Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <---------DEAR3(2)                                                                                           <------MYB83       --------->ATHB12                                                           xxxxxxxxxxxxxxxxxxx      --------->ICU4                                                             <---------YAB1      <---------YAB1                                                           <---------ICU4   <---------YAB1                                                              --------->YAB1 --------->CCA1(2)                          <----------DOF2                   --------->ICU4 -------->ARR14(2)                       ---------->ID1                    --------->AHL20(2) ---------ARR14(2)--------->YAB1      <----------DOF2                      <---------AHL20(2) --->MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <----------DOF2     <------MYB46(1)   gggatacgattattgggttttcatattttggtgtttcggtcttttcctttttagtattggttttgagagttttctttttaattatgtttaagtcggtttg  14024700                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               --------->ARR11(3)               <---------ARR11(3)               <---------ARR14(2)               --------->ARR14(2)               --------->ARR14(3)               <---------GLK1(2)               <---------ARR14(3)             ----------->ARR10      ====================HOX2a_HOX2a      ------>ZmHOX2a(2)     <------ZmHOX2a(2)     =====================HOX2a_HOX2a    <---------AGP1    --------->ARR14(2)    <---------ARR11(3)    --------->GLK1(2)    <---------ARR14(2)          --------->YAB1              ------>MYB46(1)    --------->ARR11(3)   --------->YAB1                     ------>MYB83    <-----------ARR10   <---------YAB1                    <---------MYB59                   <--------   =====================HOX2a_HOX2a                       --------->TOE2(3)                 <------MYB46(1)   <------ZmHOX2a(1)  --------->YAB1                   <-----------GT1                      ---------   ====================HOX2a_HOX2a                   <---------MYB52(2)                     <------MYB83 xxxx>smallRNA(si3)------>ZmHOX2a(1)            ----------->RAV1(1)                  ---------->DOF2   tatgaggatctatataagatcctcttataatcaataagaaatcaaacctccaacaattaacctaattctctaagagagacttggattaaaaggaaggttt  14024800                                        <---------ATHB12                                   ------>NtERF2        ---------->DOF2                               --------->ANAC58        <---------WRKY12                               --------->ANAC46 <------ZmHOX2a(2)                               --------->ANAC58 --------->CCA1(2)                              <---------LBD16  <---------ARR11(3)      <---------ARR11(3)      <---------At5g28300------>ZmHOX2a(2)      --------->ARR11(3)     --------->MYB52(1)--------->ARR11(3)         --------->ZAT6 -HSFB2a(1)                  <-----------GT1   --------->AGP1     <---------At4g35610               < >HSFB2a(1)                 <---------ATHB12   <---------AGP1 <----------DOF2             ------>ZmHOX2a(2)   tgcttcaatatctatcttgttctacttcaaatcacggctccaattactagatctaagtcaaaggctttagctcataacacaatgctatttgatctcagca  14024900                                           --------->ANAC58                                        --                                           --------->ANAC46                                        <-                                           --------->ANAC58                                       ---                                      --------->ANAC46                                <---------ANAC58                                --------->ANAC58                                      <---------ANAC58                                --------->ANAC58    --------->At4g35610       --------->HSFB2a(2) ---                              --------->MYB52(1)    <---------At4g35610       <---------HSFB2a(2) ---                  ---------->DOF2     --------->ANAC58           --------->LBD16     --------------->AtSPL8                <---------HSFB2a(2)   --------->ANAC58          --------->ANAC46     --------------->AtSPL3 ---------YAB1  --------->HSFB2a(2) --------->MYB52(1)  ------------>CBF<---------ALFIN1         <---   ttcttatttctctaatttctaaaagaccaaaataacgcaaacggcacgcagtttagctctcaatacccgagacaacacttctcgtagtccgtacttaaac  14025000         <---------ZAT14         --------->ZAT14         <---------ZAT18         --------->ZAT18   --------->ANAC58   --------->O2   --------->ANAC55(2)   --------->bZIP60(2)   --------->ANAC58                       --------------->AtSPL3   <---------O2                           --------------->AtSPL8                            ---------   --------->ANAC46                       <---------------AtSPL3                           --------->MYB46(3)  ------>NtERF2                           <---------------AtSPL8                         <---------ALFIN1 <---------ALFIN1                    <---------ANAC58                                   --------->MYB46(3) ---->NtERF2 <----------DOF2         <---------ANAC58                               ---------->ARF1 < ----------HVH21                     <---------ANAC46                           <---------GLK1(2)  <- ------>ANAC46                    ----------->TGA1                             --------->At4g35610 == ------>ANAC58                    ----------->HVH21     *TSS                   <---------ZAT2    <--- ------>ANAC58         --------------->AGL15   --------->REM1(1)               <---------At4g35610 == ------LBD16 <---------DAG2 ---------->DOF2   <-------TEIL <<<<<<<<<TBF1------>ZmHOX2a(1)--------->ANAC46   ccgccacgtagttcactttattcaacttaaaaaagcatgacgttttggtacatctatcttcttcttcccccttcctctctcagcttctctcccaccacta  14025100                 ------>ZmHOX2a(2)               <---------ARR11(3)               <---------ARR14(2)      --------->KAN4(2)     --------->HSFC1(2)     <---------HSFB2a(1)     <---------KAN4(1)     --------->KAN4(1)     --------->HSFB2a(1)       <---------ARR14(2)     <---------HSFC1(2)        --------->GLK1(1)    <---------KAN4(2)          --------->ARR14(2)  <------ZmHOX2a(1) <----------DOF2                                                           <------  ======================HOX2a_HOX2a        <---------ARR11(3)                      ------>ZmHOX2a(2)  =====================HOX2a_HOX2a         --------->ARR11(3)                      =================HOX2a_HOX2a >AtMYB61      --------->ARR14(2)          --------->GLK1(2)                      <------ZmHOX2a(2) ---------------AtSPL8         <---------GLK1(1)                          --------->ATHB12   ------>ZmHOX2a(1) -----ZmHOX2a(1)<------ZmHOX2a(2)    --------->LBD16            --------->MYB52(1)==================HOX2a_HOX2a ======================HOX2a_HOX2a  --------->HSFB2a(2)      --------->TOE2(3)   <---------ARR14(2) ------TOE2(3) --------->ARR11(3)   <---------HSFB2a(2)      --------->TOE1(3)   --------->ARR14(2) =======================HOX2a_HOX2a<---------LBD16 --------->MYB46(3)   --------->GLK1(2)    <-------   aggaggaacgttccaaagatccctttctcagagaattcccagaaaaatcttcaacaattgaaaccctaatggagaatcattcggatccttgaatcctttg  14025200                                                                                                 <---                                                                                                 <---                                     <---------YAB1                                             -----                                 <----------DOF2                                             --------                                <---------ANAC58     <-------TEIL                         --------->ZAT14       <---------ALFIN1         <---------ANAC58   <---------GLK1(2)                    --------->ANAC46  ---------->ID1           --------->ATHB12        --------->ARR14(2)                 --------->ZAT6 ---MYB52(1)              <---------YAB1           <---------ARR14(2)        <-----------HVH21  ----- ---DOF2                  <---------AHL20(2)   <---------At4g35610   ---------->DOF2  <---------ALFIN1   gtttgtctctcacctccatttctgaaatttcattgctttgtgattcttctgcagattcgttttgaagagaagaaagaaatgtcatcgaacacttcacgaa  14025300                                                                --------->ANAC55(1)                                                                --------->ANAC58                                                                --------->ANAC58                                                                --------->ANAC46            ------>ZmHOX2a(2)                                  <---------LBD16          --------->AGP1                                      <---------ALFIN1 --------->ARR14(2)          <---------AGP1                               ---------->DOF2         --------->GLK1(2)          --------->ARR14(2)                        --------->ANAC46           <---------ARR14(2)          --------->ARR11(3)                        --------->ANAC58 --------->HSFC1(2) ------ZAT2<------ZmHOX2a(2)                        --------->ANAC58 <---------HSFC1(2) ------At4g35610                                 --------->DEAR3(1)  <---------HSFB2a(1) ---->GLK1(2)<---------HSFB2a(2)                 <---------DEAR3(1)  --------->HSFB2a(1)       <----- ->ANAC46 <---------ARR11(3)              --------->ARR11(3) <---------REM1(2) <-----------ARR10 -->TEIL  <---------ARR14(2)              <---------ARR11(3)--------->CCA1(2) <---------GLK1(2)>>>>>>   gctgttctactagatctagacaaaactctcgagtttcttcacaagttctcgtcgacgcaaagctacacggaaacttcgaagaatctgagcgtttatttga  14025400                                                       --------->At4g35610       <-------TEIL                                     ------>ZmHOX2a(1) <---------ZAT2    --------->HSFB2a(2)    --------->At4g35610       --------->ARR11(3)       ----------->RAV1(2)     <---------ARR14(2)    <---------At4g35610       <---------ARR11(3)       <---------At4g35610     --------->ARR14(2) ------GT1             --------->ANAC58                --------->ZAT2    <---------HSFB2a(2)   <----- >>>>WRKY63            --------->ANAC58     --------->GLK1(2)       ------->TEIL--------->CCA1(2)   ctattcagcttcaataaacttgaacatgccaagttcttcctgtgagattccttcttcagctgtctcaacgtacttacagaagattcagagagggatgttg  14025500                                                                                           <---------                                                                                           ----------                                                                                 <---------ANAC58            <---------MYB46(3)                                                   <---------ANAC58          <---------ANAC58                                                       <---------ANAC46          <---------ANAC58                                                       <------MYB83          <-------GAMYB                               <----------DOF2            <------MYB46(1)        <---------AtMYB61                           ----------------->AGL1  <-----------RAV1(1)      <----------DOF2  <---------MYB46(3)      --------->ATHB12    --------->ANAC46       ===========      <---------MYB52(1)                  ---------->DOF2          --------->ANAC58       ----------- <-----------GT1<---------AHL20(2)     --------->TOE2(3)           --------->ANAC58       ----------- ----YAB1<---------MYB46(3)            --------->TOE1(3)   <---------ZAT6  --------->ARR11(3)   <----   attcaaccctttggttgtttaatcgttgttgatgagaaaaaccttaaagtcattgcctttagtgaaaacactcaagagatgttgggtttgattccacata  14025600  Previous    Next  AGI:  At5g35840.1    Description:  PHYC (PHYTOCHROME DEFECTIVE C). Identical to Phytochrome C (PHYC) [Arabidopsis Thaliana] (GB:P14714); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41164.1); similar to PHYTOCHROME C [Arabidopsis lyrata] (GB:ABG21360.1); similar to phytochrome F Range:  from: 14025056    to: 14028994    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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