Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                -----                                                               <---------ARR11(3)               <----                                                               --------->ARR11(3)     ----------->GT1                                                           --------->YAB1     --------->ATHB12  <----           ------->TEIL                           <----------DOF2------>ZmHOX2a(2)  ---------->DOF2          <-----------GT1              --------->ICU4   <----------DOF2  --------->ANAC58       -----        <---------ATHB12         <---------------AtSPL8<---------ANAC58  --------->AtLEC2      ------ <----------DOF2                 --------------->AtSPL8<---------ANAC58  --------->ANAC58   ---------   tctctttccaatgaacccttcttcatatgtagaattttgtacttatttgagcctttggctttcatgatctctaacatgcaagattgcaaagttaaaaaga  13989400                                                      <---------ARR11(3)                                              ----------->RAV1(1)                                             --------->DREB2C(2)                                             --------->RRTF1(2)                                             --------->At1g77200                                             <---------ETT(1)                                             --------->DEAR4(1)                                             --------->RAP2.3(3)                                             ----------->HVH21                                             --------->RRTF1(3)                                             --------->DEAR3(1)                                             --------->ANAC46                                             --------->RAP2.3(2)                                             --------->RAP2.6(2)                                            --------->RAP2.3(1)                                            <------NtERF2                                            --------->ORA47(2)                                            --------->ATERF1(1)                                            --------->RRTF1(1)                                            --------->DEAR3(2)                                           --------->LBD16                                           ------>NtERF2                                           --------->At4g35610                                           <---------At4g35610                                           <---------ATERF1(1)                                          --------->DEAR3(1)      ----------->RAV1(2)                 --------->RAP2.3(2)      <---------At4g35610                 --------->RAP2.6(2)    <-----------GT1                       --------->ATERF1(2) --->ZmHOX2a(2)         <-----------HVH21 <---------ATERF1(2) ----->CCA1(2)      <---------ARR14(2)   --------->RAP2.3(1) ---ZmHOX2a(2)      --------->ARR14(2)   --------->ATERF1(1) -----ARR14(2)   <---------ANAC46       --------->At4g35610 ---->ARR14(2) --------->LBD16          <---------At4g35610                                  <------- ---->AGP1    <---------ANAC58          ------>NtERF2 --------->ARR11(3)                   --------->ATHB12 -----AGP1    <---------ANAC58          <---------ATERF1(1)       <---------MYB46(3)      --------->ICU4 -----ARR11(3)<---------LBD16          <-----------RAV1(1)       <---------MYB52(1)       <---------ZAT6 ---->ARR11(3)<---------ANAC46       xxxxxxxxxxxxxxxxx>smallRNA(fl3)        <-------TEIL  <---------YAB1 --->RVE1(1) <---------LBD16  <---------ATHB12------>NtERF2     <-------GAMYB        <---------REM1(1) ->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ERF1   <---------At5g28300  <-----------RAV1(1)   tctgattcacctgtttgcggggtattcgtcaaatgatgtctctgccgccgacacaagttcttctaccgttgttggacatacattgtgttgtagtgattgg  13989500                                  <---------LBD16                                <---------ARR14(2)                        <---------AHL20(1)                        --------->AHL20(1)                        --------->ARR11(3)                        <---------ARR11(3)                        --------->AHL20(2)                  --------->CCA1(2)                  <------ZmHOX2a(2)                 <---------ARR14(2)                 <---------ARR11(3)             --------->MYB55(2) <---------CCA1(2)          <------                 --------->ARR14(2) --------->LBD16               --------->ARR14(2)          <------                 --------->ARR11(3) ----------->GT1----------->HVH21                          <------     --------->AHL20(2) <---------AHL20(2)      <---------MYB46(3)<---------ARR14(2)  --------->ANAC58 --WOX13(1)      --------->AGP1 --------->ARR14(2)<---------WOX13(1)                  --------->ANAC58   