Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->ATHB12                                                                           --------->bZIP60(1)                              <--------HAHB4                        --------->ZAT14                              --------->ATHB12                   --------->ZAT2                    --------->LBD16                              <---------ZAT2  <xxxxxxxxxxxxxxxxxxx                   --------->LBD16                               --------->At4g35610                   <---------ANAC46                              <---------At4g35610     --------->GLK1(1)       <---------YAB1                      ----------->RAV1(2)    >>>>>>>>>GT-1 <---------HSFB2a(2)                    <---------AHL20(2)<---------bZIP60(1)<------ ----------->GT1--------->PCF5--------->YAB1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------CCA1(2) ---------TOE2(3) <---------LBD16                    <----------DOF2<---------ZAT14   --------->ANAC58 ---GLK1(1)----------->RAV1(2)<---------ICU4   ---------->DOF2 <-----------RAV1(2)    --------->ANAC58   ctgaggtaaatccatctggtcccggagatttatcattaggcatagagaacaaagcctttttaatctcagctgcagtgacttcattggtaagcatctcttt  13996900                                                                    <------ZmHOX2a(1)                                                              --------->YAB1                                                              <---------ICU4                                                     --------->TOE2(2)                                                     --------->TOE1(2)                                                   <---------ARR11(3)                      ----------->GT1              --------->ARR11(3)     --------->At4g35610                 --------->DAG2            xxxxxxxxxxxxxxxxxx>smallRNA(fl3)               ---------->DOF2           --------->MYB46(3)   --------->ATHB12        --------->AtLEC2           --------->At4g35610       <---------ATHB12                      <- xxxxsmallRNA(fl3) ----------->GT1 <---------At4g35610       --------->ICU4        <---------GLK1(2)- ----DOF2  ----------->RAV1(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ZAT2  ---------->DOF2   ttctatttccatacaacaaaagggtagtaactcttgaagctcagccactgaaataccttcgaaatcattaggaactagctgcaaaaattctctaaagaac  13997000                                  ----------->HVH21                                  --------->LBD16                                  <------NtERF2                                     --------->LBD16                                 ------>NtERF2                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <-----------TGA1                                  <---------LBD16                                <---------bZIP60(1)                              ------>NtERF2                                <---------ANAC58                              --------->SPL7                                --------->bZIP60(1)                           <---------ATERF1(1)                                <---------ATERF1(2)                         --------->LBD16                                --------->ATERF1(2)                        <---------ANAC55(2)                                <---------ANAC58                           <---------ANAC58                --------->GLK1(1)<---------RAP2.6(3)                       --------->ANAC55(2)             <---------YAB1     --------->RAP2.3(3)                        <---------ANAC58         <-------GAMYB  ------>ZmHOX2a(1)   <---------TOE1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <-----------RAV1(1)   <---------ZAT18            ------->TEIL      <---------ANAC55(1)  ----- --------MYB52(1)    ------>ZmHOX2a(1)   <-----------------AGL1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->SPL7  <---------GLK1(1)<-----------HVH21      <---------GLK1(2)  <---------ANAC46 <--------   cgttcagcctctgttgtgatttcctcctcttgtgccgtcacagtcccatgttggcattgaatctctctaattgtgttccgtgcctcccgcgttgtaacag  13997100                                                                                --------->At4g35610                                                                                <---------At4g35610                                                                                <---------ZAT2                                                                                --------->ZAT2                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                  --------->AHL20(1)                                                                  --------->ARR11(3)                                                                  <---------ARR11(3)                                                                  <---------AHL20(1)                <                                    >>>>>>>>>>>>>>>>>LFY <---------At4g35610 --------->LBD16     <---                               --------->YAB1            --------->At4g35610<---------HSFB2a(2)  ----                              <---------ATHB12       --------->ARR14(2)     --------->HSFB2a(2)  ----                             ------>MYB83        <---------YAB1   --------->AHL20(2)             xxxx ---->At4g35610        <------ZmHOX2a(2)        <-----------GT1   <---------AHL20(2)             <--- ---GT1   <----------DOF2    ------>MYB46(1)  --------->ICU4     --------->AHL20(2) ----------->HVH21   ctctatgaaatgctttattgtttcgatcaccaatcttcatccaatgtaattttcatttctgcttcaaatatatttcttccagagctgcgaccttgtccca  13997200      --------->ANAC58                     <--------P      --------->ANAC46                    <-------GAMYB      --------->ANAC58                   ----------->GT1     --------->SPL7                   --------->ALFIN1                                       --------   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC46                                    <----------DOF2   <---------SPL7                   <---------MYB46(3)                              <---------ANAC55(2) -----------HVH21                  <-----------RAV1(1)             ----------->HVH21--------->ANAC55(1) ------TGA1a                   <---------ANAC58                  --------->At4g35610--------->ANAC58 ----->TGA1a                   <---------ANAC58                  <---------At4g35610--------->ANAC58 ----->O2               <---------AtLEC2<------NtERF2        ------>ZmHOX2a(1)      --------->ANAC46 xxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------AtMYB61       ----------->RAV1(2)      --------->ANAC55(2) ------O2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <---------ATERF1(1)    *TSS  ------->TEIL   agtgtcatacgcctcattttcttcttgcattgagcttgtggtggggttagacaaattggcctcctgcttctgacacaatttctcatacgcatcttttgtt  13997300                                                                       --------->TOE2(3)                                                                     <---------ARR11(3)                                                                     --------->ARR11(3)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               ----------->GT1                                                             <---------ANAC58                                       <---------YAB1        <---------ANAC58                       -                                       ----------->TBP       <---------ANAC46                       <                                   --------->TOE2(3)         <---------ANAC55(1)                  ---                                  <---------ICU4             --------->ANAC55(2)                  <--                                  --------->YAB1             <---------ANAC55(2)                 ----                                <-----------GT1             <---------LBD16     --------->MYB52(1)<--                      --------->YAB1<---------YAB1         <-----------GT1      <-----------GT1  ---- --->GT1  <---------YAB1  ----------->GT1           <----------DOF2 --------->GLK1(1)          ------   aaaaaacacattttgattttcttataagaagtttaaacattataaatactaaaactttatattacgggtgaaatcttagaattaacgagtatgagtcaat  13997400                                            <---------AHL20(2)                                         <--------HAHB4                                         <--------ATHB1                                         -------->HAHB4                                         --------->YAB1                                         --------->ATHB51                                        <---------ATHB51                                        <---------YAB1                                        --------->ICU4                                     --------->AHL20(2)                                     <---------AHL20(2)                               ------>ZmHOX2a(1)                              --------->TOE2(3)                            <------ZmHOX2a(2)                           <---------ARR11(3)       =============================HOX2a_HOX2a                                            <---------YAB1       <------ZmHOX2a(1)   --------->AGP1<---------ICU4                                 <---------YAB1       ============================HOX2a_HOX2a                                          --------->ICU4 <---------YAB1            <---------ARR14(2)                <---------ARR11(3)        --------->TOE2(3) -------->AHL20(2)         --------->ARR14(2)<---------AHL20(2)          --------------->AGL15 ---------AHL20(2)         --------->ARR11(3)--------->AHL20(2)--------->TOE1(3)      <---------ICU4 ------>AHL20(2)          <---------GLK1(1) --------->YAB1   --------->ARR11(3)       --------->YAB1 -------AHL20(2)          --------->GLK1(1) --------->AHL20(2) --------->TOE2(3)----------->GT1 ----->TOE2(3)        <-----------HVH21 --------->AHL20(2) <---------AHL20(2)  --------->DAG2    ---- -------YAB1       --------->ZAT2   --------->AHL20(2)    --------->AHL20(2)  ---------->DOF2<------- ----->YAB1        ----------->RAV1(2)--------->YAB1   --------->YAB1 --------->ZAT6 --------->ICU4 --->ICU4     <-----------GT1------>ZmHOX2a(2)         --------->AHL20(2)<---------------AGL15   ----   attaatataggatgatataccacctgtgagatcctaaaattaataattaaaatacaattataaaatcttaaaacactaaataaagtaaacattattaaca  13997500                                                                                          --------->GLK1(2)                                                                                         <---------GLK1(2)                                  --------->AHL20(2)                             --------->ARR11(3) ----->ANAC58              <---------AHL20(2)                  ------>MYB83      <---------ARR11(3) ----GT1               --------->AHL20(2)                      ------>MYB46(1)  <---------CCA1(2) ----->ANAC58 <---------ICU4----------->GT1          --------->TOE2(3)    --------->AHL20(2)       <-   agacaaatacaactaaaaatttcaaatatttagttataaaatatagtctatcttacattaaaaccaaacaaaacaataacatatatctacagaatttgtt  13997600                                                              ----------->GT1                                                          <---------AHL20(2)                                                         <---------WOX13(1)                                                       <---------ICU4                                    <---------ARR14(2) --------->ATHB51                                <-------TEIL           --------->ATHB12                           --------->ANAC55(2)         -------->HAHB4                             ---                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATHB12     ----------->GT1 <----                    --------->ALFIN1--------->ARR11(3) <--------ATHB1     --------->DAG2        -----         --------->CCA1(2) <---------ANAC55(2)        <---------YAB1 --------->AHL20(2)--------->ARR11(3)       --------->AHL20(2) <---------LBD16             <---------ATHB51    <---------TOE2(3)    <-----   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               --------->ICU4<---------AHL20(2) <---------ARR11(3) ----------GT1    <---------ANAC46 <---------CCA1(2)--------->YAB1  --------->AHL20(2)--------->RVE1(1)   ttaactaaaatatatgcatgcggtgtatcacgggttcatatctagtatgctacataataattgattgtaaataaataaggtgagataaaaatctccaaaa  13997700                                                                                                -----                                                                                                <----                                                                                                -----                                                                                              -------                                                                                            <------MYB46(1)                                                <----------DOF2                         --------->ZAT2                                      --------->AHL20(2)                                <---------ZAT2                                      <---------ICU4                                    <---------STY1(2)                                      --------->YAB1                                    --------->STY1(2)           --------->YAB1             <--------ATHB1             --------->YAB1      <---------ANAC58 ------>TOE2(3)                       --------->ATHB51           -------->HAHB4      <---------ANAC58 -----ARR11(3)                       <---------ATHB12           <---------YAB1   <---------ANAC58 ---->ARR11(3)           --------->ALFIN1   <----------DOF2   --------->YAB1 <----------DOF2<------MYB83 ----GLK1(2)      <----------ID1     <---------ATHB51        --------->AHL20(2)  <---------ANAC58 <xx   tctcaattgccaataacattacaacaagtgtgtctctcaataatttctttcttttttgaacaaataataatagaaaacgctttacttgcgagctaggtgt  13997800  Previous    Next  AGI:  At5g35802.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.6e-27 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 13995677    to: 13997281    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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