARR11(3)                                                   --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->TOE2(3)   <---------ARR11(3)                                      <-----------GT1                          <   <---------ARR14(2)                                <------ZmHOX2a(1)--------->ARR11(3)            <   --------->ARR14(2)           --------->AHL20(2) <---------TOE2(3)  <---------ARR11(3)           xx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------RVE1(1)      <---------CCA1(2)             xx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ARR11(3)    --------->AHL20(2)             --- ------->AHL20(2)   <---------MYB59          --------->ARR11(3)--------->LBD16                    --- --------AHL20(2)   --------->TOE2(3)      <---------TOE2(3) <---------LBD16                   <-----   tttaaaatctgccagaaaactacctaaacccgttttaaatagtttgagatttttaggaaattttccggtttaaatcttaaatagttttcatcttgtttcg  14044300                                                 --------->ANAC58                                                 --------->ANAC58                                               <---------ALFIN1                                              --------->ANAC46                                            --------->ANAC46                                          --------->AtMYB61                                          --------->DEAR3(1)                                          --------->MYB46(3)                                          <---------ALFIN1                                          <---------MYB55(2)                                         <---------ALFIN1        <------MYB83                     --------->ANAC58        <------MYB46(1)                  --------->ANAC58       --------->MYB59                   --------->ANAC46   --------->ATHB12                     ------>NtERF2 <---------WOX13(1)                    --------->AtMYB61                                          --- -----------------AGL1            ------>NtERF2----------->RAV1(1)                               <--- -----------------AG             <---------ALFIN1--------->ANAC46        <---------MYB46(3)      ---- xxxxxxxxxxxxxx>smallRNA(i)      --------->AtMYB61                      <---------MYB52(1)       <--- xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->DEAR3(1)                 <-------GAMYB             ---- ------>WRKY38(1)       <---------ICU4 <---------ALFIN1        ------>ZmHOX2a(2)             <------- -------->HVH21     --------->REM1(1) --------->MYB46(3)     --------->ARR14(2)             <-------- ----ANAC46    ------->TEIL     --------->MYB46(3)          <------ZmHOX2a(1)              <---------CCA1(2)   gtgactgatttggtatgaagctacaattttgacccccacccccacccccccacacaaatgcaggatcgattcccgttgttgccattttttctcatatatt  14044400                                               --------->GLK1(2)                                              <---------GLK1(2)                             <---------At5g28300        --------->ATERF1(1) <-----------GT1   --------->ARR14(2)       <---------SPL7     <-----------HVH21   <---------ARR14(2) ------>ATHB12   <---------AHL20(2)          <---------At4g35610 ------AHL20(1) <---------AHL20(1)   <----------DOF2 ----->AHL20(2) <---------ARR11(3)<---------ARR11(1)                     <---------HSFB2a(2) ------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->HSFB2a(2) ----->AHL20(1)<---------CCA1(2) <---------MYB52(1)                     ----------------->AG    <---- --AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <----------DOF2         <------- -AHL20(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <-----------GT1             <-----------GT1   ttattgggccgtagcccatatattttgttgtcaccgtttcttttgtcagattcttctaatattacattcaactttccaaaactataaatataccaatttt  14044500  Previous    Next  AGI:  At5g35890.1    Description:  beta-galactosidase. similar to beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G15025.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944) Range:  from: 14043093    to: 14043956    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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