atagcattaaaaaatccaagatccaatatattcaaatccggtgaattcagtggttgacacatcaagcgtatatcaaacccaaactgtgaagcaattgctt  13989600                             <---------ANAC58                         <---------ANAC58                        <-------TEIL                                               <---------DAG2                      ------->MYC3                                                 <----------DOF2                      <-------MYC3                                           <---------WRKY18(1)                      <-------MYC2                                 --------->ARR14(3)        <---------At4g35610  <---------ANAC58                      --------->GLK1(2)        <---------CCA1(2)<---------ANAC58                          --------->ARR14(2)       ------->TEIL   ------->MYC2              --------->ANAC58   --------->ARR11(3)               < ---ANAC58      <---------ARR14(2)              --------->ANAC58   <---------ARR14(3)   --------->HSFB2a(2) ---ANAC58      --------->ARR14(2)   --------->ARR11(3)            <-----------ARR10    <---------HSFB2a(2) ---ANAC46     <---------CCA1(2)     <---------ARR11(3)            <---------ARR11(3)xxxxxxxxxxxxxxxx   gaaattgtgcatctctcgtatccacatgcgttcttgcattatcttgttgaacgaaaatagttttcccaaaatcttctcttgaccacttttcgcgaatttt  13989700                 --------->ANAC58                 --------->ANAC58            --------->WOX13(1)      <---------DAG2              ------>ZmHOX2a(1)      <----------DOF2         --------->ARR14(2)  <------ZmHOX2a(2)           <-----------GT1 <---------ARR11(3)          <---------CCA1(2)                               <---------GLK1(2) --------->ARR11(3)      <----------DOF2                                   --------->ANAC46        <- ---------At4g35610  <---------CCA1(2)              --------->MYB52(1)    <---------LBD16       ----- >smallRNA(s) <---------ATHB12<---------ARR14(2)   --------->AtMYB61 --------->HSFB2a(1) <---------YAB1   tgagatcactttttcaatcaagcatctctttatatcctctctcttgatggagaccatcggtttcaattccaacattcccgcttctctatttatgcttcgt  13989800                                                                            -------->ATHB1                                                                            --------->YAB1                                                                            -------->HAHB4                                                                            --------->ATHB51                                                                     ----------->GT1                                                                    <---------WOX13(1)                                                                   <---------ANAC58                              --------->ANAC58                     <------------CBF                              --------->ANAC58                     <---------ANAC58                           <------NtERF2                          --------->ATHB12      <------------CBF                          --------->ANAC46                       <---------YAB1       --------->AHL20(2)                          --------->ANAC58                  <---------ANAC58<---------ICU4          <                          --------->ANAC58                  <---------ANAC46<---------AHL20(2)     --                         --------->ZAT18                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----                      --------->ANAC58                     <---------MYB46(3)         <---------AHL20(2)                      ------>MYB83                      <------------CBF   <---------ATHB51      <---         ---------->DOF2 <---------ZAT18               --------->ATHB12    <---------YAB1        <---        *TSS          ------>MYB46(1)        --------->ANAC58  <-------GAMYB--------->ATHB12     ----        <---------ATHB12<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------ANAC58<--------HAHB4    ------- --------ANAC46       --------->ANAC58       --------->ANAC58 --------->ALFIN1    <------ZmHOX2a(1)-- ----->ID1<---------------AtSPL8            XXXXXXXXXXXXXXXXXXXX>MIR843    --------->ICU4 -----------   cgcttagacaatgaagcacaaaccaagcccgctagcaacttaaacccaagtaaaacttcattgggtgttgattgttaattattaggaattaattgttaaa  13989900                                         <---------ANAC58                                         <---------ANAC58                                         <---------ANAC46                                    <-------GAMYB                                   --------->MYB111(2)                                   <---------MYB46(3)                                <------MYB46(1)          --------->ALFIN1      <------MYB83 --------->YAB1                --------->MYB59                         <----------DOF2 ---------YAB1                 --------->MYB111(1)                 --------->O2 ------->AHL20(1)          <---------ANAC58                        <---------O2             --------- ----->AHL20(1)            <---------ANAC58                     ----------->HVH21          --------->YAB1 ------AHL20(1)<---------ANAC58--------->MYB52(2)              <---------WOX13(1)         --------->AHL20(2) ------AHL20(2)<---------ANAC58<---------AtMYB61               <----------DOF2        --------->AHL20(2) ----->AHL20(2)<---------ANAC46--------->MYB46(2)             <---------AtLEC2        <---------AHL20(2) -->AHL20(2) <---------ANAC46 <---------MYB55(1)        --------->ATHB12         ------->TEIL ------- ------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ANAC58--------->ANAC55(2) >GT1     <-----------RAV1(1)<---------MYB52(1)  <-------TEIL <---------ANAC58<---------ANAC55(2)  --   atattataagatgtgttgtgtgatgttatgcgttaggttgttagcgtgatatacatgttgatttgcttgacgtctttaagacgtatttttaaataaaaat  13990000                                                                                     --------->ANAC46                                                                                 <-----------GT1                       <---------ARR11(3)                                       <---------YAB1                       --------->ARR11(3)                               <---------ANAC46                      --------->YAB1                                  --------->MYB52(1)                     <---------YAB1     <---------YAB1               ----------->HVH21         --------->AHL20(2)  <---------TOE2(3)   --------->ARR11(3) <---------MYB52(2) ----------->GT1   --------->YAB1       <---------TOE2(3)           --------->DEAR3(2)             -- >AHL20(2)---------->DOF2   ---------->DOF2   <---------TOE2(3)    <---------At4g35610            --- -->AHL20(2)       <---------ICU4   <------ZmHOX2a(1)      <---------ZAT14----------->GT1         --- -------->DOF2    --------->ICU4---------->DOF2 <------ZmHOX2a(1)  --------->At4g35610          -----   ataaagataaataaaagagaataatgatattaaagaaaggataagattgaggatgttggactgtaatggaactgacgggtttattacaggtcattaatcg  13990100                                 <---------ANAC58                                 <---------ANAC46                                 <---------ANAC58                           --------->MYB52(1)                           <---------LBD16                          --------->CCA1(2)                                    <<<<<<<<<MYB98                        <---------ZAT2               <---------ANAC58         ----------->GT1                        --------->ZAT2        <---------ICU4                 ----------->GT1                  <------ZmHOX2a(1)           <--------HAHB4                <---------TOE2(2)                 <---------HSFB2a(1)          --------->ATHB51              ------->TEIL                 <---------HSFC1(2)          --------->ICU4             <---------TOE1(3)   --------->ANAC58  ------>ZmHOX2a(2)     --------->YAB1  <------ZmHOX2a(1)<---------TOE1(2)   --------->ANAC58<---------ARR14(2)      --------------->AGL15        <---------TOE2(3) ---->NtERF2  <------ZmHOX2a(1) <---------DEAR3(1)   <---------ANAC58  <---------DOF5.7(2) -------->HVH21  --------->HSFC1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  --- ------>WRKY12==============HOX2a_HOX2a    --------->TOE2(3)           --------->MYB52(1)       ----- ---->At4g35610  --------->HSFB2a(1)       --------->HSFB2a(2)       --------->DOF5.7(2)    ---------   ctgacgagcaatgagaggaaggatcgagctacgggccgtggtcttccataattaggcttgaggagccataagttaacgtatgttaaaaactaagaaaaga  13990200            <---------ANAC46        ------>ZmHOX2a(2)      --------->AGP1      --------->ARR14(2)      <---------AGP1      <---------ARR14(2)      --------->ARR14(3)      <---------ARR11(3)      <---------ARR14(3)             <-------GAMYB      --------->ARR11(3)      <---------ANAC58     --------->RVE1(1)        <---------ANAC58  ---------->DOF2            <---------HSFC1(2)                                <xxxxxxxxxxxxxxxxxxxxx -------->GT1           --------->ANAC58    <---------ANAC58          <---------ANAC58 ----->DOF2<---------LBD16   --------->HSFC1(2)     <------ZmHOX2a(1) <---------ANAC58 ->DOF2<------ZmHOX2a(2)--------->ANAC58    <---------ANAC58        <---------YAB1   aagtaaaagatcttgcggtgagcaagacggaagcttgtctgttatagcttactaggaaagtttaagctatatgcttgttgtttgagtctatgcttatgaa  13990300  Previous    Next  AGI:  At5g35798.1    Description:  transposable element gene. Mariner-like transposase family, has a 1.9e-52 P-value blast match to GB:AAC28384 mariner transposase (Mariner_TC1-element) (Glycine max) Range:  from: 13989237    to: 13989808    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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