Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------AHL20(2)     <--------HAHB4     --------->YAB1     <---------ICU4    <---------ATHB12  --------->WOX13(1)  --------->YAB1  <-----------GT1                                            --------->ARR11(3) ---------YAB1                                               <---------ARR11(3) ------>YAB1                                                 <---------AHL20(1) ----->ATHB1                                          <---------HSFB2a(2) ------>AHL20(2)                                      --------->HSFB2a(2) -------ICU4                                       ------->TEIL ------>ATHB51                                  --------->ANAC58 ------HAHB4       --------->ANAC58             --------->ANAC58       <---------TOE2(3) ------ATHB51      --------->ANAC58           --------->MYB52(1)       --------->MYB59 ----->ICU4 <-----------GT1               --------->ZAT6 <------ZmHOX2a(1)                    ------- ------ATHB12   <---------ZAT18------->TEIL <---------MYB52(2)--------->AHL20(2)          <---------AHL20(2)   ttattaatcatttttttcggcactcaattcacgaatgtgaatcaccactaacgcatctaggaatatatatagtaaggtatacaacttattttttaatcaa  13966100                                                   --------->DAG2                <---------ARR11(3)       --------->AHL20(2)                <---------GLK1(2)      <---------------AGL15      --------->ARR11(3)               --------------->AGL15           --------->CCA1(2)      <---------ARR11(3)               ------>ZmHOX2a(1)         <------ZmHOX2a(1)                 --      <---------AHL20(1)              --------->TOE2(3)  --------->KAN4(1)  ------->TEIL           <-      --------->AHL20(1)         <<<<<<<<<MYB2    --------->MYB52(1)  --------->ARR11(1)         <---   --------->AHL20(2)       <----------DOF2      --------->CCA1(2)  ----------->ARR10            <--- -->YAB1        --------->ARR11(3)    --------->TOE1(3) <---------KAN4(2)<---------YAB1 --------->YAB1   aacaaaaaaatatttgtagatttttgggacctttggttttccttaaaatagataagggaatattggaggatagatatgaatctatatgaattagaattta  13966200                                               =====================HOX2a_HOX2a                                              ======================HOX2a_HOX2a                                              <------ZmHOX2a(2)                                             <---------ARR14(2)                                             --------->ARR14(2)                                             --------->ARR11(3)                                 <----                       --------->ALFIN1      <---------AGP1                              ============           <----------DOF2                   --------->GLK1(2)                           <---------TGA1a ------->ARR11(3)   <---------TOE2(3)        <---------ARR11(3)   <---------ARR14(2)     --------->TGA1a --------ARR11(3)   <---------TOE1(3)       <------ZmHOX2a(1)------>ZmHOX2a(1)           ============ ------TOE1(3)      --------->DAG2        <---------TOE2(3)----------->RAV1(2) --------->AHL20(2) ------TOE2(3) <---------YAB1 --------->GLK1(1)------>ZmHOX2a(2)  --------->ARR14(2)    ------->TEIL   aggtcttaaatccctttgtgataaggtttgggatacctatattttaggatctgtgtttatctcctgtggaaactctcttgtataaatacgaacgtgagtt  13966300                 <----------DOF2           --------->ANAC46           --------->ANAC58                                      --------->YAB1       --------->ANAC46                                <------ZmHOX2a(2)       --------->ANAC58                               --------->ARR11(3)       --------->ANAC58                         --------->ZAT2 <---------ARR11(3)     ---------->DOF2--------->YAB1              --------->At4g35610    --------->YAB1 <---------YAB1               <---------At4g35610 ---TEIL   --------->ANAC58                ---------->DOF2 --------->YAB1 ===============bZIP_DOF             ----------->GT1  <---------ARR11(3) ===============bZIP_DOF         <---------REM1(2)  ----------->ARR10                          <-----   catcaataaaagcaagtcactttgataaccaattctacatggtatcaaagagctgagatcatcaaaatcatcttcaaaaattttgtgttcttaagttaag  13966400                                                     <---------ICU4             --------->ARR14(2)                                                    --------->ICU4      <---------At4g35610                                                   ------------>CBF--------->TGA1a------>ZmHOX2a(2)                                               <---------ANAC55(2) --------->O2 <---------AGP1                                               --------->ANAC58  ------>MYB83<---------WOX13(1)                                               --------->ANAC55(2) ===========================bZIP_DOF                           <---------At4g35610 --------->ANAC58  --------->MYB52(1)<----------DOF2           <-----------GT1<---------ANAC46     ----------->GT1   ------>MYB46(1)<---------ARR14(2)      <------------CBF <---------MYB52(1)  <-----------HVH21  --------->ANAC58  --------->ARR11(3)    <---------AHL20(2)<-------GAMYB     <---------ANAC46      --------->ANAC58  ------->TEIL --------->TOE2(3)   <-----------RAV1(1)<---------ANAC58  *TSS--------->ANAC46  <---------ARR11(3) ----TOE2(3)   <----------DOF2          <---------ANAC58--------->YAB1 <---------MYB46(3)--------->WOX13(1)   aattcttaaattgtttcctttctctgttgagttgatagtcttgtgtgtcaagtaacaatgacaaacccaacgtctggtgatggatctttgtcaaccatgt  13966500                                       ----------->HVH21                                      <------NtERF2                                     <---------ATERF1(1)                                     <---------MYB46(3)                                     <---------DEAR3(2)                                    <---------DEAR3(1)                                   <---------ABI4(1)                                   <------NtERF2                                   --------->ATERF1(1)                                  <---------ORA47(2)                                  <---------RAP2.3(1)                                  <---------DEAR3(2)                                  ------>NtERF2                                  <---------ERF1                                 <---------DREB2C(2)                                 <---------At1g77200                                 <---------RAP2.3(3)                                 <---------DEAR3(1)                                --------->ATERF1(1)                               <-----------HVH21                              <---------bZIP60(2)                              <---------ANAC58                              <---------O2                              <---------TGA1a                              <---------ANAC46                              --------->TGA2(1)                              <---------TGA2(1)                              <---------bZIP60(1)                              --------->bZIP60(1)                              --------->TGA1a                              <---------ANAC58                              --------->O2                              =========================================bZIP_DOF                             ----------->STF1                            <---------TGA2(2)         --------->ZAT14                  <---------YAB1                           ----------->TGA1           <---------ZAT18             ------>NtERF2                         <---------MYB46(3)           <---------ZAT14          <---------LBD16                        <---------DEAR3(1)           <---------MYB52(1)        --------->LBD16                        --------->ALFIN1             --------->DOF5.7(2)      <---------LBD16                        <---------AtMYB61        <---------At5g28300         <---------LBD16                     <---------AtMYB61--------->At5g28300   <----------DOF2--------->GLK1(2)                ========================MYC_MYB <-----------GT1   --------->ZAT2 <---------DEAR3(1)                -------->P ----------->HVH21>>>>>>>>>SUP  <---------DAG2<---------MYB52(1)         --              --------->MYB46(3)--------->DDF1<-----------HVH21   <---------ZAT2--------->LBD16   <--   cgagttctatcggaaaacaaccagaggtggtgacgtcggcggtgacagtgtcaccgttcactctttctagctccgataatccgggggctatgattccatc  13966600                                                                                               ------                                                                                              -------                                                                                   <---------At5g28300                                                                               --------->TOE2(3) ----                                                                              --------->YAB1  <------                                                                              <--------HAHB4  -------                                                                       <---------ANAC46       -------            ----------->HVH21                                     ---------->DOF2  <---------TOE2(3)          ----------->GT1                                       --------->ANAC58  <---------DOF5.7(2)      <---------WRKY18(1)                                       --------->ANAC58  --------->MYB52(1)     --------->WRKY38(1)        <---------WRKY38(1)           --------->MYB52(1)--------->DOF5.7(2) -  --------->ICU4                ----------->HVH21        --------->ANAC58    <---------YAB1   ------- ------->WRKY18(1)              --------->ETT(2)         --------->ANAC58  --------->GLK1(1)  ------- ---------HVH21                 <---------ETT(2)         --------->ANAC46----------->GT1<---------ZAT18   ggtcatgttgactggtgacaactacaattcttggtcgacagagatgctaaacgctcttcaagccaaacgaaagacgggtatcattaacggtgcaatacgt  13966700         <---------At4g35610      <---------At4g35610      --------->At4g35610    <-------PIF5    ------->PIF5   ----------->RAV1(2)  --------->MYB52(1)                                                 --------->ZAT2 --->TOE2(3)                                                         <---------ZAT2 -->ANAC58                                        --------->YAB1 ------>ZmHOX2a(2) ------>DOF2                           --------->At5g28300      <------ZmHOX2a(2)               <---- ---ANAC55(2)                         ----------->GT1<---------MYB46(3)                     <<<<<<<<< -->ANAC55(2)                        <---------DEAR3(1)        ------->TEIL                --------->GLK1(1) -->ANAC46                          <---------At4g35610   <---------AtLEC2            ----------->GT1 -------->MYB46(3)     ----------------->AGL1    <---------YAB1<---------ARR14(2)    --------->DAG2 -->ANAC55(1)  --------->YAB1       <---------------------WRI1 --------->ARR14(2)  ---------->DOF2  < -->ANAC58 <---------YAB1           --------->At4g35610  <---------MYB46(3)      --------->MYB46(3)--   aaaccacctgctgatgatcaaaatttcgaaaattggacagcggtgaattctatgatagttggatggatccgagcttccatcgaaccaaaggtgaaatcca  13966800                                                                             --------->YAB1                                                                          <---------ARR14(2)              <---------At4g35610                                      <---------ANAC46              --------->At4g35610                                      <---------ANAC58            <-----------RAV1(2)                  <---------ARR11(3)    <---------ANAC55(2)         --------->At4g35610       --------->ATHB12                    <---------ANAC58    <----------DOF2              <---------WOX13(1)    <-----------RAV1(1)--------->ARR14(2)       -- -----At5g28300<---------GLK1(2)>>>>>>>>>GATA-2  --------->ARR11(3)    --------->ANAC55(2)    <------ <GATA-1 <---------At4g35610    >>>>>>>>>GATA-1  <---------GLK1(2)    <-------TEIL            ------- ---------MYB52(1)              >>>>>>>>>GATA-3----------->ARR10 ---------->DOF2              <------ ------->At5g28300              >>>>>>>>>GATA-4--------->ICU4 ----------->RAV1(1)             -------   ccgtgactttcatctcagatgctcatcaattgtggattgatttgaagcaaagattttctgtgggcaacaaagtgcgtattcatcaactcatagcacagct  13966900                                                                                                    -                                                                                                  <--            --------->ICU4                                                                        <--         <------NtERF2                                <-------GAMYB                              ----       --------->RAP2.6(2)                           --------->MYB52(2)                     <--------       <---------bZIP60(1)                       <---------ANAC58                           <--------       <---------ANAC46                      <-------GAMYB<---------ANAC46                  <-------- --------->HVH21                            <---------DEAR3(2)                         --------->ZAT6 ---ZAT2<---------RAP2.6(3)                 <---------MYB46(3)              <-----------GT1 <-------- -->ZAT2------>NtERF2               <---------YAB1   <---------MYB46(3) ------>MYB83--------->ANAC46- ---At4g35610                 <---------TOE2(3)  <---------ANAC58       ------>MYB46(1)<---------ICU4 -->At4g35610        --------->GLK1(2)     <---------DEAR3(1)         <---------MYB59 <---------ATHB12   cgcgacatgccgtcaagatggacaatctgttttagattactatggacggttgagttcgttgtgggaagaataccaaatttacaaacccatcactacgtgt  13967000  Previous    Next  AGI:  At5g35777.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.0e-67 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 13966458    to: 13971032    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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